Wall clock time and date at job start Sun Mar 7 2021 04:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39282 * 121.03205 * 2 1 4 4 C 1.46503 * 134.19655 * 0.02562 * 3 2 1 5 5 C 1.50705 * 126.59874 * 359.97438 * 4 3 2 6 6 O 1.42897 * 109.47031 * 285.00463 * 5 4 3 7 7 Si 1.86301 * 109.46772 * 165.00149 * 5 4 3 8 8 C 1.34183 * 106.79972 * 179.97438 * 4 3 2 9 9 N 1.36946 * 109.94991 * 359.97438 * 8 4 3 10 10 C 1.37144 * 110.11916 * 0.02562 * 9 8 4 11 11 N 1.32824 * 132.97037 * 179.97438 * 10 9 8 12 12 C 1.31306 * 121.89427 * 179.97438 * 11 10 9 13 13 C 1.39747 * 121.03157 * 180.02562 * 2 1 3 14 14 C 1.47664 * 120.45838 * 359.97438 * 13 2 1 15 15 O 1.21578 * 119.99328 * 6.05009 * 14 13 2 16 16 N 1.34769 * 120.00736 * 186.03913 * 14 13 2 17 17 C 1.46496 * 120.00669 * 180.02562 * 16 14 13 18 18 H 1.09007 * 112.84845 * 336.20170 * 17 16 14 19 19 C 1.53781 * 113.61659 * 107.50579 * 17 16 14 20 20 C 1.53774 * 87.07903 * 89.11966 * 19 17 16 21 21 H 1.09000 * 113.69213 * 270.87038 * 20 19 17 22 22 C 1.53008 * 113.61309 * 139.98405 * 20 19 17 23 23 N 1.46497 * 109.47212 * 87.50039 * 22 20 19 24 24 C 1.34942 * 126.03922 * 124.99943 * 23 22 20 25 25 C 1.35316 * 107.74797 * 179.97438 * 24 23 22 26 26 C 1.39868 * 107.92039 * 0.02562 * 25 24 23 27 27 N 1.30840 * 108.20344 * 359.73560 * 26 25 24 28 28 C 1.53776 * 87.08626 * 25.43525 * 20 19 17 29 29 H 1.08996 * 109.47557 * 96.42241 * 1 2 3 30 30 H 1.09009 * 109.47052 * 216.42184 * 1 2 3 31 31 H 1.08998 * 109.47218 * 336.41419 * 1 2 3 32 32 H 1.09003 * 109.46591 * 45.00564 * 5 4 3 33 33 H 0.96705 * 113.99444 * 180.02562 * 6 5 4 34 34 H 1.48494 * 109.99916 * 60.00282 * 7 5 4 35 35 H 1.48500 * 109.99893 * 181.31998 * 7 5 4 36 36 H 1.08000 * 125.01957 * 179.73123 * 8 4 3 37 37 H 0.97007 * 124.93633 * 179.97438 * 9 8 4 38 38 H 1.07996 * 119.31468 * 180.02562 * 12 11 10 39 39 H 0.97004 * 119.99942 * 0.02562 * 16 14 13 40 40 H 1.09003 * 113.61430 * 203.67304 * 19 17 16 41 41 H 1.08998 * 113.61167 * 334.56793 * 19 17 16 42 42 H 1.09001 * 109.47035 * 207.49691 * 22 20 19 43 43 H 1.09003 * 109.46838 * 327.50095 * 22 20 19 44 44 H 1.08003 * 126.12751 * 359.97438 * 24 23 22 45 45 H 1.08004 * 126.04279 * 180.02562 * 25 24 23 46 46 H 1.08002 * 125.90189 * 180.02562 * 26 25 24 47 47 H 1.09000 * 113.61810 * 220.02380 * 28 20 19 48 48 H 1.08999 * 113.61661 * 89.11343 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1935 0.0000 4 6 1.8514 2.6101 0.0005 5 6 0.4524 3.1704 0.0006 6 8 -0.1193 3.0242 -1.3008 7 14 0.5069 4.9761 0.4558 8 6 2.9947 3.3126 0.0008 9 7 4.0667 2.4605 0.0011 10 6 3.6348 1.1589 0.0005 11 7 4.2720 -0.0065 0.0000 12 6 3.6267 -1.1501 -0.0001 13 6 2.2274 -1.1975 -0.0005 14 6 1.5225 -2.4950 -0.0005 15 8 0.3123 -2.5293 -0.1111 16 7 2.2207 -3.6413 0.1217 17 6 1.5215 -4.9286 0.1211 18 1 0.4788 -4.8441 0.4276 19 6 1.7221 -5.7380 -1.1709 20 6 2.9625 -6.3518 -0.5006 21 1 3.8776 -5.7841 -0.6696 22 6 3.1316 -7.8472 -0.7767 23 7 3.8854 -8.0323 -2.0191 24 6 5.0176 -8.7527 -2.1609 25 6 5.3967 -8.6742 -3.4575 26 6 4.4646 -7.8781 -4.1310 27 7 3.5552 -7.4972 -3.2709 28 6 2.2883 -6.0465 0.8473 29 1 -0.3634 -0.1149 -1.0211 30 1 -0.3634 -0.8270 0.6102 31 1 -0.3633 0.9418 0.4112 32 1 -0.1550 2.6307 0.7272 33 1 -1.0215 3.3647 -1.3745 34 1 1.3322 5.7230 -0.5271 35 1 -0.8694 5.5329 0.4906 36 1 3.0596 4.3907 -0.0030 37 1 4.9964 2.7374 0.0010 38 1 4.1869 -2.0734 0.0000 39 1 3.1863 -3.6139 0.2101 40 1 0.9273 -6.4591 -1.3623 41 1 1.9548 -5.1226 -2.0399 42 1 3.6723 -8.3102 0.0488 43 1 2.1503 -8.3118 -0.8743 44 1 5.5295 -9.2948 -1.3795 45 1 6.2656 -9.1434 -3.8951 46 1 4.4884 -7.6257 -5.1809 47 1 2.9781 -5.6801 1.6076 48 1 1.6484 -6.8520 1.2077 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_12890568.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:34:38 Heat of formation + Delta-G solvation = 124.254019 kcal Electronic energy + Delta-G solvation = -32451.557500 eV Core-core repulsion = 28090.843544 eV Total energy + Delta-G solvation = -4360.713956 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.89126 -42.04260 -41.32546 -39.78746 -38.62985 -37.83452 -35.42912 -34.89203 -33.57029 -32.06805 -31.13789 -30.82378 -29.04454 -28.40372 -26.68186 -26.48311 -25.02650 -24.32027 -23.68079 -22.11265 -21.88742 -21.56894 -20.45393 -20.30799 -19.28156 -18.78477 -18.50822 -18.10925 -17.60854 -17.21271 -16.74915 -16.52637 -16.40752 -15.86949 -15.79003 -15.52332 -15.38379 -15.12285 -14.91482 -14.80207 -14.70810 -14.41561 -14.17094 -14.09680 -13.78380 -13.71558 -13.58444 -13.48163 -13.37459 -13.31493 -13.05670 -12.77271 -12.65862 -12.15164 -11.99039 -11.63070 -11.56143 -11.27462 -11.19875 -11.18496 -10.51959 -10.31434 -10.25532 -10.13263 -9.66060 -9.46135 -9.15780 -4.86508 -0.38796 -0.12423 1.03927 1.31188 1.36834 1.59527 1.68677 1.70463 1.74653 1.97520 1.99084 2.00276 2.70162 3.25656 3.35573 3.37777 3.49406 3.56056 3.63167 3.65983 3.71802 3.76272 3.83202 4.04595 4.09673 4.11198 4.15337 4.25533 4.27545 4.29127 4.38237 4.50454 4.55640 4.67018 4.70841 4.76376 4.77336 4.81136 4.86830 4.93813 4.95378 5.05815 5.08569 5.12439 5.18068 5.19157 5.20366 5.36509 5.58415 5.69215 5.77520 6.17904 6.22657 6.41829 6.65223 6.78302 6.82019 7.11900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.063 3.937 3 C -0.167 4.167 4 C -0.160 4.160 5 C -0.062 4.062 6 O -0.559 6.559 7 Si 0.778 3.222 8 C 0.088 3.912 9 N -0.559 5.559 10 C 0.289 3.711 11 N -0.515 5.515 12 C 0.180 3.820 13 C -0.242 4.242 14 C 0.573 3.427 15 O -0.564 6.564 16 N -0.697 5.697 17 C 0.113 3.887 18 H 0.091 0.909 19 C -0.137 4.137 20 C -0.111 4.111 21 H 0.089 0.911 22 C 0.134 3.866 23 N -0.375 5.375 24 C 0.053 3.947 25 C -0.294 4.294 26 C 0.023 3.977 27 N -0.331 5.331 28 C -0.115 4.115 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.392 0.608 34 H -0.278 1.278 35 H -0.290 1.290 36 H 0.218 0.782 37 H 0.439 0.561 38 H 0.191 0.809 39 H 0.411 0.589 40 H 0.090 0.910 41 H 0.046 0.954 42 H 0.131 0.869 43 H 0.088 0.912 44 H 0.207 0.793 45 H 0.159 0.841 46 H 0.191 0.809 47 H 0.095 0.905 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.531 0.205 6.967 8.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.055 3.945 3 C -0.174 4.174 4 C -0.167 4.167 5 C -0.170 4.170 6 O -0.368 6.368 7 Si 0.681 3.319 8 C -0.038 4.038 9 N -0.166 5.166 10 C 0.055 3.945 11 N -0.228 5.228 12 C 0.011 3.989 13 C -0.249 4.249 14 C 0.362 3.638 15 O -0.444 6.444 16 N -0.348 5.348 17 C 0.007 3.993 18 H 0.109 0.891 19 C -0.176 4.176 20 C -0.130 4.130 21 H 0.107 0.893 22 C 0.014 3.986 23 N -0.157 5.157 24 C -0.093 4.093 25 C -0.323 4.323 26 C -0.162 4.162 27 N -0.153 5.153 28 C -0.154 4.154 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.242 0.758 34 H -0.204 1.204 35 H -0.217 1.217 36 H 0.234 0.766 37 H 0.280 0.720 38 H 0.207 0.793 39 H 0.248 0.752 40 H 0.108 0.892 41 H 0.065 0.935 42 H 0.149 0.851 43 H 0.106 0.894 44 H 0.224 0.776 45 H 0.176 0.824 46 H 0.207 0.793 47 H 0.113 0.887 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.957 1.557 6.844 8.057 hybrid contribution -0.246 -0.763 -1.569 1.762 sum 3.711 0.793 5.275 6.498 Atomic orbital electron populations 1.21010 0.89118 1.03591 1.03025 1.20071 0.97277 0.89983 0.87166 1.19766 0.93383 0.94407 1.09855 1.19734 0.94557 0.89950 1.12436 1.24568 0.91490 1.13394 0.87522 1.86604 1.34882 1.84566 1.30756 0.94163 0.80380 0.70334 0.87058 1.22246 0.84120 0.97125 1.00348 1.41561 1.10545 1.01708 1.62769 1.18749 0.89492 0.86819 0.99405 1.66503 1.40809 0.96412 1.19113 1.22910 0.89749 0.95202 0.91013 1.20490 0.95408 0.93381 1.15659 1.17969 0.86460 0.83918 0.75474 1.90734 1.15042 1.87503 1.51120 1.45437 1.10999 1.04576 1.73823 1.21916 0.97607 0.82162 0.97570 0.89125 1.23378 0.98342 0.99121 0.96757 1.22780 0.98115 0.94684 0.97386 0.89263 1.22081 0.97564 0.97204 0.81732 1.49003 1.20328 1.38497 1.07897 1.23191 0.89357 0.97090 0.99685 1.21846 1.05748 1.10433 0.94263 1.24292 0.93357 0.97938 1.00593 1.77346 1.24725 1.22831 0.90396 1.23291 0.99252 0.97365 0.95448 0.91243 0.89610 0.90259 0.90005 0.75842 1.20447 1.21660 0.76598 0.71956 0.79267 0.75152 0.89174 0.93537 0.85079 0.89375 0.77613 0.82359 0.79252 0.88653 0.86321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 8.68 71.23 0.62 -0.36 16 2 C 0.06 0.60 5.98 -19.25 -0.12 0.49 16 3 C -0.17 -1.36 6.16 -20.19 -0.12 -1.48 16 4 C -0.16 -0.52 5.61 -18.63 -0.10 -0.63 16 5 C -0.06 -0.01 2.05 71.24 0.15 0.14 16 6 O -0.56 -1.99 12.86 -148.98 -1.92 -3.91 16 7 Si 0.78 -3.50 30.80 68.60 2.11 -1.39 16 8 C 0.09 -0.17 10.43 82.97 0.87 0.70 16 9 N -0.56 0.20 6.04 -192.25 -1.16 -0.96 16 10 C 0.29 1.92 8.42 134.03 1.13 3.05 16 11 N -0.52 -3.58 10.37 -191.75 -1.99 -5.57 16 12 C 0.18 0.72 10.67 85.20 0.91 1.63 16 13 C -0.24 -1.80 5.89 -19.99 -0.12 -1.91 16 14 C 0.57 4.47 7.72 86.73 0.67 5.14 16 15 O -0.56 -8.11 13.10 -3.96 -0.05 -8.16 16 16 N -0.70 -0.48 5.21 -443.08 -2.31 -2.79 16 17 C 0.11 -0.03 4.32 45.52 0.20 0.16 16 18 H 0.09 0.32 7.46 -2.38 -0.02 0.30 16 19 C -0.14 -0.17 7.43 31.12 0.23 0.06 16 20 C -0.11 0.49 3.71 -10.27 -0.04 0.45 16 21 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 22 C 0.13 -0.68 6.35 86.38 0.55 -0.13 16 23 N -0.37 -0.69 3.68 -348.05 -1.28 -1.97 16 24 C 0.05 -0.04 11.45 83.54 0.96 0.92 16 25 C -0.29 -0.62 10.80 21.99 0.24 -0.38 16 26 C 0.02 0.13 12.03 85.24 1.02 1.16 16 27 N -0.33 -2.72 12.42 -57.02 -0.71 -3.43 16 28 C -0.12 0.89 7.39 31.12 0.23 1.12 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.09 0.93 5.97 -2.38 -0.01 0.92 16 31 H 0.08 0.41 5.05 -2.39 -0.01 0.40 16 32 H 0.08 -0.13 6.05 -2.39 -0.01 -0.14 16 33 H 0.39 -1.68 8.74 -74.05 -0.65 -2.32 16 34 H -0.28 0.07 7.04 99.48 0.70 0.77 16 35 H -0.29 -0.22 7.11 99.48 0.71 0.49 16 36 H 0.22 -2.05 6.31 -2.91 -0.02 -2.06 16 37 H 0.44 -2.75 8.96 -92.70 -0.83 -3.58 16 38 H 0.19 -0.73 6.43 -2.91 -0.02 -0.75 16 39 H 0.41 -1.95 6.78 -92.71 -0.63 -2.58 16 40 H 0.09 0.13 7.90 -2.39 -0.02 0.12 16 41 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 42 H 0.13 -1.54 8.07 -2.39 -0.02 -1.56 16 43 H 0.09 -0.44 7.84 -2.39 -0.02 -0.46 16 44 H 0.21 -1.85 8.06 -2.91 -0.02 -1.87 16 45 H 0.16 -0.25 8.06 -2.91 -0.02 -0.28 16 46 H 0.19 0.26 8.06 -2.91 -0.02 0.23 16 47 H 0.09 -0.95 8.14 -2.39 -0.02 -0.97 16 48 H 0.12 -1.26 8.10 -2.39 -0.02 -1.28 16 Total: 0.00 -30.80 394.11 -1.06 -31.85 By element: Atomic # 1 Polarization: -12.77 SS G_CDS: -1.02 Total: -13.79 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 7.26 Total: 10.11 kcal Atomic # 7 Polarization: -7.27 SS G_CDS: -7.45 Total: -14.72 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: -1.97 Total: -12.07 kcal Atomic # 14 Polarization: -3.50 SS G_CDS: 2.11 Total: -1.39 kcal Total: -30.80 -1.06 -31.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_12890568.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.109 kcal (2) G-P(sol) polarization free energy of solvation -30.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds