Wall clock time and date at job start Sun Mar 7 2021 04:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86303 * 109.47163 * 2 1 4 4 C 1.50697 * 109.47766 * 120.00240 * 2 1 3 5 5 C 1.38901 * 119.67811 * 244.98205 * 4 2 1 6 6 C 1.36469 * 120.61643 * 180.02562 * 5 4 2 7 7 C 1.40065 * 119.83144 * 0.02562 * 6 5 4 8 8 C 1.41589 * 133.38300 * 179.97438 * 7 6 5 9 9 C 1.35868 * 107.72715 * 179.97438 * 8 7 6 10 10 C 1.47061 * 125.42360 * 179.97438 * 9 8 7 11 11 O 1.21649 * 120.00212 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99589 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99552 * 180.02562 * 12 10 9 14 14 H 1.08993 * 112.91182 * 336.24587 * 13 12 10 15 15 C 1.53778 * 113.61560 * 107.49938 * 13 12 10 16 16 C 1.53778 * 87.08449 * 89.11214 * 15 13 12 17 17 H 1.08998 * 113.61879 * 270.88747 * 16 15 13 18 18 C 1.53003 * 113.61726 * 139.98071 * 16 15 13 19 19 N 1.46498 * 109.47015 * 87.50646 * 18 16 15 20 20 C 1.34946 * 126.03559 * 125.00161 * 19 18 16 21 21 C 1.35318 * 107.74154 * 179.97438 * 20 19 18 22 22 C 1.39874 * 107.92309 * 359.97438 * 21 20 19 23 23 N 1.30833 * 108.20201 * 359.74253 * 22 21 20 24 24 C 1.53784 * 113.61123 * 204.99529 * 13 12 10 25 25 N 1.38142 * 109.14758 * 0.24488 * 9 8 7 26 26 C 1.37494 * 108.78956 * 359.59817 * 25 9 8 27 27 C 1.37710 * 119.67341 * 64.99673 * 4 2 1 28 28 H 0.96698 * 114.00127 * 59.99572 * 1 2 3 29 29 H 1.09004 * 109.46991 * 240.00495 * 2 1 3 30 30 H 1.48504 * 109.99942 * 298.68704 * 3 2 1 31 31 H 1.48500 * 109.99828 * 60.00107 * 3 2 1 32 32 H 1.08004 * 119.68674 * 0.04006 * 5 4 2 33 33 H 1.08004 * 120.08509 * 179.97438 * 6 5 4 34 34 H 1.08003 * 126.13850 * 359.97438 * 8 7 6 35 35 H 0.96998 * 120.00189 * 359.97438 * 12 10 9 36 36 H 1.08999 * 113.61526 * 334.56550 * 15 13 12 37 37 H 1.08999 * 113.69218 * 203.67174 * 15 13 12 38 38 H 1.08996 * 109.47095 * 207.50574 * 18 16 15 39 39 H 1.09005 * 109.46621 * 327.50388 * 18 16 15 40 40 H 1.07993 * 126.13015 * 359.95755 * 20 19 18 41 41 H 1.08003 * 126.03831 * 180.02562 * 21 20 19 42 42 H 1.07996 * 125.89475 * 179.97438 * 22 21 20 43 43 H 1.09004 * 113.61451 * 156.33708 * 24 13 12 44 44 H 1.08994 * 113.61477 * 25.43010 * 24 13 12 45 45 H 0.97001 * 125.60792 * 179.72178 * 25 9 8 46 46 H 1.08002 * 120.09865 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9315 -0.7104 1.2304 5 6 2.6419 -0.0025 2.1913 6 6 3.1063 -0.6268 3.3125 7 6 2.8663 -1.9941 3.4987 8 6 3.2048 -2.9101 4.5238 9 6 2.7057 -4.1247 4.1747 10 6 2.8345 -5.3583 4.9648 11 8 3.4280 -5.3414 6.0266 12 7 2.2951 -6.5076 4.5125 13 6 2.4230 -7.7364 5.2998 14 1 3.2764 -7.7192 5.9776 15 6 1.1117 -8.1769 5.9716 16 6 0.8111 -8.9676 4.6875 17 1 0.2754 -8.3900 3.9342 18 6 0.1826 -10.3387 4.9448 19 7 -1.2732 -10.1999 5.0318 20 6 -2.1804 -10.8760 4.2963 21 6 -3.4111 -10.4623 4.6777 22 6 -3.2504 -9.5010 5.6809 23 7 -1.9695 -9.3471 5.8981 24 6 2.3308 -9.0199 4.4578 25 7 2.0633 -4.0174 2.9565 26 6 2.1455 -2.7143 2.5257 27 6 1.6820 -2.0552 1.3908 28 1 -0.3933 0.4417 -0.7650 29 1 1.7923 -0.5138 -0.8901 30 1 1.5878 2.4586 -1.2242 31 1 1.5615 2.4679 1.2085 32 1 2.8284 1.0519 2.0499 33 1 3.6581 -0.0681 4.0540 34 1 3.7601 -2.6841 5.4222 35 1 1.8216 -6.5210 3.6660 36 1 0.4167 -7.3568 6.1521 37 1 1.2591 -8.8075 6.8483 38 1 0.4351 -11.0134 4.1269 39 1 0.5657 -10.7439 5.8815 40 1 -1.9632 -11.6145 3.5390 41 1 -4.3514 -10.8131 4.2785 42 1 -4.0464 -8.9789 6.1909 43 1 2.8129 -9.8812 4.9203 44 1 2.6200 -8.8805 3.4162 45 1 1.6246 -4.7419 2.4836 46 1 1.1292 -2.5971 0.6376 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688104_13158378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:34:49 Heat of formation + Delta-G solvation = 110.487452 kcal Electronic energy + Delta-G solvation = -29517.295294 eV Core-core repulsion = 25376.947904 eV Total energy + Delta-G solvation = -4140.347389 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.68049 -42.09410 -41.14986 -39.55441 -38.76262 -37.07537 -35.20086 -33.61936 -33.23373 -31.19077 -30.92746 -30.40784 -28.75008 -26.94916 -26.87085 -24.87427 -23.91110 -23.12435 -21.96138 -21.91742 -21.65845 -21.22511 -20.48033 -19.58093 -18.56718 -18.26518 -17.96461 -17.26096 -16.98278 -16.62149 -16.41234 -16.24773 -15.89868 -15.68130 -15.33123 -15.05584 -15.00531 -14.89068 -14.76285 -14.70658 -14.42199 -14.23169 -13.85866 -13.83128 -13.66479 -13.54658 -13.47364 -13.00274 -12.70305 -12.38420 -12.31361 -12.09313 -11.79688 -11.63461 -11.60049 -11.39251 -11.25790 -10.90014 -10.50083 -10.34040 -10.24752 -9.50837 -9.28833 -8.79007 -4.95258 -0.31047 0.56254 0.98449 1.01830 1.27080 1.55014 1.59938 1.75767 1.88623 1.97116 1.97211 2.26032 2.75859 3.14261 3.25601 3.33920 3.47885 3.53078 3.62081 3.65176 3.85170 3.88195 3.91434 4.00329 4.04768 4.19010 4.20071 4.26401 4.31628 4.39706 4.45838 4.47581 4.55387 4.58607 4.66502 4.69573 4.80628 4.88442 4.92898 4.93502 4.99175 5.01999 5.12059 5.30829 5.42091 5.44027 5.58215 5.64163 5.74842 5.99211 6.07215 6.19204 6.34405 6.40919 6.80322 6.98711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.536 6.536 2 C -0.077 4.077 3 Si 0.688 3.312 4 C -0.040 4.040 5 C -0.144 4.144 6 C -0.050 4.050 7 C -0.116 4.116 8 C -0.097 4.097 9 C 0.011 3.989 10 C 0.589 3.411 11 O -0.514 6.514 12 N -0.712 5.712 13 C 0.119 3.881 14 H 0.111 0.889 15 C -0.133 4.133 16 C -0.122 4.122 17 H 0.093 0.907 18 C 0.142 3.858 19 N -0.372 5.372 20 C 0.049 3.951 21 C -0.274 4.274 22 C 0.042 3.958 23 N -0.289 5.289 24 C -0.137 4.137 25 N -0.579 5.579 26 C 0.116 3.884 27 C -0.104 4.104 28 H 0.380 0.620 29 H 0.076 0.924 30 H -0.263 1.263 31 H -0.254 1.254 32 H 0.130 0.870 33 H 0.133 0.867 34 H 0.159 0.841 35 H 0.396 0.604 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.172 0.828 41 H 0.147 0.853 42 H 0.182 0.818 43 H 0.103 0.897 44 H 0.078 0.922 45 H 0.416 0.584 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.405 -3.098 -5.982 6.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.343 6.343 2 C -0.186 4.186 3 Si 0.590 3.410 4 C -0.042 4.042 5 C -0.162 4.162 6 C -0.069 4.069 7 C -0.121 4.121 8 C -0.124 4.124 9 C -0.097 4.097 10 C 0.376 3.624 11 O -0.389 6.389 12 N -0.363 5.363 13 C 0.014 3.986 14 H 0.129 0.871 15 C -0.172 4.172 16 C -0.141 4.141 17 H 0.111 0.889 18 C 0.021 3.979 19 N -0.155 5.155 20 C -0.097 4.097 21 C -0.304 4.304 22 C -0.145 4.145 23 N -0.110 5.110 24 C -0.176 4.176 25 N -0.184 5.184 26 C 0.007 3.993 27 C -0.125 4.125 28 H 0.228 0.772 29 H 0.094 0.906 30 H -0.188 1.188 31 H -0.179 1.179 32 H 0.147 0.853 33 H 0.151 0.849 34 H 0.177 0.823 35 H 0.229 0.771 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.106 0.894 40 H 0.189 0.811 41 H 0.164 0.836 42 H 0.199 0.801 43 H 0.121 0.879 44 H 0.097 0.903 45 H 0.254 0.746 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.732 -2.148 -3.980 5.283 hybrid contribution -2.484 -1.160 -1.843 3.303 sum 0.248 -3.308 -5.823 6.702 Atomic orbital electron populations 1.86603 1.17760 1.80191 1.49792 1.24826 0.84504 1.11206 0.98074 0.94877 0.91659 0.74361 0.80131 1.18915 0.97679 0.92648 0.94972 1.20470 1.01439 0.99692 0.94631 1.20355 0.97665 0.91921 0.96921 1.18218 1.03657 0.94380 0.95850 1.20979 1.01803 0.89859 0.99764 1.20047 1.05067 0.95914 0.88711 1.17174 0.78674 0.81702 0.84882 1.90884 1.41678 1.84742 1.21549 1.45531 1.57592 1.08576 1.24566 1.21885 0.99899 0.82745 0.94104 0.87113 1.23409 0.96768 1.00328 0.96704 1.22909 0.95572 0.95821 0.99841 0.88912 1.21780 0.74651 0.97935 1.03556 1.48745 1.06228 1.31487 1.29047 1.22603 0.89741 0.98941 0.98377 1.21564 0.98006 1.05589 1.05210 1.23957 0.94234 0.98351 0.97926 1.77406 1.05694 1.14085 1.13864 1.23366 0.94858 0.98057 1.01283 1.41869 1.49297 1.08837 1.18383 1.18273 1.00680 0.83863 0.96532 1.19829 1.02493 0.94012 0.96123 0.77243 0.90573 1.18802 1.17854 0.85260 0.84875 0.82319 0.77058 0.90492 0.88642 0.88409 0.89362 0.81068 0.83563 0.80116 0.87853 0.90332 0.74613 0.85733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.56 12.80 -35.23 -0.45 -1.01 16 2 C -0.08 0.02 2.78 36.00 0.10 0.12 16 3 Si 0.69 -0.70 29.82 -169.99 -5.07 -5.77 16 4 C -0.04 -0.05 5.39 -104.57 -0.56 -0.62 16 5 C -0.14 -0.12 8.59 -39.97 -0.34 -0.46 16 6 C -0.05 -0.06 10.06 -39.53 -0.40 -0.45 16 7 C -0.12 -0.28 6.16 -106.93 -0.66 -0.93 16 8 C -0.10 -0.24 10.53 -39.15 -0.41 -0.66 16 9 C 0.01 0.02 6.97 -82.29 -0.57 -0.55 16 10 C 0.59 1.41 7.80 -12.68 -0.10 1.31 16 11 O -0.51 -3.07 16.44 5.23 0.09 -2.99 16 12 N -0.71 0.55 5.26 -54.20 -0.29 0.27 16 13 C 0.12 -0.13 4.32 -67.12 -0.29 -0.42 16 14 H 0.11 0.05 7.46 -51.93 -0.39 -0.34 16 15 C -0.13 0.08 7.43 -25.92 -0.19 -0.12 16 16 C -0.12 0.30 3.71 -89.80 -0.33 -0.03 16 17 H 0.09 -0.16 8.14 -51.93 -0.42 -0.58 16 18 C 0.14 -0.33 6.35 -4.04 -0.03 -0.36 16 19 N -0.37 -0.28 3.68 -61.37 -0.23 -0.50 16 20 C 0.05 -0.01 11.45 -17.22 -0.20 -0.20 16 21 C -0.27 -0.21 10.80 -40.01 -0.43 -0.65 16 22 C 0.04 0.08 12.03 -17.37 -0.21 -0.13 16 23 N -0.29 -0.92 12.42 30.62 0.38 -0.54 16 24 C -0.14 0.51 7.39 -25.91 -0.19 0.31 16 25 N -0.58 0.02 6.07 -7.35 -0.04 -0.03 16 26 C 0.12 0.21 7.25 -83.97 -0.61 -0.40 16 27 C -0.10 -0.14 9.69 -39.42 -0.38 -0.52 16 28 H 0.38 -1.12 8.74 45.56 0.40 -0.72 16 29 H 0.08 -0.16 7.96 -51.93 -0.41 -0.57 16 30 H -0.26 -0.25 7.11 56.52 0.40 0.15 16 31 H -0.25 -0.54 7.04 56.52 0.40 -0.14 16 32 H 0.13 -0.12 4.81 -52.48 -0.25 -0.37 16 33 H 0.13 -0.14 8.06 -52.48 -0.42 -0.56 16 34 H 0.16 0.28 8.06 -52.48 -0.42 -0.15 16 35 H 0.40 -1.27 7.76 -40.82 -0.32 -1.59 16 36 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 37 H 0.10 -0.06 7.89 -51.93 -0.41 -0.47 16 38 H 0.10 -0.46 8.07 -51.93 -0.42 -0.88 16 39 H 0.09 -0.22 7.84 -51.93 -0.41 -0.63 16 40 H 0.17 -0.59 8.06 -52.49 -0.42 -1.01 16 41 H 0.15 -0.14 8.06 -52.48 -0.42 -0.56 16 42 H 0.18 -0.08 8.06 -52.49 -0.42 -0.51 16 43 H 0.10 -0.49 8.10 -51.93 -0.42 -0.91 16 44 H 0.08 -0.33 8.14 -51.93 -0.42 -0.76 16 45 H 0.42 -1.28 8.12 -40.82 -0.33 -1.61 16 46 H 0.12 0.01 8.06 -52.49 -0.42 -0.42 16 LS Contribution 388.85 15.07 5.86 5.86 Total: 0.00 -10.84 388.85 -11.52 -22.37 By element: Atomic # 1 Polarization: -6.94 SS G_CDS: -5.97 Total: -12.91 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -5.81 Total: -4.75 kcal Atomic # 7 Polarization: -0.63 SS G_CDS: -0.17 Total: -0.80 kcal Atomic # 8 Polarization: -3.63 SS G_CDS: -0.36 Total: -4.00 kcal Atomic # 14 Polarization: -0.70 SS G_CDS: -5.07 Total: -5.77 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -10.84 -11.52 -22.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_13158378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.857 kcal (2) G-P(sol) polarization free energy of solvation -10.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds