Wall clock time and date at job start Sun Mar 7 2021 04:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86303 * 109.47163 * 2 1 4 4 C 1.50697 * 109.47766 * 120.00240 * 2 1 3 5 5 C 1.38901 * 119.67811 * 244.98205 * 4 2 1 6 6 C 1.36469 * 120.61643 * 180.02562 * 5 4 2 7 7 C 1.40065 * 119.83144 * 0.02562 * 6 5 4 8 8 C 1.41589 * 133.38300 * 179.97438 * 7 6 5 9 9 C 1.35868 * 107.72715 * 179.97438 * 8 7 6 10 10 C 1.47061 * 125.42360 * 179.97438 * 9 8 7 11 11 O 1.21649 * 120.00212 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99589 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99552 * 180.02562 * 12 10 9 14 14 H 1.08993 * 112.91182 * 336.24587 * 13 12 10 15 15 C 1.53778 * 113.61560 * 107.49938 * 13 12 10 16 16 C 1.53778 * 87.08449 * 89.11214 * 15 13 12 17 17 H 1.08998 * 113.61879 * 270.88747 * 16 15 13 18 18 C 1.53003 * 113.61726 * 139.98071 * 16 15 13 19 19 N 1.46498 * 109.47015 * 87.50646 * 18 16 15 20 20 C 1.34946 * 126.03559 * 125.00161 * 19 18 16 21 21 C 1.35318 * 107.74154 * 179.97438 * 20 19 18 22 22 C 1.39874 * 107.92309 * 359.97438 * 21 20 19 23 23 N 1.30833 * 108.20201 * 359.74253 * 22 21 20 24 24 C 1.53784 * 113.61123 * 204.99529 * 13 12 10 25 25 N 1.38142 * 109.14758 * 0.24488 * 9 8 7 26 26 C 1.37494 * 108.78956 * 359.59817 * 25 9 8 27 27 C 1.37710 * 119.67341 * 64.99673 * 4 2 1 28 28 H 0.96698 * 114.00127 * 59.99572 * 1 2 3 29 29 H 1.09004 * 109.46991 * 240.00495 * 2 1 3 30 30 H 1.48504 * 109.99942 * 298.68704 * 3 2 1 31 31 H 1.48500 * 109.99828 * 60.00107 * 3 2 1 32 32 H 1.08004 * 119.68674 * 0.04006 * 5 4 2 33 33 H 1.08004 * 120.08509 * 179.97438 * 6 5 4 34 34 H 1.08003 * 126.13850 * 359.97438 * 8 7 6 35 35 H 0.96998 * 120.00189 * 359.97438 * 12 10 9 36 36 H 1.08999 * 113.61526 * 334.56550 * 15 13 12 37 37 H 1.08999 * 113.69218 * 203.67174 * 15 13 12 38 38 H 1.08996 * 109.47095 * 207.50574 * 18 16 15 39 39 H 1.09005 * 109.46621 * 327.50388 * 18 16 15 40 40 H 1.07993 * 126.13015 * 359.95755 * 20 19 18 41 41 H 1.08003 * 126.03831 * 180.02562 * 21 20 19 42 42 H 1.07996 * 125.89475 * 179.97438 * 22 21 20 43 43 H 1.09004 * 113.61451 * 156.33708 * 24 13 12 44 44 H 1.08994 * 113.61477 * 25.43010 * 24 13 12 45 45 H 0.97001 * 125.60792 * 179.72178 * 25 9 8 46 46 H 1.08002 * 120.09865 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9315 -0.7104 1.2304 5 6 2.6419 -0.0025 2.1913 6 6 3.1063 -0.6268 3.3125 7 6 2.8663 -1.9941 3.4987 8 6 3.2048 -2.9101 4.5238 9 6 2.7057 -4.1247 4.1747 10 6 2.8345 -5.3583 4.9648 11 8 3.4280 -5.3414 6.0266 12 7 2.2951 -6.5076 4.5125 13 6 2.4230 -7.7364 5.2998 14 1 3.2764 -7.7192 5.9776 15 6 1.1117 -8.1769 5.9716 16 6 0.8111 -8.9676 4.6875 17 1 0.2754 -8.3900 3.9342 18 6 0.1826 -10.3387 4.9448 19 7 -1.2732 -10.1999 5.0318 20 6 -2.1804 -10.8760 4.2963 21 6 -3.4111 -10.4623 4.6777 22 6 -3.2504 -9.5010 5.6809 23 7 -1.9695 -9.3471 5.8981 24 6 2.3308 -9.0199 4.4578 25 7 2.0633 -4.0174 2.9565 26 6 2.1455 -2.7143 2.5257 27 6 1.6820 -2.0552 1.3908 28 1 -0.3933 0.4417 -0.7650 29 1 1.7923 -0.5138 -0.8901 30 1 1.5878 2.4586 -1.2242 31 1 1.5615 2.4679 1.2085 32 1 2.8284 1.0519 2.0499 33 1 3.6581 -0.0681 4.0540 34 1 3.7601 -2.6841 5.4222 35 1 1.8216 -6.5210 3.6660 36 1 0.4167 -7.3568 6.1521 37 1 1.2591 -8.8075 6.8483 38 1 0.4351 -11.0134 4.1269 39 1 0.5657 -10.7439 5.8815 40 1 -1.9632 -11.6145 3.5390 41 1 -4.3514 -10.8131 4.2785 42 1 -4.0464 -8.9789 6.1909 43 1 2.8129 -9.8812 4.9203 44 1 2.6200 -8.8805 3.4162 45 1 1.6246 -4.7419 2.4836 46 1 1.1292 -2.5971 0.6376 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_13158378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:34:48 Heat of formation + Delta-G solvation = 109.457561 kcal Electronic energy + Delta-G solvation = -29517.339953 eV Core-core repulsion = 25376.947904 eV Total energy + Delta-G solvation = -4140.392049 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.153 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.76747 -42.07186 -41.18372 -39.60202 -38.82443 -37.11057 -35.23944 -33.62770 -33.30459 -31.24899 -30.93374 -30.47467 -28.69741 -26.97839 -26.74233 -24.87335 -23.90155 -23.20448 -21.98606 -21.92892 -21.65810 -21.31272 -20.42831 -19.64041 -18.55915 -18.21644 -18.00856 -17.27244 -17.02449 -16.58395 -16.53959 -16.25665 -15.89230 -15.67657 -15.35417 -15.10746 -15.04566 -14.88347 -14.79773 -14.73778 -14.40509 -14.30567 -13.90199 -13.74232 -13.60496 -13.53667 -13.43435 -12.88103 -12.74605 -12.34902 -12.26907 -12.15787 -11.73880 -11.69520 -11.61228 -11.48028 -11.27906 -11.00019 -10.47284 -10.37083 -10.29553 -9.50078 -9.37301 -8.86826 -4.88242 -0.41958 0.48915 0.88757 0.99874 1.31800 1.62799 1.66293 1.68571 1.88045 1.93842 1.99153 2.10296 2.69596 3.29891 3.39048 3.40820 3.50104 3.61624 3.63862 3.73771 3.84625 3.98852 4.00752 4.07322 4.17763 4.19419 4.27107 4.33181 4.40294 4.41441 4.45188 4.58236 4.62995 4.71169 4.76347 4.77935 4.84799 4.89855 4.94845 4.95460 5.00367 5.05247 5.14572 5.26422 5.36219 5.44820 5.51217 5.54374 5.73714 5.93741 6.17500 6.18837 6.36401 6.60344 6.78059 6.87140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.083 4.083 3 Si 0.766 3.234 4 C -0.051 4.051 5 C -0.150 4.150 6 C -0.058 4.058 7 C -0.135 4.135 8 C -0.115 4.115 9 C 0.008 3.992 10 C 0.588 3.412 11 O -0.558 6.558 12 N -0.696 5.696 13 C 0.109 3.891 14 H 0.094 0.906 15 C -0.137 4.137 16 C -0.111 4.111 17 H 0.088 0.912 18 C 0.134 3.866 19 N -0.375 5.375 20 C 0.053 3.947 21 C -0.293 4.293 22 C 0.024 3.976 23 N -0.331 5.331 24 C -0.114 4.114 25 N -0.564 5.564 26 C 0.108 3.892 27 C -0.111 4.111 28 H 0.395 0.605 29 H 0.100 0.900 30 H -0.287 1.287 31 H -0.299 1.299 32 H 0.144 0.856 33 H 0.149 0.851 34 H 0.157 0.843 35 H 0.409 0.591 36 H 0.046 0.954 37 H 0.093 0.907 38 H 0.132 0.868 39 H 0.089 0.911 40 H 0.207 0.793 41 H 0.159 0.841 42 H 0.191 0.809 43 H 0.121 0.879 44 H 0.095 0.905 45 H 0.430 0.570 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.620 -4.490 -8.198 9.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.192 4.192 3 Si 0.671 3.329 4 C -0.053 4.053 5 C -0.168 4.168 6 C -0.076 4.076 7 C -0.140 4.140 8 C -0.142 4.142 9 C -0.101 4.101 10 C 0.376 3.624 11 O -0.436 6.436 12 N -0.346 5.346 13 C 0.004 3.996 14 H 0.112 0.888 15 C -0.176 4.176 16 C -0.130 4.130 17 H 0.106 0.894 18 C 0.014 3.986 19 N -0.158 5.158 20 C -0.093 4.093 21 C -0.323 4.323 22 C -0.161 4.161 23 N -0.153 5.153 24 C -0.152 4.152 25 N -0.170 5.170 26 C -0.003 4.003 27 C -0.131 4.131 28 H 0.246 0.754 29 H 0.117 0.883 30 H -0.214 1.214 31 H -0.227 1.227 32 H 0.161 0.839 33 H 0.167 0.833 34 H 0.175 0.825 35 H 0.246 0.754 36 H 0.065 0.935 37 H 0.111 0.889 38 H 0.150 0.850 39 H 0.107 0.893 40 H 0.224 0.776 41 H 0.177 0.823 42 H 0.208 0.792 43 H 0.139 0.861 44 H 0.113 0.887 45 H 0.271 0.729 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.924 -3.585 -6.251 7.776 hybrid contribution -2.606 -0.698 -1.144 2.931 sum 0.318 -4.283 -7.395 8.552 Atomic orbital electron populations 1.86555 1.18464 1.80702 1.51138 1.24996 0.84083 1.11818 0.98317 0.94004 0.90422 0.72204 0.76229 1.19214 0.97550 0.92889 0.95602 1.20691 1.01257 1.00385 0.94497 1.20614 0.97766 0.91723 0.97513 1.18432 1.04344 0.95095 0.96103 1.21109 1.02471 0.90518 1.00128 1.19956 1.05341 0.95542 0.89291 1.17280 0.78336 0.82468 0.84346 1.90856 1.43900 1.85424 1.23405 1.45428 1.56452 1.07919 1.24830 1.21994 0.98943 0.83766 0.94864 0.88805 1.23389 0.96407 0.99857 0.97930 1.22783 0.96522 0.95540 0.98131 0.89421 1.22075 0.73159 0.98349 1.05003 1.49002 1.07315 1.30959 1.28518 1.23192 0.89223 0.98685 0.98210 1.21856 0.99232 1.05793 1.05389 1.24298 0.94346 0.98940 0.98550 1.77340 1.06477 1.15876 1.15627 1.23297 0.93569 0.96592 1.01768 1.41756 1.48698 1.08908 1.17668 1.18434 1.00787 0.84345 0.96715 1.20009 1.02625 0.94252 0.96231 0.75423 0.88254 1.21421 1.22718 0.83929 0.83292 0.82545 0.75433 0.93487 0.88860 0.85045 0.89261 0.77605 0.82346 0.79227 0.86063 0.88658 0.72927 0.84479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.82 12.80 -148.98 -1.91 -2.72 16 2 C -0.08 0.11 2.78 71.23 0.20 0.31 16 3 Si 0.77 -1.80 29.82 68.60 2.05 0.24 16 4 C -0.05 -0.11 5.39 -19.83 -0.11 -0.22 16 5 C -0.15 -0.27 8.59 22.02 0.19 -0.08 16 6 C -0.06 -0.17 10.06 22.30 0.22 0.06 16 7 C -0.14 -0.78 6.16 -21.36 -0.13 -0.91 16 8 C -0.12 -0.78 10.53 22.55 0.24 -0.54 16 9 C 0.01 0.04 6.97 39.91 0.28 0.32 16 10 C 0.59 3.75 7.80 86.56 0.68 4.43 16 11 O -0.56 -8.07 16.44 -4.19 -0.07 -8.14 16 12 N -0.70 0.64 5.26 -443.64 -2.33 -1.69 16 13 C 0.11 -0.17 4.32 45.52 0.20 0.03 16 14 H 0.09 0.22 7.46 -2.39 -0.02 0.21 16 15 C -0.14 -0.01 7.43 31.12 0.23 0.22 16 16 C -0.11 0.62 3.71 -10.27 -0.04 0.58 16 17 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 18 C 0.13 -0.82 6.35 86.38 0.55 -0.27 16 19 N -0.38 -0.35 3.68 -348.07 -1.28 -1.63 16 20 C 0.05 -0.08 11.45 83.54 0.96 0.87 16 21 C -0.29 -0.41 10.80 21.99 0.24 -0.17 16 22 C 0.02 0.12 12.03 85.24 1.03 1.14 16 23 N -0.33 -2.44 12.42 -57.03 -0.71 -3.15 16 24 C -0.11 1.02 7.39 31.12 0.23 1.25 16 25 N -0.56 -0.15 6.07 -177.18 -1.08 -1.23 16 26 C 0.11 0.42 7.25 39.13 0.28 0.70 16 27 C -0.11 -0.27 9.69 22.37 0.22 -0.06 16 28 H 0.40 -2.61 8.74 -74.06 -0.65 -3.26 16 29 H 0.10 -0.59 7.96 -2.39 -0.02 -0.61 16 30 H -0.29 -0.47 7.11 99.48 0.71 0.24 16 31 H -0.30 -1.55 7.04 99.48 0.70 -0.85 16 32 H 0.14 -0.26 4.81 -2.91 -0.01 -0.27 16 33 H 0.15 -0.22 8.06 -2.91 -0.02 -0.24 16 34 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 35 H 0.41 -2.74 7.76 -92.71 -0.72 -3.46 16 36 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.09 0.02 7.89 -2.39 -0.02 0.00 16 38 H 0.13 -1.67 8.07 -2.39 -0.02 -1.69 16 39 H 0.09 -0.54 7.84 -2.38 -0.02 -0.55 16 40 H 0.21 -2.01 8.06 -2.91 -0.02 -2.04 16 41 H 0.16 -0.35 8.06 -2.91 -0.02 -0.38 16 42 H 0.19 0.13 8.06 -2.91 -0.02 0.11 16 43 H 0.12 -1.44 8.10 -2.39 -0.02 -1.46 16 44 H 0.09 -1.08 8.14 -2.39 -0.02 -1.10 16 45 H 0.43 -2.81 8.12 -92.71 -0.75 -3.56 16 46 H 0.14 -0.10 8.06 -2.91 -0.02 -0.13 16 Total: 0.00 -27.98 388.85 -0.91 -28.89 By element: Atomic # 1 Polarization: -17.19 SS G_CDS: -1.04 Total: -18.23 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 5.45 Total: 7.67 kcal Atomic # 7 Polarization: -2.31 SS G_CDS: -5.40 Total: -7.70 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -1.98 Total: -10.87 kcal Atomic # 14 Polarization: -1.80 SS G_CDS: 2.05 Total: 0.24 kcal Total: -27.98 -0.91 -28.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_13158378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.348 kcal (2) G-P(sol) polarization free energy of solvation -27.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds