Wall clock time and date at job start Sun Mar 7 2021 04:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86294 * 109.47558 * 2 1 4 4 C 1.50703 * 109.47188 * 120.00606 * 2 1 3 5 5 C 1.34704 * 125.66977 * 64.99184 * 4 2 1 6 6 C 1.40969 * 107.02909 * 179.75002 * 5 4 2 7 7 C 1.35933 * 106.74259 * 0.37397 * 6 5 4 8 8 C 1.47819 * 125.93003 * 179.88640 * 7 6 5 9 9 C 1.39177 * 119.99878 * 179.71751 * 8 7 6 10 10 C 1.39461 * 119.75302 * 180.02562 * 9 8 7 11 11 C 1.47567 * 120.11530 * 179.97438 * 10 9 8 12 12 O 1.21588 * 119.99563 * 180.02562 * 11 10 9 13 13 N 1.34774 * 120.00548 * 0.02562 * 11 10 9 14 14 C 1.46496 * 120.00483 * 180.02562 * 13 11 10 15 15 H 1.09009 * 112.84772 * 336.19364 * 14 13 11 16 16 C 1.53773 * 113.61608 * 107.50190 * 14 13 11 17 17 C 1.53774 * 87.08133 * 89.12028 * 16 14 13 18 18 H 1.09001 * 113.61604 * 270.88217 * 17 16 14 19 19 C 1.53003 * 113.61615 * 139.98422 * 17 16 14 20 20 N 1.46498 * 109.47325 * 87.50222 * 19 17 16 21 21 C 1.34945 * 126.03927 * 124.71807 * 20 19 17 22 22 C 1.35321 * 107.74632 * 179.83830 * 21 20 19 23 23 C 1.39865 * 107.92086 * 0.42111 * 22 21 20 24 24 N 1.30848 * 108.20084 * 359.74241 * 23 22 21 25 25 C 1.53777 * 113.61760 * 205.00374 * 14 13 11 26 26 C 1.40211 * 119.76319 * 359.97438 * 10 9 8 27 27 O 1.35647 * 120.00282 * 179.97438 * 26 10 9 28 28 C 1.38822 * 119.99018 * 0.02562 * 26 10 9 29 29 C 1.37764 * 120.24499 * 0.27477 * 28 26 10 30 30 O 1.34341 * 125.66026 * 244.97507 * 4 2 1 31 31 H 0.96701 * 114.00124 * 59.99610 * 1 2 3 32 32 H 1.09007 * 109.46691 * 239.99569 * 2 1 3 33 33 H 1.48498 * 109.99971 * 59.99858 * 3 2 1 34 34 H 1.48498 * 110.00281 * 181.32206 * 3 2 1 35 35 H 1.08007 * 126.48234 * 359.97438 * 5 4 2 36 36 H 1.08001 * 126.62681 * 180.26467 * 6 5 4 37 37 H 1.07999 * 120.12198 * 359.97438 * 9 8 7 38 38 H 0.97003 * 119.99246 * 0.02562 * 13 11 10 39 39 H 1.09006 * 113.61498 * 203.66373 * 16 14 13 40 40 H 1.09001 * 113.61904 * 334.56785 * 16 14 13 41 41 H 1.09006 * 109.46798 * 207.49781 * 19 17 16 42 42 H 1.08994 * 109.46836 * 327.49806 * 19 17 16 43 43 H 1.07997 * 126.12620 * 359.97438 * 21 20 19 44 44 H 1.07996 * 126.03951 * 180.16081 * 22 21 20 45 45 H 1.08000 * 125.90406 * 179.75708 * 23 22 21 46 46 H 1.08998 * 113.61714 * 25.42547 * 25 14 13 47 47 H 1.08993 * 113.61817 * 156.24870 * 25 14 13 48 48 H 0.96692 * 114.00484 * 270.02524 * 27 26 10 49 49 H 1.08002 * 119.87224 * 179.97438 * 28 26 10 50 50 H 1.08007 * 119.87843 * 179.70138 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.7570 -2.0168 1.5093 6 6 2.3869 -2.2625 2.7463 7 6 2.9089 -1.0782 3.1619 8 6 3.6602 -0.8536 4.4150 9 6 4.1467 0.4150 4.7168 10 6 4.8553 0.6210 5.9001 11 6 5.3752 1.9627 6.2278 12 8 5.9931 2.1398 7.2599 13 7 5.1651 2.9917 5.3831 14 6 5.6817 4.3234 5.7082 15 1 5.8374 4.4677 6.7774 16 6 6.8833 4.7453 4.8463 17 6 5.8651 5.3251 3.8503 18 1 5.5309 4.6081 3.1004 19 6 6.2934 6.6635 3.2452 20 7 7.1096 6.4215 2.0530 21 6 6.8747 6.9104 0.8173 22 6 7.8562 6.4598 0.0020 23 6 8.7152 5.6606 0.7634 24 7 8.2686 5.6369 1.9931 25 6 4.9008 5.4672 5.0397 26 6 5.0720 -0.4511 6.7773 27 8 5.7610 -0.2563 7.9294 28 6 4.5821 -1.7122 6.4661 29 6 3.8875 -1.9170 5.2942 30 8 2.6277 -0.1464 2.2312 31 1 -0.3933 0.4418 -0.7650 32 1 1.7923 -0.5139 -0.8900 33 1 1.5616 2.4678 1.2085 34 1 3.5347 1.7701 -0.0322 35 1 1.2366 -2.7399 0.8987 36 1 2.4423 -3.2084 3.2645 37 1 3.9768 1.2365 4.0367 38 1 4.6718 2.8504 4.5599 39 1 7.5136 5.5007 5.3157 40 1 7.4525 3.9048 4.4493 41 1 5.4085 7.2372 2.9694 42 1 6.8759 7.2232 3.9769 43 1 6.0521 7.5489 0.5310 44 1 7.9561 6.6755 -1.0515 45 1 9.5952 5.1513 0.3994 46 1 3.8695 5.2094 4.7989 47 1 4.9879 6.4194 5.5628 48 1 6.7149 -0.3897 7.8446 49 1 4.7505 -2.5368 7.1430 50 1 3.5132 -2.9017 5.0557 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688104_13259648.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:34:59 Heat of formation + Delta-G solvation = 57.609792 kcal Electronic energy + Delta-G solvation = -36448.295090 eV Core-core repulsion = 31605.490140 eV Total energy + Delta-G solvation = -4842.804950 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 396.156 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.75664 -42.10323 -41.64860 -40.55198 -38.97400 -38.10078 -37.80629 -35.09450 -34.29673 -33.66083 -32.83799 -32.19177 -30.93571 -30.17448 -28.60568 -26.82991 -26.40563 -25.61267 -24.28938 -23.48794 -22.96535 -21.94975 -21.88260 -21.62152 -21.21412 -20.39858 -19.60734 -19.03117 -18.78167 -18.24450 -17.82409 -17.27205 -17.08558 -16.67403 -16.61583 -16.52601 -16.18119 -15.99963 -15.85690 -15.59094 -15.43337 -15.08483 -14.93570 -14.63504 -14.56675 -14.44282 -14.34804 -14.14146 -13.94778 -13.81819 -13.66725 -13.52119 -13.48701 -13.24153 -13.15060 -12.91672 -12.74312 -12.31580 -12.16130 -11.87944 -11.70804 -11.56374 -11.33414 -11.10059 -10.81245 -10.66477 -10.44495 -10.35370 -10.30576 -10.05689 -9.48363 -8.94884 -5.20480 -0.60428 -0.27112 0.70893 1.01075 1.03744 1.37556 1.53755 1.57353 1.57961 1.89811 1.90381 1.97550 1.99396 2.58717 3.04276 3.12507 3.19638 3.32508 3.37696 3.50500 3.53497 3.57724 3.69086 3.74102 3.91781 3.92637 3.94195 3.94899 4.05195 4.07077 4.18516 4.23553 4.30581 4.32857 4.53675 4.53983 4.56791 4.60947 4.69540 4.71638 4.73627 4.78799 4.86217 4.92269 4.96141 5.01933 5.05639 5.07745 5.11242 5.13999 5.36527 5.40435 5.51279 5.77111 5.95106 6.09828 6.38614 6.38700 6.64095 6.82762 7.17046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.034 4.034 3 Si 0.704 3.296 4 C -0.009 4.009 5 C -0.163 4.163 6 C -0.186 4.186 7 C 0.034 3.966 8 C -0.034 4.034 9 C -0.055 4.055 10 C -0.164 4.164 11 C 0.564 3.436 12 O -0.513 6.513 13 N -0.712 5.712 14 C 0.120 3.880 15 H 0.109 0.891 16 C -0.132 4.132 17 C -0.123 4.123 18 H 0.092 0.908 19 C 0.142 3.858 20 N -0.372 5.372 21 C 0.049 3.951 22 C -0.274 4.274 23 C 0.041 3.959 24 N -0.289 5.289 25 C -0.139 4.139 26 C 0.181 3.819 27 O -0.475 6.475 28 C -0.147 4.147 29 C -0.052 4.052 30 O -0.173 6.173 31 H 0.390 0.610 32 H 0.095 0.905 33 H -0.249 1.249 34 H -0.252 1.252 35 H 0.157 0.843 36 H 0.157 0.843 37 H 0.130 0.870 38 H 0.398 0.602 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.172 0.828 44 H 0.147 0.853 45 H 0.182 0.818 46 H 0.078 0.922 47 H 0.103 0.897 48 H 0.400 0.600 49 H 0.148 0.852 50 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.914 0.929 -7.132 7.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.144 4.144 3 Si 0.603 3.397 4 C -0.058 4.058 5 C -0.183 4.183 6 C -0.205 4.205 7 C -0.016 4.016 8 C -0.034 4.034 9 C -0.074 4.074 10 C -0.167 4.167 11 C 0.351 3.649 12 O -0.388 6.388 13 N -0.364 5.364 14 C 0.014 3.986 15 H 0.127 0.873 16 C -0.171 4.171 17 C -0.142 4.142 18 H 0.110 0.890 19 C 0.021 3.979 20 N -0.154 5.154 21 C -0.097 4.097 22 C -0.304 4.304 23 C -0.145 4.145 24 N -0.111 5.111 25 C -0.177 4.177 26 C 0.134 3.866 27 O -0.286 6.286 28 C -0.166 4.166 29 C -0.070 4.070 30 O -0.071 6.071 31 H 0.239 0.761 32 H 0.113 0.887 33 H -0.173 1.173 34 H -0.176 1.176 35 H 0.174 0.826 36 H 0.175 0.825 37 H 0.148 0.852 38 H 0.233 0.767 39 H 0.113 0.887 40 H 0.094 0.906 41 H 0.116 0.884 42 H 0.107 0.893 43 H 0.190 0.810 44 H 0.165 0.835 45 H 0.199 0.801 46 H 0.096 0.904 47 H 0.121 0.879 48 H 0.259 0.741 49 H 0.165 0.835 50 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.240 1.374 -3.818 4.635 hybrid contribution -0.076 -0.586 -1.549 1.658 sum -2.316 0.787 -5.368 5.899 Atomic orbital electron populations 1.86472 1.16350 1.81984 1.50213 1.23774 0.86160 1.11565 0.92905 0.95262 0.81014 0.76460 0.86954 1.21363 1.00739 0.92673 0.91075 1.21543 1.03188 0.95604 0.97920 1.21863 1.02668 0.98363 0.97575 1.20303 1.03326 0.87495 0.90446 1.17583 1.00186 0.94153 0.91475 1.21254 0.94593 0.96544 0.94986 1.20264 1.05348 0.94803 0.96321 1.17953 0.79718 0.83791 0.83418 1.90836 1.39706 1.83946 1.24343 1.45593 1.57881 1.08622 1.24333 1.21848 0.94769 0.81157 1.00795 0.87307 1.23397 0.96208 1.01533 0.95960 1.22906 0.98087 0.96613 0.96602 0.88968 1.21787 0.93589 0.97535 0.84984 1.48747 1.20786 1.38149 1.07760 1.22610 1.01091 1.00603 0.85353 1.21553 0.99035 1.08273 1.01515 1.23949 1.00374 0.99257 0.90940 1.77405 0.98416 1.14562 1.20708 1.23366 0.98777 0.99443 0.96130 1.18583 0.93044 0.90539 0.84398 1.84744 1.23931 1.92172 1.27787 1.21404 1.00850 0.96811 0.97496 1.21128 0.95314 0.98413 0.92131 1.83932 1.58374 1.38225 1.26614 0.76068 0.88689 1.17295 1.17641 0.82551 0.82504 0.85196 0.76703 0.88746 0.90579 0.88400 0.89336 0.81046 0.83544 0.80150 0.90382 0.87900 0.74082 0.83475 0.84075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.39 12.86 -35.23 -0.45 -0.06 16 2 C -0.03 0.02 2.97 36.01 0.11 0.13 16 3 Si 0.70 -0.99 32.11 -169.99 -5.46 -6.45 16 4 C -0.01 -0.02 6.24 -35.56 -0.22 -0.25 16 5 C -0.16 -0.31 10.78 -39.80 -0.43 -0.74 16 6 C -0.19 -0.28 10.26 -39.37 -0.40 -0.68 16 7 C 0.03 0.09 7.03 -36.49 -0.26 -0.17 16 8 C -0.03 -0.06 5.87 -105.03 -0.62 -0.67 16 9 C -0.05 -0.10 9.20 -38.78 -0.36 -0.45 16 10 C -0.16 -0.44 5.88 -104.90 -0.62 -1.05 16 11 C 0.56 2.16 7.76 -12.46 -0.10 2.06 16 12 O -0.51 -3.53 14.74 -16.67 -0.25 -3.77 16 13 N -0.71 -0.90 5.21 -54.05 -0.28 -1.18 16 14 C 0.12 0.05 4.32 -67.13 -0.29 -0.24 16 15 H 0.11 0.21 7.46 -51.92 -0.39 -0.18 16 16 C -0.13 -0.06 7.43 -25.93 -0.19 -0.25 16 17 C -0.12 0.14 3.70 -89.81 -0.33 -0.19 16 18 H 0.09 0.00 8.14 -51.93 -0.42 -0.42 16 19 C 0.14 -0.22 6.35 -4.04 -0.03 -0.24 16 20 N -0.37 -0.48 3.68 -61.37 -0.23 -0.71 16 21 C 0.05 0.01 11.45 -17.22 -0.20 -0.19 16 22 C -0.27 -0.26 10.80 -40.01 -0.43 -0.69 16 23 C 0.04 0.09 12.03 -17.36 -0.21 -0.12 16 24 N -0.29 -1.04 12.42 30.63 0.38 -0.66 16 25 C -0.14 0.30 7.39 -25.92 -0.19 0.11 16 26 C 0.18 0.41 6.72 -38.62 -0.26 0.15 16 27 O -0.47 -1.32 11.55 -40.59 -0.47 -1.79 16 28 C -0.15 -0.02 9.96 -39.54 -0.39 -0.42 16 29 C -0.05 0.00 9.54 -39.15 -0.37 -0.37 16 30 O -0.17 -0.63 8.80 4.57 0.04 -0.59 16 31 H 0.39 -2.43 8.74 45.56 0.40 -2.03 16 32 H 0.10 -0.29 7.96 -51.93 -0.41 -0.71 16 33 H -0.25 -0.52 7.11 56.52 0.40 -0.11 16 34 H -0.25 -0.39 7.11 56.52 0.40 0.01 16 35 H 0.16 0.02 8.06 -52.48 -0.42 -0.40 16 36 H 0.16 -0.18 7.25 -52.49 -0.38 -0.56 16 37 H 0.13 0.08 6.24 -52.49 -0.33 -0.25 16 38 H 0.40 -0.12 6.73 -40.82 -0.27 -0.40 16 39 H 0.09 0.02 7.90 -51.93 -0.41 -0.39 16 40 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.10 -0.38 8.07 -51.93 -0.42 -0.80 16 42 H 0.09 -0.16 7.84 -51.93 -0.41 -0.57 16 43 H 0.17 -0.54 8.06 -52.49 -0.42 -0.97 16 44 H 0.15 -0.13 8.06 -52.49 -0.42 -0.56 16 45 H 0.18 -0.06 8.06 -52.49 -0.42 -0.48 16 46 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 47 H 0.10 -0.36 8.10 -51.93 -0.42 -0.78 16 48 H 0.40 -0.39 9.06 45.56 0.41 0.02 16 49 H 0.15 -0.28 8.06 -52.49 -0.42 -0.70 16 50 H 0.14 -0.35 6.96 -52.48 -0.37 -0.72 16 LS Contribution 428.27 15.07 6.45 6.45 Total: 0.00 -13.24 428.27 -11.62 -24.86 By element: Atomic # 1 Polarization: -6.24 SS G_CDS: -5.57 Total: -11.82 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -5.79 Total: -4.28 kcal Atomic # 7 Polarization: -2.42 SS G_CDS: -0.13 Total: -2.55 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -1.13 Total: -6.22 kcal Atomic # 14 Polarization: -0.99 SS G_CDS: -5.46 Total: -6.45 kcal Total LS contribution 6.45 Total: 6.45 kcal Total: -13.24 -11.62 -24.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_13259648.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.470 kcal (2) G-P(sol) polarization free energy of solvation -13.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds