Wall clock time and date at job start Sun Mar 7 2021 04:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86294 * 109.47558 * 2 1 4 4 C 1.50703 * 109.47188 * 120.00606 * 2 1 3 5 5 C 1.34704 * 125.66977 * 64.99184 * 4 2 1 6 6 C 1.40969 * 107.02909 * 179.75002 * 5 4 2 7 7 C 1.35933 * 106.74259 * 0.37397 * 6 5 4 8 8 C 1.47819 * 125.93003 * 179.88640 * 7 6 5 9 9 C 1.39177 * 119.99878 * 179.71751 * 8 7 6 10 10 C 1.39461 * 119.75302 * 180.02562 * 9 8 7 11 11 C 1.47567 * 120.11530 * 179.97438 * 10 9 8 12 12 O 1.21588 * 119.99563 * 180.02562 * 11 10 9 13 13 N 1.34774 * 120.00548 * 0.02562 * 11 10 9 14 14 C 1.46496 * 120.00483 * 180.02562 * 13 11 10 15 15 H 1.09009 * 112.84772 * 336.19364 * 14 13 11 16 16 C 1.53773 * 113.61608 * 107.50190 * 14 13 11 17 17 C 1.53774 * 87.08133 * 89.12028 * 16 14 13 18 18 H 1.09001 * 113.61604 * 270.88217 * 17 16 14 19 19 C 1.53003 * 113.61615 * 139.98422 * 17 16 14 20 20 N 1.46498 * 109.47325 * 87.50222 * 19 17 16 21 21 C 1.34945 * 126.03927 * 124.71807 * 20 19 17 22 22 C 1.35321 * 107.74632 * 179.83830 * 21 20 19 23 23 C 1.39865 * 107.92086 * 0.42111 * 22 21 20 24 24 N 1.30848 * 108.20084 * 359.74241 * 23 22 21 25 25 C 1.53777 * 113.61760 * 205.00374 * 14 13 11 26 26 C 1.40211 * 119.76319 * 359.97438 * 10 9 8 27 27 O 1.35647 * 120.00282 * 179.97438 * 26 10 9 28 28 C 1.38822 * 119.99018 * 0.02562 * 26 10 9 29 29 C 1.37764 * 120.24499 * 0.27477 * 28 26 10 30 30 O 1.34341 * 125.66026 * 244.97507 * 4 2 1 31 31 H 0.96701 * 114.00124 * 59.99610 * 1 2 3 32 32 H 1.09007 * 109.46691 * 239.99569 * 2 1 3 33 33 H 1.48498 * 109.99971 * 59.99858 * 3 2 1 34 34 H 1.48498 * 110.00281 * 181.32206 * 3 2 1 35 35 H 1.08007 * 126.48234 * 359.97438 * 5 4 2 36 36 H 1.08001 * 126.62681 * 180.26467 * 6 5 4 37 37 H 1.07999 * 120.12198 * 359.97438 * 9 8 7 38 38 H 0.97003 * 119.99246 * 0.02562 * 13 11 10 39 39 H 1.09006 * 113.61498 * 203.66373 * 16 14 13 40 40 H 1.09001 * 113.61904 * 334.56785 * 16 14 13 41 41 H 1.09006 * 109.46798 * 207.49781 * 19 17 16 42 42 H 1.08994 * 109.46836 * 327.49806 * 19 17 16 43 43 H 1.07997 * 126.12620 * 359.97438 * 21 20 19 44 44 H 1.07996 * 126.03951 * 180.16081 * 22 21 20 45 45 H 1.08000 * 125.90406 * 179.75708 * 23 22 21 46 46 H 1.08998 * 113.61714 * 25.42547 * 25 14 13 47 47 H 1.08993 * 113.61817 * 156.24870 * 25 14 13 48 48 H 0.96692 * 114.00484 * 270.02524 * 27 26 10 49 49 H 1.08002 * 119.87224 * 179.97438 * 28 26 10 50 50 H 1.08007 * 119.87843 * 179.70138 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.7570 -2.0168 1.5093 6 6 2.3869 -2.2625 2.7463 7 6 2.9089 -1.0782 3.1619 8 6 3.6602 -0.8536 4.4150 9 6 4.1467 0.4150 4.7168 10 6 4.8553 0.6210 5.9001 11 6 5.3752 1.9627 6.2278 12 8 5.9931 2.1398 7.2599 13 7 5.1651 2.9917 5.3831 14 6 5.6817 4.3234 5.7082 15 1 5.8374 4.4677 6.7774 16 6 6.8833 4.7453 4.8463 17 6 5.8651 5.3251 3.8503 18 1 5.5309 4.6081 3.1004 19 6 6.2934 6.6635 3.2452 20 7 7.1096 6.4215 2.0530 21 6 6.8747 6.9104 0.8173 22 6 7.8562 6.4598 0.0020 23 6 8.7152 5.6606 0.7634 24 7 8.2686 5.6369 1.9931 25 6 4.9008 5.4672 5.0397 26 6 5.0720 -0.4511 6.7773 27 8 5.7610 -0.2563 7.9294 28 6 4.5821 -1.7122 6.4661 29 6 3.8875 -1.9170 5.2942 30 8 2.6277 -0.1464 2.2312 31 1 -0.3933 0.4418 -0.7650 32 1 1.7923 -0.5139 -0.8900 33 1 1.5616 2.4678 1.2085 34 1 3.5347 1.7701 -0.0322 35 1 1.2366 -2.7399 0.8987 36 1 2.4423 -3.2084 3.2645 37 1 3.9768 1.2365 4.0367 38 1 4.6718 2.8504 4.5599 39 1 7.5136 5.5007 5.3157 40 1 7.4525 3.9048 4.4493 41 1 5.4085 7.2372 2.9694 42 1 6.8759 7.2232 3.9769 43 1 6.0521 7.5489 0.5310 44 1 7.9561 6.6755 -1.0515 45 1 9.5952 5.1513 0.3994 46 1 3.8695 5.2094 4.7989 47 1 4.9879 6.4194 5.5628 48 1 6.7149 -0.3897 7.8446 49 1 4.7505 -2.5368 7.1430 50 1 3.5132 -2.9017 5.0557 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_13259648.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:34:57 Heat of formation + Delta-G solvation = 55.067056 kcal Electronic energy + Delta-G solvation = -36448.405352 eV Core-core repulsion = 31605.490140 eV Total energy + Delta-G solvation = -4842.915212 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 396.156 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -43.85774 -42.14961 -41.79140 -40.61345 -39.16677 -38.12069 -37.80184 -35.24645 -34.39296 -33.74251 -32.90539 -32.26935 -30.97472 -30.21232 -28.61998 -26.82653 -26.43055 -25.71231 -24.33159 -23.55073 -23.08222 -22.01681 -21.93485 -21.67668 -21.32558 -20.47523 -19.70872 -19.14518 -18.68561 -18.25241 -17.94514 -17.37163 -17.18233 -16.79897 -16.67760 -16.56500 -16.23903 -16.11787 -15.85826 -15.67606 -15.53820 -15.15009 -14.92833 -14.68731 -14.61660 -14.43936 -14.41343 -14.22123 -14.00092 -13.82926 -13.67636 -13.56879 -13.48374 -13.30708 -13.22980 -12.90369 -12.72069 -12.30641 -12.24745 -12.02731 -11.77706 -11.62864 -11.33887 -11.20447 -11.07606 -10.69168 -10.47766 -10.41148 -10.37663 -10.19965 -9.51706 -9.04258 -5.13685 -0.70048 -0.37722 0.62029 0.98329 1.11943 1.31923 1.48366 1.59356 1.63534 1.71573 1.83542 1.93147 1.94098 2.47298 2.97394 3.09493 3.24043 3.31118 3.34218 3.47751 3.57682 3.67038 3.69666 3.71569 3.89107 3.92178 3.94729 4.04823 4.05597 4.13154 4.21632 4.29498 4.34617 4.37635 4.49717 4.51629 4.56677 4.64314 4.66761 4.70679 4.74735 4.77046 4.86567 4.88508 4.91139 4.94475 4.99935 5.02275 5.07172 5.13568 5.33294 5.38257 5.41570 5.72727 5.85198 6.16135 6.20842 6.61618 6.76572 6.81106 6.93382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.039 4.039 3 Si 0.799 3.201 4 C -0.034 4.034 5 C -0.173 4.173 6 C -0.183 4.183 7 C 0.012 3.988 8 C -0.044 4.044 9 C -0.059 4.059 10 C -0.180 4.180 11 C 0.559 3.441 12 O -0.553 6.553 13 N -0.703 5.703 14 C 0.109 3.891 15 H 0.092 0.908 16 C -0.131 4.131 17 C -0.112 4.112 18 H 0.079 0.921 19 C 0.136 3.864 20 N -0.377 5.377 21 C 0.052 3.948 22 C -0.291 4.291 23 C 0.025 3.975 24 N -0.333 5.333 25 C -0.118 4.118 26 C 0.167 3.833 27 O -0.492 6.492 28 C -0.141 4.141 29 C -0.041 4.041 30 O -0.195 6.195 31 H 0.413 0.587 32 H 0.125 0.875 33 H -0.300 1.300 34 H -0.296 1.296 35 H 0.173 0.827 36 H 0.184 0.816 37 H 0.131 0.869 38 H 0.405 0.595 39 H 0.097 0.903 40 H 0.047 0.953 41 H 0.131 0.869 42 H 0.093 0.907 43 H 0.208 0.792 44 H 0.162 0.838 45 H 0.193 0.807 46 H 0.086 0.914 47 H 0.125 0.875 48 H 0.411 0.589 49 H 0.172 0.828 50 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.696 0.630 -8.553 9.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.148 4.148 3 Si 0.705 3.295 4 C -0.083 4.083 5 C -0.192 4.192 6 C -0.202 4.202 7 C -0.037 4.037 8 C -0.044 4.044 9 C -0.078 4.078 10 C -0.184 4.184 11 C 0.347 3.653 12 O -0.431 6.431 13 N -0.355 5.355 14 C 0.004 3.996 15 H 0.110 0.890 16 C -0.170 4.170 17 C -0.131 4.131 18 H 0.097 0.903 19 C 0.016 3.984 20 N -0.160 5.160 21 C -0.094 4.094 22 C -0.320 4.320 23 C -0.160 4.160 24 N -0.155 5.155 25 C -0.157 4.157 26 C 0.121 3.879 27 O -0.305 6.305 28 C -0.159 4.159 29 C -0.059 4.059 30 O -0.094 6.094 31 H 0.266 0.734 32 H 0.142 0.858 33 H -0.228 1.228 34 H -0.224 1.224 35 H 0.191 0.809 36 H 0.201 0.799 37 H 0.149 0.851 38 H 0.241 0.759 39 H 0.115 0.885 40 H 0.066 0.934 41 H 0.149 0.851 42 H 0.111 0.889 43 H 0.224 0.776 44 H 0.180 0.820 45 H 0.209 0.791 46 H 0.105 0.895 47 H 0.143 0.857 48 H 0.272 0.728 49 H 0.189 0.811 50 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -4.049 1.075 -5.302 6.757 hybrid contribution 0.488 -0.493 -1.110 1.309 sum -3.561 0.582 -6.411 7.357 Atomic orbital electron populations 1.86417 1.16091 1.82564 1.52073 1.23958 0.86499 1.11708 0.92650 0.94385 0.76911 0.74251 0.83972 1.22114 1.00785 0.93638 0.91722 1.21873 1.03273 0.95759 0.98339 1.22241 1.01563 0.98904 0.97444 1.20594 1.04293 0.87979 0.90814 1.17767 1.00357 0.94517 0.91765 1.21269 0.94701 0.97109 0.94703 1.20262 1.06471 0.94477 0.97188 1.18253 0.79226 0.84671 0.83138 1.90799 1.41725 1.84634 1.25988 1.45583 1.57158 1.08642 1.24111 1.21972 0.95898 0.81679 1.00068 0.88957 1.23351 0.96236 1.00745 0.96682 1.22751 0.97400 0.96720 0.96253 0.90263 1.22038 0.94525 0.97264 0.84538 1.48982 1.20365 1.37757 1.08882 1.23224 1.01508 1.00036 0.84661 1.21864 0.99235 1.08457 1.02464 1.24324 1.01106 0.99616 0.91002 1.77339 1.00109 1.16331 1.21729 1.23315 0.98530 0.98988 0.94821 1.18862 0.93455 0.91339 0.84272 1.84697 1.25067 1.92437 1.28330 1.21635 0.99951 0.96462 0.97840 1.21458 0.94104 0.99140 0.91234 1.83925 1.58986 1.39175 1.27306 0.73370 0.85796 1.22809 1.22396 0.80937 0.79902 0.85104 0.75861 0.88502 0.93439 0.85115 0.88923 0.77559 0.82049 0.79059 0.89538 0.85698 0.72761 0.81081 0.81115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.43 12.86 -148.98 -1.92 -0.48 16 2 C -0.04 0.08 2.97 71.24 0.21 0.29 16 3 Si 0.80 -1.84 32.11 68.60 2.20 0.36 16 4 C -0.03 -0.17 6.24 24.88 0.16 -0.02 16 5 C -0.17 -0.55 10.78 22.13 0.24 -0.31 16 6 C -0.18 -0.41 10.26 22.40 0.23 -0.18 16 7 C 0.01 0.07 7.03 24.27 0.17 0.24 16 8 C -0.04 -0.17 5.87 -20.13 -0.12 -0.29 16 9 C -0.06 -0.32 9.20 22.79 0.21 -0.11 16 10 C -0.18 -1.36 5.88 -20.04 -0.12 -1.48 16 11 C 0.56 5.91 7.76 86.71 0.67 6.58 16 12 O -0.55 -9.42 14.74 17.00 0.25 -9.17 16 13 N -0.70 -3.59 5.21 -443.19 -2.31 -5.90 16 14 C 0.11 0.32 4.32 45.51 0.20 0.52 16 15 H 0.09 0.60 7.46 -2.38 -0.02 0.58 16 16 C -0.13 -0.42 7.43 31.12 0.23 -0.18 16 17 C -0.11 0.17 3.70 -10.27 -0.04 0.13 16 18 H 0.08 0.11 8.14 -2.39 -0.02 0.09 16 19 C 0.14 -0.48 6.35 86.38 0.55 0.06 16 20 N -0.38 -1.06 3.68 -348.06 -1.28 -2.34 16 21 C 0.05 -0.02 11.45 83.54 0.96 0.94 16 22 C -0.29 -0.60 10.80 21.99 0.24 -0.36 16 23 C 0.02 0.14 12.03 85.23 1.02 1.16 16 24 N -0.33 -2.93 12.42 -57.02 -0.71 -3.64 16 25 C -0.12 0.50 7.39 31.12 0.23 0.73 16 26 C 0.17 0.99 6.72 22.89 0.15 1.14 16 27 O -0.49 -3.63 11.55 -68.62 -0.79 -4.42 16 28 C -0.14 -0.01 9.96 22.30 0.22 0.22 16 29 C -0.04 0.04 9.54 22.55 0.22 0.25 16 30 O -0.19 -1.65 8.80 -6.55 -0.06 -1.71 16 31 H 0.41 -5.83 8.74 -74.06 -0.65 -6.48 16 32 H 0.12 -0.99 7.96 -2.38 -0.02 -1.00 16 33 H -0.30 -1.82 7.11 99.48 0.71 -1.11 16 34 H -0.30 -1.43 7.11 99.48 0.71 -0.72 16 35 H 0.17 -0.18 8.06 -2.91 -0.02 -0.21 16 36 H 0.18 -0.80 7.25 -2.91 -0.02 -0.82 16 37 H 0.13 0.51 6.24 -2.91 -0.02 0.49 16 38 H 0.40 0.75 6.73 -92.71 -0.62 0.13 16 39 H 0.10 0.23 7.90 -2.38 -0.02 0.21 16 40 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.13 -1.32 8.07 -2.38 -0.02 -1.34 16 42 H 0.09 -0.38 7.84 -2.39 -0.02 -0.40 16 43 H 0.21 -1.78 8.06 -2.91 -0.02 -1.80 16 44 H 0.16 -0.34 8.06 -2.91 -0.02 -0.36 16 45 H 0.19 0.21 8.06 -2.91 -0.02 0.19 16 46 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 47 H 0.12 -1.03 8.10 -2.39 -0.02 -1.05 16 48 H 0.41 0.08 9.06 -74.06 -0.67 -0.59 16 49 H 0.17 -0.88 8.06 -2.91 -0.02 -0.90 16 50 H 0.17 -1.25 6.96 -2.91 -0.02 -1.27 16 Total: 0.00 -34.53 428.27 0.14 -34.39 By element: Atomic # 1 Polarization: -15.54 SS G_CDS: -0.88 Total: -16.42 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 5.63 Total: 9.34 kcal Atomic # 7 Polarization: -7.58 SS G_CDS: -4.30 Total: -11.88 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -2.51 Total: -15.79 kcal Atomic # 14 Polarization: -1.84 SS G_CDS: 2.20 Total: 0.36 kcal Total: -34.53 0.14 -34.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_13259648.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.456 kcal (2) G-P(sol) polarization free energy of solvation -34.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds