Wall clock time and date at job start Sun Mar 7 2021 04:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86298 * 109.46811 * 2 1 4 4 C 1.50697 * 109.46890 * 240.00296 * 2 1 3 5 5 C 1.34195 * 126.54128 * 104.99600 * 4 2 1 6 6 N 1.36864 * 109.96549 * 179.97438 * 5 4 2 7 7 C 1.37402 * 109.98093 * 0.02562 * 6 5 4 8 8 C 1.39334 * 133.24704 * 180.02562 * 7 6 5 9 9 C 1.36353 * 120.23605 * 179.79305 * 8 7 6 10 10 C 1.40174 * 120.66481 * 0.44393 * 9 8 7 11 11 C 1.47652 * 119.97151 * 179.79757 * 10 9 8 12 12 O 1.21580 * 119.99855 * 179.72231 * 11 10 9 13 13 N 1.34775 * 120.00117 * 359.72245 * 11 10 9 14 14 C 1.46497 * 120.00126 * 180.02562 * 13 11 10 15 15 H 1.09002 * 112.84935 * 25.32833 * 14 13 11 16 16 C 1.53786 * 113.61643 * 156.52505 * 14 13 11 17 17 C 1.53782 * 87.07909 * 89.19525 * 16 14 13 18 18 H 1.08997 * 113.61784 * 270.88529 * 17 16 14 19 19 C 1.53002 * 113.61144 * 140.06321 * 17 16 14 20 20 N 1.46501 * 109.47210 * 175.00337 * 19 17 16 21 21 C 1.34948 * 126.04051 * 124.71776 * 20 19 17 22 22 C 1.35309 * 107.74857 * 179.83990 * 21 20 19 23 23 C 1.39871 * 107.92239 * 0.42284 * 22 21 20 24 24 N 1.30841 * 108.19918 * 359.73537 * 23 22 21 25 25 C 1.53781 * 113.61305 * 254.13352 * 14 13 11 26 26 C 1.39190 * 120.05387 * 359.51685 * 10 9 8 27 27 C 1.39229 * 119.39260 * 0.25393 * 26 10 9 28 28 H 0.96702 * 114.00116 * 59.99722 * 1 2 3 29 29 H 1.09001 * 109.46917 * 119.99959 * 2 1 3 30 30 H 1.48499 * 109.99987 * 60.00417 * 3 2 1 31 31 H 1.48503 * 110.00000 * 181.32092 * 3 2 1 32 32 H 1.07993 * 125.01540 * 0.02845 * 5 4 2 33 33 H 0.96997 * 125.00562 * 179.97438 * 6 5 4 34 34 H 1.08000 * 119.88103 * 359.97285 * 8 7 6 35 35 H 1.07991 * 119.66921 * 180.23670 * 9 8 7 36 36 H 0.97006 * 119.99816 * 359.97438 * 13 11 10 37 37 H 1.08993 * 113.61491 * 203.74894 * 16 14 13 38 38 H 1.09000 * 113.61395 * 334.56747 * 16 14 13 39 39 H 1.09000 * 109.47179 * 295.00397 * 19 17 16 40 40 H 1.09004 * 109.47260 * 55.00380 * 19 17 16 41 41 H 1.07999 * 126.12280 * 359.97438 * 21 20 19 42 42 H 1.07998 * 126.04165 * 180.16002 * 22 21 20 43 43 H 1.07993 * 125.90381 * 179.76212 * 23 22 21 44 44 H 1.09001 * 113.61695 * 25.34675 * 25 14 13 45 45 H 1.08997 * 113.61223 * 156.25258 * 25 14 13 46 46 H 1.08005 * 120.30071 * 180.23910 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.4607 -0.1385 -2.3231 6 7 2.8031 -1.1004 -3.2345 7 6 2.4956 -2.3454 -2.7413 8 6 2.6351 -3.6350 -3.2501 9 6 2.2347 -4.7106 -2.5139 10 6 1.6702 -4.5367 -1.2427 11 6 1.2378 -5.7121 -0.4606 12 8 0.7528 -5.5621 0.6441 13 7 1.3809 -6.9511 -0.9712 14 6 0.9514 -8.1172 -0.1954 15 1 0.1711 -7.8804 0.5279 16 6 0.6370 -9.3501 -1.0593 17 6 2.1189 -9.7336 -0.9119 18 1 2.7590 -9.3082 -1.6849 19 6 2.3467 -11.2330 -0.7104 20 7 3.7850 -11.5114 -0.7005 21 6 4.4645 -12.1446 0.2786 22 6 5.7641 -12.2042 -0.0933 23 6 5.8847 -11.5778 -1.3381 24 7 4.6990 -11.1622 -1.7031 25 6 2.1172 -8.9253 0.3985 26 6 1.5223 -3.2574 -0.7148 27 6 1.9346 -2.1577 -1.4625 28 1 -0.3933 0.4417 -0.7650 29 1 1.7924 -0.5138 0.8900 30 1 1.5615 2.4678 1.2085 31 1 3.5346 1.7704 -0.0322 32 1 2.5971 0.9237 -2.4621 33 1 3.2033 -0.9284 -4.1012 34 1 3.0646 -3.7833 -4.2298 35 1 2.3507 -5.7063 -2.9156 36 1 1.7676 -7.0707 -1.8528 37 1 -0.0457 -10.0540 -0.5834 38 1 0.3476 -9.1049 -2.0812 39 1 1.9102 -11.5425 0.2392 40 1 1.8755 -11.7847 -1.5239 41 1 4.0455 -12.5357 1.1939 42 1 6.5672 -12.6522 0.4730 43 1 6.7986 -11.4582 -1.9009 44 1 3.0226 -8.3379 0.5513 45 1 1.8399 -9.5130 1.2736 46 1 1.0913 -3.1190 0.2659 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688104_13287722.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:35:04 Heat of formation + Delta-G solvation = 106.920647 kcal Electronic energy + Delta-G solvation = -29714.464573 eV Core-core repulsion = 25573.962515 eV Total energy + Delta-G solvation = -4140.502058 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.49747 -42.04846 -41.17701 -39.52424 -37.86905 -37.35424 -35.02443 -33.46526 -33.23663 -31.01756 -30.78875 -30.43915 -28.49818 -26.84002 -26.48016 -25.23874 -23.86548 -23.49382 -22.02814 -21.66350 -21.57518 -20.78591 -20.16785 -19.33755 -18.54501 -18.11711 -17.46392 -17.34600 -16.96820 -16.48187 -16.22368 -16.09136 -15.70129 -15.61541 -15.47975 -15.22801 -15.07833 -14.76806 -14.73279 -14.56200 -14.27950 -14.04268 -13.92152 -13.80971 -13.61203 -13.59340 -13.50054 -12.88073 -12.54913 -12.29637 -12.27675 -12.18429 -11.87676 -11.67825 -11.53075 -11.37687 -10.84694 -10.79080 -10.32063 -10.26487 -10.03984 -9.43595 -9.33152 -8.83500 -5.08426 -0.05592 0.18246 1.04027 1.30668 1.46919 1.60999 1.65165 1.96659 1.98489 2.00128 2.02012 2.12754 2.95781 3.30588 3.40358 3.44389 3.57202 3.57658 3.71804 3.73958 3.80416 3.84104 3.92869 3.97974 4.07232 4.09652 4.32545 4.36210 4.39295 4.41558 4.49453 4.56586 4.57074 4.59484 4.68940 4.75597 4.81238 4.91061 4.94900 4.98044 5.01871 5.11677 5.17580 5.24771 5.37099 5.48647 5.59400 5.60553 5.79728 5.97450 6.13272 6.35253 6.54355 6.69553 6.84433 7.31752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.034 4.034 3 Si 0.688 3.312 4 C -0.192 4.192 5 C 0.061 3.939 6 N -0.585 5.585 7 C 0.119 3.881 8 C -0.133 4.133 9 C -0.066 4.066 10 C -0.169 4.169 11 C 0.568 3.432 12 O -0.536 6.536 13 N -0.712 5.712 14 C 0.124 3.876 15 H 0.107 0.893 16 C -0.137 4.137 17 C -0.123 4.123 18 H 0.104 0.896 19 C 0.142 3.858 20 N -0.370 5.370 21 C 0.053 3.947 22 C -0.276 4.276 23 C 0.043 3.957 24 N -0.297 5.297 25 C -0.147 4.147 26 C 0.008 3.992 27 C -0.103 4.103 28 H 0.377 0.623 29 H 0.112 0.888 30 H -0.254 1.254 31 H -0.256 1.256 32 H 0.179 0.821 33 H 0.421 0.579 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.400 0.600 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.172 0.828 42 H 0.146 0.854 43 H 0.182 0.818 44 H 0.072 0.928 45 H 0.092 0.908 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.587 0.877 -5.378 5.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.146 4.146 3 Si 0.589 3.411 4 C -0.199 4.199 5 C -0.065 4.065 6 N -0.187 5.187 7 C 0.010 3.990 8 C -0.154 4.154 9 C -0.086 4.086 10 C -0.173 4.173 11 C 0.357 3.643 12 O -0.413 6.413 13 N -0.364 5.364 14 C 0.018 3.982 15 H 0.125 0.875 16 C -0.176 4.176 17 C -0.142 4.142 18 H 0.122 0.878 19 C 0.021 3.979 20 N -0.152 5.152 21 C -0.094 4.094 22 C -0.305 4.305 23 C -0.143 4.143 24 N -0.118 5.118 25 C -0.185 4.185 26 C -0.011 4.011 27 C -0.108 4.108 28 H 0.223 0.777 29 H 0.130 0.870 30 H -0.178 1.178 31 H -0.181 1.181 32 H 0.196 0.804 33 H 0.259 0.741 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.236 0.764 37 H 0.119 0.881 38 H 0.098 0.902 39 H 0.116 0.884 40 H 0.105 0.895 41 H 0.189 0.811 42 H 0.164 0.836 43 H 0.199 0.801 44 H 0.091 0.909 45 H 0.110 0.890 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.020 1.952 -4.596 4.993 hybrid contribution 1.157 -1.169 -0.096 1.648 sum 1.177 0.782 -4.692 4.900 Atomic orbital electron populations 1.86539 1.17263 1.81724 1.48911 1.24414 0.84907 1.09020 0.96239 0.95336 0.80642 0.77162 0.87976 1.20762 1.09274 0.91952 0.97937 1.21682 1.01038 0.94289 0.89482 1.41736 1.54647 1.04135 1.18213 1.18431 0.99804 0.86518 0.94205 1.19668 1.05756 0.88839 1.01138 1.20582 0.96673 0.98352 0.93002 1.19516 1.08295 0.93199 0.96336 1.18180 0.77696 0.82778 0.85677 1.90797 1.44299 1.86012 1.20183 1.45553 1.64655 1.05184 1.20978 1.21749 0.97498 0.84415 0.94517 0.87525 1.23342 0.95743 0.97082 1.01413 1.23006 0.97740 0.93763 0.99731 0.87763 1.21795 0.75572 0.96682 1.03825 1.48718 1.07735 1.44178 1.14557 1.22592 0.93213 0.98544 0.95010 1.21548 0.96706 1.12579 0.99679 1.23911 0.96351 0.97814 0.96195 1.77309 0.99110 1.23370 1.12038 1.23552 0.99707 0.98456 0.96817 1.20697 0.92413 0.89201 0.98833 1.18923 1.04549 0.92977 0.94343 0.77651 0.87025 1.17839 1.18091 0.80431 0.74092 0.85402 0.85477 0.76397 0.88135 0.90154 0.88396 0.89505 0.81072 0.83584 0.80124 0.90902 0.88966 0.84385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.69 12.88 -35.23 -0.45 -1.14 16 2 C -0.03 -0.02 3.06 36.00 0.11 0.09 16 3 Si 0.69 -0.97 30.76 -169.99 -5.23 -6.20 16 4 C -0.19 -0.13 5.58 -102.69 -0.57 -0.71 16 5 C 0.06 -0.12 10.43 -16.73 -0.17 -0.29 16 6 N -0.59 1.11 6.05 -10.61 -0.06 1.04 16 7 C 0.12 0.10 7.27 -83.95 -0.61 -0.51 16 8 C -0.13 0.03 10.00 -39.85 -0.40 -0.37 16 9 C -0.07 -0.02 9.46 -39.53 -0.37 -0.39 16 10 C -0.17 -0.48 5.87 -104.97 -0.62 -1.09 16 11 C 0.57 2.21 7.76 -12.42 -0.10 2.11 16 12 O -0.54 -4.11 15.95 5.30 0.08 -4.02 16 13 N -0.71 -0.47 5.21 -54.02 -0.28 -0.75 16 14 C 0.12 0.00 4.30 -67.12 -0.29 -0.29 16 15 H 0.11 0.17 7.50 -51.93 -0.39 -0.22 16 16 C -0.14 0.35 7.38 -25.92 -0.19 0.16 16 17 C -0.12 0.18 3.75 -89.71 -0.34 -0.15 16 18 H 0.10 0.01 7.96 -51.93 -0.41 -0.41 16 19 C 0.14 -0.23 6.35 -4.04 -0.03 -0.25 16 20 N -0.37 -0.49 3.68 -61.36 -0.23 -0.72 16 21 C 0.05 0.03 11.45 -17.23 -0.20 -0.17 16 22 C -0.28 -0.34 10.80 -40.01 -0.43 -0.78 16 23 C 0.04 0.09 12.03 -17.36 -0.21 -0.12 16 24 N -0.30 -1.02 12.27 30.62 0.38 -0.65 16 25 C -0.15 0.06 7.45 -25.82 -0.19 -0.13 16 26 C 0.01 0.03 9.64 -38.86 -0.37 -0.34 16 27 C -0.10 -0.27 6.34 -105.16 -0.67 -0.94 16 28 H 0.38 -1.12 8.70 45.56 0.40 -0.72 16 29 H 0.11 0.20 7.96 -51.93 -0.41 -0.22 16 30 H -0.25 -0.56 7.11 56.52 0.40 -0.16 16 31 H -0.26 -0.25 7.11 56.52 0.40 0.15 16 32 H 0.18 -1.00 6.35 -52.49 -0.33 -1.34 16 33 H 0.42 -2.09 8.96 -40.82 -0.37 -2.46 16 34 H 0.13 -0.34 8.06 -52.49 -0.42 -0.76 16 35 H 0.13 -0.32 6.36 -52.49 -0.33 -0.65 16 36 H 0.40 -0.64 6.71 -40.82 -0.27 -0.91 16 37 H 0.10 -0.39 8.10 -51.93 -0.42 -0.81 16 38 H 0.08 -0.22 8.14 -51.93 -0.42 -0.65 16 39 H 0.10 -0.37 7.79 -51.93 -0.40 -0.77 16 40 H 0.09 -0.17 8.14 -51.93 -0.42 -0.60 16 41 H 0.17 -0.45 8.06 -52.49 -0.42 -0.87 16 42 H 0.15 -0.07 8.06 -52.49 -0.42 -0.49 16 43 H 0.18 -0.09 8.06 -52.49 -0.42 -0.52 16 44 H 0.07 0.13 8.14 -51.93 -0.42 -0.29 16 45 H 0.09 -0.13 7.91 -51.93 -0.41 -0.54 16 46 H 0.14 0.69 7.64 -52.48 -0.40 0.28 16 LS Contribution 388.54 15.07 5.86 5.86 Total: 0.00 -12.21 388.54 -11.51 -23.71 By element: Atomic # 1 Polarization: -7.03 SS G_CDS: -5.92 Total: -12.95 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -5.65 Total: -4.18 kcal Atomic # 7 Polarization: -0.87 SS G_CDS: -0.20 Total: -1.07 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.37 Total: -5.16 kcal Atomic # 14 Polarization: -0.97 SS G_CDS: -5.23 Total: -6.20 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -12.21 -11.51 -23.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_13287722.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.632 kcal (2) G-P(sol) polarization free energy of solvation -12.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds