Wall clock time and date at job start Sun Mar 7 2021 04:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50707 * 109.46442 * 119.99698 * 2 1 3 5 5 C 1.38554 * 120.31844 * 244.71883 * 4 2 1 6 6 N 1.31529 * 120.89874 * 179.77552 * 5 4 2 7 7 C 1.32718 * 121.64184 * 0.49375 * 6 5 4 8 8 C 1.48167 * 119.72206 * 179.75459 * 7 6 5 9 9 O 1.21518 * 120.00003 * 180.02562 * 8 7 6 10 10 N 1.34780 * 119.99989 * 0.02562 * 8 7 6 11 11 C 1.46503 * 119.99518 * 180.02562 * 10 8 7 12 12 H 1.08994 * 112.85590 * 336.19738 * 11 10 8 13 13 C 1.53779 * 113.61205 * 107.50770 * 11 10 8 14 14 C 1.53781 * 87.08428 * 89.11153 * 13 11 10 15 15 H 1.09004 * 113.61393 * 270.88158 * 14 13 11 16 16 C 1.53000 * 113.69148 * 139.98944 * 14 13 11 17 17 N 1.46501 * 109.46894 * 87.46684 * 16 14 13 18 18 C 1.34949 * 126.03712 * 125.00469 * 17 16 14 19 19 C 1.35319 * 107.74385 * 179.97438 * 18 17 16 20 20 C 1.39864 * 107.92336 * 359.97438 * 19 18 17 21 21 N 1.30839 * 108.19956 * 359.74286 * 20 19 18 22 22 C 1.53781 * 87.08178 * 25.43155 * 14 13 11 23 23 C 1.39309 * 120.55445 * 359.77247 * 7 6 5 24 24 C 1.38587 * 119.06005 * 359.97438 * 23 7 6 25 25 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 26 26 H 1.08999 * 109.47293 * 239.99660 * 2 1 3 27 27 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 28 28 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 29 29 H 1.07999 * 119.55304 * 0.03105 * 5 4 2 30 30 H 0.96996 * 119.99824 * 0.02562 * 10 8 7 31 31 H 1.09001 * 113.61665 * 203.66022 * 13 11 10 32 32 H 1.08998 * 113.61505 * 334.56012 * 13 11 10 33 33 H 1.08999 * 109.47266 * 207.46265 * 16 14 13 34 34 H 1.08994 * 109.47150 * 327.46320 * 16 14 13 35 35 H 1.07997 * 126.12650 * 359.97438 * 18 17 16 36 36 H 1.08004 * 126.03874 * 179.97438 * 19 18 17 37 37 H 1.07995 * 125.90299 * 180.02562 * 20 19 18 38 38 H 1.09001 * 113.61443 * 220.02630 * 22 14 13 39 39 H 1.09001 * 113.61410 * 89.11578 * 22 14 13 40 40 H 1.08001 * 120.46826 * 180.02562 * 23 7 6 41 41 H 1.08002 * 120.76094 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 2.6459 -0.0184 2.1950 6 7 3.0857 -0.6260 3.2754 7 6 2.8738 -1.9198 3.4817 8 6 3.3933 -2.5624 4.7116 9 8 3.2026 -3.7468 4.9053 10 7 4.0773 -1.8333 5.6155 11 6 4.5914 -2.4688 6.8312 12 1 4.0413 -3.3696 7.1031 13 6 6.1181 -2.6535 6.8314 14 6 6.2085 -1.2534 7.4610 15 1 6.2682 -0.4483 6.7286 16 6 7.2702 -1.1395 8.5568 17 7 8.5604 -0.7973 7.9531 18 6 9.3377 0.2550 8.2842 19 6 10.4390 0.2175 7.4988 20 6 10.3314 -0.8962 6.6595 21 7 9.2084 -1.5085 6.9349 22 6 4.7885 -1.4907 8.0015 23 6 2.1674 -2.6789 2.5514 24 6 1.6876 -2.0638 1.4059 25 1 -0.3934 0.4418 0.7650 26 1 1.7924 -0.5139 -0.8899 27 1 1.5616 2.4678 -1.2086 28 1 1.5878 2.4586 1.2241 29 1 2.8409 1.0352 2.0598 30 1 4.2292 -0.8878 5.4610 31 1 6.4614 -3.4514 7.4899 32 1 6.5509 -2.7119 5.8328 33 1 6.9816 -0.3609 9.2629 34 1 7.3553 -2.0916 9.0806 35 1 9.1198 0.9946 9.0404 36 1 11.2567 0.9228 7.5169 37 1 11.0529 -1.2008 5.9159 38 1 4.1479 -0.6104 7.9473 39 1 4.7682 -1.9707 8.9799 40 1 1.9954 -3.7315 2.7208 41 1 1.1362 -2.6259 0.6667 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688104_13287726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:35:08 Heat of formation + Delta-G solvation = 86.522155 kcal Electronic energy + Delta-G solvation = -25025.930412 eV Core-core repulsion = 21296.533709 eV Total energy + Delta-G solvation = -3729.396703 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.09113 -41.86505 -40.86925 -39.31229 -38.06815 -35.12927 -34.03203 -33.22281 -32.90780 -30.90994 -28.81521 -27.70963 -26.78758 -25.12709 -24.63123 -23.62710 -22.07449 -21.88844 -21.56705 -20.32220 -19.32355 -18.76908 -18.15237 -17.79900 -16.93646 -16.73975 -16.54910 -16.45261 -16.08638 -16.07757 -15.71577 -15.29809 -15.00324 -14.79366 -14.54942 -14.44808 -14.44536 -14.21836 -13.72956 -13.57726 -13.53007 -13.45126 -12.89572 -12.73426 -12.28035 -12.16280 -11.69171 -11.52874 -11.32322 -11.29303 -11.12244 -10.80517 -10.66545 -10.37865 -10.26416 -10.03760 -9.44299 -5.12160 -0.60107 0.02979 1.05217 1.06533 1.42252 1.59815 1.62750 1.81420 1.94773 2.03429 2.66409 2.90671 3.15096 3.24189 3.37558 3.39451 3.57086 3.61306 3.67975 3.74543 3.88516 3.95886 3.99041 4.10017 4.11020 4.27723 4.32066 4.35239 4.50820 4.57042 4.64653 4.68398 4.75771 4.83776 4.90870 4.93220 4.97294 5.08347 5.11010 5.18000 5.32571 5.52996 5.81191 6.13948 6.18181 6.30667 6.60410 6.86896 7.12343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.525 6.525 2 C -0.074 4.074 3 Si 0.686 3.314 4 C -0.148 4.148 5 C 0.102 3.898 6 N -0.453 5.453 7 C 0.081 3.919 8 C 0.576 3.424 9 O -0.526 6.526 10 N -0.693 5.693 11 C 0.116 3.884 12 H 0.108 0.892 13 C -0.133 4.133 14 C -0.122 4.122 15 H 0.096 0.904 16 C 0.142 3.858 17 N -0.371 5.371 18 C 0.050 3.950 19 C -0.275 4.275 20 C 0.041 3.959 21 N -0.289 5.289 22 C -0.137 4.137 23 C -0.108 4.108 24 C -0.052 4.052 25 H 0.378 0.622 26 H 0.125 0.875 27 H -0.251 1.251 28 H -0.255 1.255 29 H 0.164 0.836 30 H 0.412 0.588 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.172 0.828 36 H 0.146 0.854 37 H 0.182 0.818 38 H 0.079 0.921 39 H 0.101 0.899 40 H 0.153 0.847 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.035 4.303 1.344 4.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.332 6.332 2 C -0.184 4.184 3 Si 0.586 3.414 4 C -0.151 4.151 5 C -0.058 4.058 6 N -0.164 5.164 7 C -0.057 4.057 8 C 0.361 3.639 9 O -0.401 6.401 10 N -0.344 5.344 11 C 0.010 3.990 12 H 0.126 0.874 13 C -0.171 4.171 14 C -0.141 4.141 15 H 0.114 0.886 16 C 0.021 3.979 17 N -0.154 5.154 18 C -0.096 4.096 19 C -0.304 4.304 20 C -0.145 4.145 21 N -0.110 5.110 22 C -0.176 4.176 23 C -0.128 4.128 24 C -0.078 4.078 25 H 0.226 0.774 26 H 0.143 0.857 27 H -0.175 1.175 28 H -0.180 1.180 29 H 0.181 0.819 30 H 0.248 0.752 31 H 0.112 0.888 32 H 0.095 0.905 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.189 0.811 36 H 0.164 0.836 37 H 0.199 0.801 38 H 0.098 0.902 39 H 0.120 0.880 40 H 0.171 0.829 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.347 3.395 1.404 3.691 hybrid contribution -0.795 0.650 0.028 1.027 sum -0.447 4.046 1.432 4.315 Atomic orbital electron populations 1.86642 1.17174 1.79969 1.49380 1.25017 0.84287 1.11351 0.97754 0.94956 0.91449 0.74003 0.80951 1.21585 0.99511 0.95766 0.98189 1.22669 0.94187 1.00038 0.88874 1.67528 1.18250 1.09455 1.21214 1.21151 0.98495 0.90274 0.95763 1.17839 0.77900 0.85940 0.82259 1.90822 1.57998 1.14730 1.76586 1.45472 1.54903 1.13713 1.20304 1.21909 0.95480 0.97304 0.84267 0.87421 1.23395 0.94970 0.96186 1.02576 1.22906 0.93710 0.99626 0.97822 0.88596 1.21787 0.78583 1.02783 0.94773 1.48746 1.17055 1.20324 1.29283 1.22602 0.92785 0.93097 1.01157 1.21552 1.01910 1.03846 1.03125 1.23942 0.95746 0.94754 1.00068 1.77399 1.08771 1.19371 1.05490 1.23355 0.95509 1.00115 0.98612 1.22231 0.95296 1.02332 0.92959 1.21570 0.95806 0.93717 0.96713 0.77441 0.85701 1.17526 1.17970 0.81904 0.75187 0.88806 0.90482 0.88421 0.89455 0.81091 0.83602 0.80147 0.90210 0.88027 0.82926 0.83423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.20 12.84 -35.23 -0.45 -0.25 16 2 C -0.07 0.14 2.82 36.01 0.10 0.24 16 3 Si 0.69 -1.75 29.90 -169.99 -5.08 -6.83 16 4 C -0.15 0.16 5.37 -104.36 -0.56 -0.40 16 5 C 0.10 -0.07 9.84 -17.56 -0.17 -0.24 16 6 N -0.45 -0.48 9.54 -9.80 -0.09 -0.57 16 7 C 0.08 0.16 6.75 -83.01 -0.56 -0.40 16 8 C 0.58 1.79 7.81 -12.18 -0.10 1.69 16 9 O -0.53 -3.15 15.92 5.35 0.09 -3.07 16 10 N -0.69 -0.53 5.25 -53.85 -0.28 -0.81 16 11 C 0.12 -0.02 4.33 -67.11 -0.29 -0.31 16 12 H 0.11 0.12 7.46 -51.93 -0.39 -0.27 16 13 C -0.13 0.00 7.43 -25.92 -0.19 -0.20 16 14 C -0.12 0.20 3.70 -89.81 -0.33 -0.13 16 15 H 0.10 -0.05 8.14 -51.93 -0.42 -0.48 16 16 C 0.14 -0.26 6.35 -4.04 -0.03 -0.29 16 17 N -0.37 -0.41 3.68 -61.37 -0.23 -0.63 16 18 C 0.05 0.01 11.45 -17.22 -0.20 -0.19 16 19 C -0.27 -0.25 10.80 -40.01 -0.43 -0.69 16 20 C 0.04 0.08 12.03 -17.37 -0.21 -0.13 16 21 N -0.29 -0.98 12.42 30.62 0.38 -0.60 16 22 C -0.14 0.38 7.39 -25.91 -0.19 0.19 16 23 C -0.11 -0.10 9.63 -39.05 -0.38 -0.48 16 24 C -0.05 0.03 9.83 -39.31 -0.39 -0.36 16 25 H 0.38 -1.18 8.70 45.56 0.40 -0.79 16 26 H 0.13 -0.35 7.96 -51.93 -0.41 -0.76 16 27 H -0.25 -0.22 7.11 56.52 0.40 0.18 16 28 H -0.25 0.22 7.02 56.52 0.40 0.61 16 29 H 0.16 -0.46 4.86 -52.49 -0.26 -0.72 16 30 H 0.41 -0.16 8.03 -40.82 -0.33 -0.49 16 31 H 0.09 -0.02 7.90 -51.93 -0.41 -0.43 16 32 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.10 -0.41 8.07 -51.93 -0.42 -0.83 16 34 H 0.09 -0.18 7.85 -51.93 -0.41 -0.59 16 35 H 0.17 -0.54 8.06 -52.49 -0.42 -0.96 16 36 H 0.15 -0.12 8.06 -52.48 -0.42 -0.55 16 37 H 0.18 -0.09 8.06 -52.49 -0.42 -0.51 16 38 H 0.08 -0.24 8.14 -51.93 -0.42 -0.67 16 39 H 0.10 -0.41 8.10 -51.93 -0.42 -0.83 16 40 H 0.15 0.10 7.64 -52.49 -0.40 -0.30 16 41 H 0.15 -0.29 8.06 -52.49 -0.42 -0.71 16 LS Contribution 352.44 15.07 5.31 5.31 Total: 0.00 -8.97 352.44 -9.49 -18.46 By element: Atomic # 1 Polarization: -4.13 SS G_CDS: -5.21 Total: -9.34 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -3.92 Total: -1.67 kcal Atomic # 7 Polarization: -2.39 SS G_CDS: -0.22 Total: -2.61 kcal Atomic # 8 Polarization: -2.95 SS G_CDS: -0.37 Total: -3.32 kcal Atomic # 14 Polarization: -1.75 SS G_CDS: -5.08 Total: -6.83 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -8.97 -9.49 -18.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_13287726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.984 kcal (2) G-P(sol) polarization free energy of solvation -8.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds