Wall clock time and date at job start Sun Mar 7 2021 04:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50707 * 109.46442 * 119.99698 * 2 1 3 5 5 C 1.38554 * 120.31844 * 244.71883 * 4 2 1 6 6 N 1.31529 * 120.89874 * 179.77552 * 5 4 2 7 7 C 1.32718 * 121.64184 * 0.49375 * 6 5 4 8 8 C 1.48167 * 119.72206 * 179.75459 * 7 6 5 9 9 O 1.21518 * 120.00003 * 180.02562 * 8 7 6 10 10 N 1.34780 * 119.99989 * 0.02562 * 8 7 6 11 11 C 1.46503 * 119.99518 * 180.02562 * 10 8 7 12 12 H 1.08994 * 112.85590 * 336.19738 * 11 10 8 13 13 C 1.53779 * 113.61205 * 107.50770 * 11 10 8 14 14 C 1.53781 * 87.08428 * 89.11153 * 13 11 10 15 15 H 1.09004 * 113.61393 * 270.88158 * 14 13 11 16 16 C 1.53000 * 113.69148 * 139.98944 * 14 13 11 17 17 N 1.46501 * 109.46894 * 87.46684 * 16 14 13 18 18 C 1.34949 * 126.03712 * 125.00469 * 17 16 14 19 19 C 1.35319 * 107.74385 * 179.97438 * 18 17 16 20 20 C 1.39864 * 107.92336 * 359.97438 * 19 18 17 21 21 N 1.30839 * 108.19956 * 359.74286 * 20 19 18 22 22 C 1.53781 * 87.08178 * 25.43155 * 14 13 11 23 23 C 1.39309 * 120.55445 * 359.77247 * 7 6 5 24 24 C 1.38587 * 119.06005 * 359.97438 * 23 7 6 25 25 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 26 26 H 1.08999 * 109.47293 * 239.99660 * 2 1 3 27 27 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 28 28 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 29 29 H 1.07999 * 119.55304 * 0.03105 * 5 4 2 30 30 H 0.96996 * 119.99824 * 0.02562 * 10 8 7 31 31 H 1.09001 * 113.61665 * 203.66022 * 13 11 10 32 32 H 1.08998 * 113.61505 * 334.56012 * 13 11 10 33 33 H 1.08999 * 109.47266 * 207.46265 * 16 14 13 34 34 H 1.08994 * 109.47150 * 327.46320 * 16 14 13 35 35 H 1.07997 * 126.12650 * 359.97438 * 18 17 16 36 36 H 1.08004 * 126.03874 * 179.97438 * 19 18 17 37 37 H 1.07995 * 125.90299 * 180.02562 * 20 19 18 38 38 H 1.09001 * 113.61443 * 220.02630 * 22 14 13 39 39 H 1.09001 * 113.61410 * 89.11578 * 22 14 13 40 40 H 1.08001 * 120.46826 * 180.02562 * 23 7 6 41 41 H 1.08002 * 120.76094 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 2.6459 -0.0184 2.1950 6 7 3.0857 -0.6260 3.2754 7 6 2.8738 -1.9198 3.4817 8 6 3.3933 -2.5624 4.7116 9 8 3.2026 -3.7468 4.9053 10 7 4.0773 -1.8333 5.6155 11 6 4.5914 -2.4688 6.8312 12 1 4.0413 -3.3696 7.1031 13 6 6.1181 -2.6535 6.8314 14 6 6.2085 -1.2534 7.4610 15 1 6.2682 -0.4483 6.7286 16 6 7.2702 -1.1395 8.5568 17 7 8.5604 -0.7973 7.9531 18 6 9.3377 0.2550 8.2842 19 6 10.4390 0.2175 7.4988 20 6 10.3314 -0.8962 6.6595 21 7 9.2084 -1.5085 6.9349 22 6 4.7885 -1.4907 8.0015 23 6 2.1674 -2.6789 2.5514 24 6 1.6876 -2.0638 1.4059 25 1 -0.3934 0.4418 0.7650 26 1 1.7924 -0.5139 -0.8899 27 1 1.5616 2.4678 -1.2086 28 1 1.5878 2.4586 1.2241 29 1 2.8409 1.0352 2.0598 30 1 4.2292 -0.8878 5.4610 31 1 6.4614 -3.4514 7.4899 32 1 6.5509 -2.7119 5.8328 33 1 6.9816 -0.3609 9.2629 34 1 7.3553 -2.0916 9.0806 35 1 9.1198 0.9946 9.0404 36 1 11.2567 0.9228 7.5169 37 1 11.0529 -1.2008 5.9159 38 1 4.1479 -0.6104 7.9473 39 1 4.7682 -1.9707 8.9799 40 1 1.9954 -3.7315 2.7208 41 1 1.1362 -2.6259 0.6667 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_13287726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:35:07 Heat of formation + Delta-G solvation = 85.708079 kcal Electronic energy + Delta-G solvation = -25025.965713 eV Core-core repulsion = 21296.533709 eV Total energy + Delta-G solvation = -3729.432004 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.11493 -41.89823 -40.89187 -39.40911 -38.01898 -35.20790 -34.01960 -33.26982 -32.91156 -30.92554 -28.79873 -27.67704 -26.71558 -25.11687 -24.61285 -23.61669 -22.14293 -21.88094 -21.58180 -20.32967 -19.38650 -18.72132 -18.11146 -17.80660 -16.97743 -16.68840 -16.55624 -16.44790 -16.12496 -16.08046 -15.71798 -15.32852 -14.98541 -14.79206 -14.54767 -14.47356 -14.39960 -14.21803 -13.67642 -13.54701 -13.50965 -13.39427 -12.82387 -12.65660 -12.23272 -12.13934 -11.69208 -11.57058 -11.48484 -11.24366 -11.11569 -10.71312 -10.70518 -10.43915 -10.30678 -10.11383 -9.45445 -4.93650 -0.64793 0.04181 1.04718 1.22425 1.47190 1.57221 1.70875 1.87095 1.94833 1.98961 2.60731 2.88601 3.31604 3.35046 3.45441 3.46900 3.60852 3.68395 3.73706 3.78950 3.88866 4.03384 4.08787 4.11604 4.24029 4.37714 4.44679 4.46676 4.57171 4.63810 4.73906 4.78207 4.81167 4.87378 4.94492 4.95549 5.01298 5.04729 5.12589 5.19250 5.34242 5.49949 5.78914 6.20969 6.22916 6.40663 6.56179 6.83012 6.97685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.078 4.078 3 Si 0.764 3.236 4 C -0.138 4.138 5 C 0.099 3.901 6 N -0.461 5.461 7 C 0.063 3.937 8 C 0.570 3.430 9 O -0.566 6.566 10 N -0.683 5.683 11 C 0.106 3.894 12 H 0.092 0.908 13 C -0.134 4.134 14 C -0.110 4.110 15 H 0.086 0.914 16 C 0.135 3.865 17 N -0.376 5.376 18 C 0.052 3.948 19 C -0.293 4.293 20 C 0.025 3.975 21 N -0.331 5.331 22 C -0.116 4.116 23 C -0.116 4.116 24 C -0.052 4.052 25 H 0.388 0.612 26 H 0.137 0.863 27 H -0.298 1.298 28 H -0.273 1.273 29 H 0.186 0.814 30 H 0.418 0.582 31 H 0.094 0.906 32 H 0.047 0.953 33 H 0.131 0.869 34 H 0.090 0.910 35 H 0.206 0.794 36 H 0.160 0.840 37 H 0.193 0.807 38 H 0.091 0.909 39 H 0.122 0.878 40 H 0.149 0.851 41 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.882 5.908 2.137 6.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.187 4.187 3 Si 0.668 3.332 4 C -0.141 4.141 5 C -0.060 4.060 6 N -0.172 5.172 7 C -0.074 4.074 8 C 0.356 3.644 9 O -0.444 6.444 10 N -0.333 5.333 11 C 0.000 4.000 12 H 0.111 0.889 13 C -0.173 4.173 14 C -0.129 4.129 15 H 0.104 0.896 16 C 0.015 3.985 17 N -0.158 5.158 18 C -0.094 4.094 19 C -0.322 4.322 20 C -0.160 4.160 21 N -0.153 5.153 22 C -0.154 4.154 23 C -0.137 4.137 24 C -0.077 4.077 25 H 0.238 0.762 26 H 0.155 0.845 27 H -0.226 1.226 28 H -0.199 1.199 29 H 0.202 0.798 30 H 0.256 0.744 31 H 0.113 0.887 32 H 0.066 0.934 33 H 0.149 0.851 34 H 0.108 0.892 35 H 0.223 0.777 36 H 0.177 0.823 37 H 0.209 0.791 38 H 0.109 0.891 39 H 0.140 0.860 40 H 0.166 0.834 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.211 5.003 2.223 5.478 hybrid contribution -0.769 0.197 -0.278 0.842 sum -0.559 5.200 1.944 5.580 Atomic orbital electron populations 1.86619 1.17886 1.80367 1.50250 1.25211 0.83766 1.12031 0.97715 0.94052 0.90172 0.71699 0.77286 1.21689 0.98685 0.95482 0.98222 1.23056 0.93706 1.00937 0.88335 1.67509 1.18657 1.08994 1.22061 1.21056 0.99669 0.90923 0.95775 1.18127 0.77803 0.85637 0.82865 1.90787 1.59798 1.16281 1.77560 1.45466 1.53846 1.13846 1.20130 1.22035 0.94927 0.97909 0.85093 0.88938 1.23363 0.94905 0.97795 1.01204 1.22753 0.94726 0.97737 0.97664 0.89604 1.22054 0.77324 1.04237 0.94852 1.48991 1.17748 1.20310 1.28795 1.23193 0.92090 0.92992 1.01127 1.21853 1.02980 1.04002 1.03392 1.24307 0.95800 0.95277 1.00646 1.77335 1.09786 1.20975 1.07224 1.23295 0.94388 0.99601 0.98112 1.22289 0.95585 1.02293 0.93493 1.21758 0.95477 0.94139 0.96343 0.76217 0.84547 1.22565 1.19902 0.79794 0.74438 0.88733 0.93404 0.85146 0.89183 0.77693 0.82280 0.79066 0.89070 0.85989 0.83352 0.81951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.84 12.84 -148.98 -1.91 -1.07 16 2 C -0.08 0.38 2.82 71.24 0.20 0.58 16 3 Si 0.76 -4.46 29.90 68.60 2.05 -2.41 16 4 C -0.14 0.39 5.37 -19.69 -0.11 0.28 16 5 C 0.10 -0.19 9.84 84.81 0.83 0.65 16 6 N -0.46 -1.13 9.54 -184.91 -1.76 -2.89 16 7 C 0.06 0.33 6.75 41.91 0.28 0.62 16 8 C 0.57 4.73 7.81 86.88 0.68 5.41 16 9 O -0.57 -8.37 15.92 -3.77 -0.06 -8.43 16 10 N -0.68 -2.03 5.25 -442.58 -2.32 -4.35 16 11 C 0.11 0.09 4.33 45.52 0.20 0.29 16 12 H 0.09 0.38 7.46 -2.39 -0.02 0.36 16 13 C -0.13 -0.22 7.43 31.12 0.23 0.01 16 14 C -0.11 0.38 3.70 -10.27 -0.04 0.34 16 15 H 0.09 -0.08 8.14 -2.38 -0.02 -0.10 16 16 C 0.14 -0.65 6.35 86.38 0.55 -0.10 16 17 N -0.38 -0.70 3.68 -348.07 -1.28 -1.98 16 18 C 0.05 -0.05 11.45 83.54 0.96 0.91 16 19 C -0.29 -0.50 10.80 21.99 0.24 -0.26 16 20 C 0.02 0.12 12.03 85.23 1.02 1.15 16 21 N -0.33 -2.61 12.42 -57.03 -0.71 -3.32 16 22 C -0.12 0.75 7.39 31.12 0.23 0.98 16 23 C -0.12 -0.36 9.63 22.61 0.22 -0.14 16 24 C -0.05 0.06 9.83 22.45 0.22 0.28 16 25 H 0.39 -2.70 8.70 -74.06 -0.64 -3.35 16 26 H 0.14 -0.95 7.96 -2.39 -0.02 -0.97 16 27 H -0.30 -0.69 7.11 99.48 0.71 0.02 16 28 H -0.27 0.76 7.02 99.48 0.70 1.46 16 29 H 0.19 -1.28 4.86 -2.91 -0.01 -1.30 16 30 H 0.42 0.03 8.03 -92.71 -0.74 -0.72 16 31 H 0.09 0.11 7.90 -2.39 -0.02 0.09 16 32 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.13 -1.48 8.07 -2.39 -0.02 -1.49 16 34 H 0.09 -0.46 7.85 -2.39 -0.02 -0.48 16 35 H 0.21 -1.84 8.06 -2.91 -0.02 -1.86 16 36 H 0.16 -0.34 8.06 -2.91 -0.02 -0.36 16 37 H 0.19 0.09 8.06 -2.91 -0.02 0.06 16 38 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 16 39 H 0.12 -1.23 8.10 -2.39 -0.02 -1.25 16 40 H 0.15 0.50 7.64 -2.91 -0.02 0.48 16 41 H 0.16 -0.72 8.06 -2.91 -0.02 -0.74 16 Total: 0.00 -23.44 352.44 -0.57 -24.00 By element: Atomic # 1 Polarization: -10.25 SS G_CDS: -0.28 Total: -10.54 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 5.72 Total: 10.99 kcal Atomic # 7 Polarization: -6.47 SS G_CDS: -6.08 Total: -12.54 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: -1.97 Total: -9.50 kcal Atomic # 14 Polarization: -4.46 SS G_CDS: 2.05 Total: -2.41 kcal Total: -23.44 -0.57 -24.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_13287726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.713 kcal (2) G-P(sol) polarization free energy of solvation -23.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds