Wall clock time and date at job start Sun Mar 7 2021 04:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34661 * 124.85208 * 2 1 4 4 C 1.36774 * 108.39297 * 180.13534 * 3 2 1 5 5 C 1.47264 * 126.93515 * 179.87355 * 4 3 2 6 6 O 1.21630 * 119.99829 * 179.68684 * 5 4 3 7 7 N 1.34776 * 120.00416 * 359.68413 * 5 4 3 8 8 C 1.46496 * 120.00015 * 180.02562 * 7 5 4 9 9 H 1.09004 * 112.90889 * 336.25053 * 8 7 5 10 10 C 1.53784 * 113.61524 * 107.50411 * 8 7 5 11 11 C 1.53779 * 87.08045 * 89.11591 * 10 8 7 12 12 H 1.09001 * 113.69124 * 270.87427 * 11 10 8 13 13 C 1.52998 * 113.61561 * 139.98260 * 11 10 8 14 14 N 1.46496 * 109.47269 * 87.50029 * 13 11 10 15 15 C 1.34948 * 126.04000 * 124.71718 * 14 13 11 16 16 C 1.35315 * 107.75038 * 179.84068 * 15 14 13 17 17 C 1.39870 * 107.91933 * 0.42395 * 16 15 14 18 18 N 1.30838 * 108.19953 * 359.73745 * 17 16 15 19 19 C 1.53779 * 87.08402 * 25.43458 * 11 10 8 20 20 C 1.46685 * 106.11933 * 359.61162 * 4 3 2 21 21 C 1.34487 * 106.33236 * 0.23940 * 20 4 3 22 22 C 1.50695 * 125.57214 * 179.97438 * 21 20 4 23 23 O 1.42904 * 109.47193 * 210.02097 * 22 21 20 24 24 Si 1.86302 * 109.47315 * 330.02499 * 22 21 20 25 25 H 1.08995 * 109.47432 * 270.30829 * 1 2 3 26 26 H 1.08999 * 109.47162 * 30.30859 * 1 2 3 27 27 H 1.09002 * 109.47387 * 150.30641 * 1 2 3 28 28 H 1.08000 * 125.80213 * 0.02853 * 3 2 1 29 29 H 0.96998 * 119.99607 * 0.02562 * 7 5 4 30 30 H 1.09002 * 113.61478 * 203.66556 * 10 8 7 31 31 H 1.09004 * 113.61162 * 334.56734 * 10 8 7 32 32 H 1.09007 * 109.47269 * 207.50282 * 13 11 10 33 33 H 1.08998 * 109.47235 * 327.49891 * 13 11 10 34 34 H 1.08008 * 126.12646 * 359.97438 * 15 14 13 35 35 H 1.07998 * 126.04506 * 180.15949 * 16 15 14 36 36 H 1.07999 * 125.90266 * 179.71649 * 17 16 15 37 37 H 1.08997 * 113.61646 * 220.02209 * 19 11 10 38 38 H 1.09000 * 113.61527 * 89.11480 * 19 11 10 39 39 H 1.07999 * 126.83134 * 180.25603 * 20 4 3 40 40 H 1.09003 * 109.47293 * 90.02326 * 22 21 20 41 41 H 0.96705 * 113.99797 * 60.00308 * 23 22 21 42 42 H 1.48501 * 109.99580 * 58.67899 * 24 22 21 43 43 H 1.48500 * 110.00095 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2345 1.1051 0.0000 4 6 3.5462 0.7175 -0.0031 5 6 4.7283 1.5957 -0.0068 6 8 5.8446 1.1127 -0.0035 7 7 4.5734 2.9345 -0.0138 8 6 5.7494 3.8080 -0.0181 9 1 6.6379 3.3253 0.3891 10 6 5.9917 4.5085 -1.3655 11 6 5.0869 5.6402 -0.8504 12 1 4.0304 5.4925 -1.0743 13 6 5.5831 7.0389 -1.2222 14 7 5.0583 7.4094 -2.5388 15 6 4.3431 8.5173 -2.8254 16 6 4.0535 8.4910 -4.1469 17 6 4.6024 7.3222 -4.6845 18 7 5.2049 6.6731 -3.7215 19 6 5.4824 5.2036 0.5700 20 6 3.5375 -0.7493 0.0045 21 6 2.2447 -1.1198 0.0060 22 6 1.7397 -2.5396 0.0127 23 8 0.4811 -2.6007 -0.6614 24 14 2.9653 -3.6388 -0.8594 25 1 -0.3634 0.0055 1.0276 26 1 -0.3633 0.8872 -0.5186 27 1 -0.3634 -0.8927 -0.5091 28 1 1.8767 2.1241 0.0004 29 1 3.6831 3.3196 -0.0161 30 1 7.0269 4.8129 -1.5195 31 1 5.5762 3.9709 -2.2180 32 1 5.2375 7.7567 -0.4781 33 1 6.6727 7.0421 -1.2513 34 1 4.0555 9.2882 -2.1258 35 1 3.4935 9.2380 -4.6898 36 1 4.5394 7.0093 -5.7163 37 1 4.6559 5.2272 1.2802 38 1 6.3784 5.6981 0.9452 39 1 4.3981 -1.4018 0.0084 40 1 1.6174 -2.8770 1.0419 41 1 0.5150 -2.3142 -1.5844 42 1 4.2869 -3.5595 -0.1869 43 1 2.4792 -5.0420 -0.8592 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_13287730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:35:11 Heat of formation + Delta-G solvation = 99.372492 kcal Electronic energy + Delta-G solvation = -25812.542874 eV Core-core repulsion = 22056.391925 eV Total energy + Delta-G solvation = -3756.150949 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.51805 -42.01571 -40.98347 -39.21257 -37.81788 -35.03196 -33.85691 -33.35873 -31.38603 -30.88840 -28.63246 -27.48209 -26.68134 -26.34452 -24.52787 -23.48354 -21.87780 -21.58658 -21.12270 -20.75860 -20.20739 -19.03558 -18.11905 -17.35878 -17.20635 -16.83956 -16.71702 -16.28442 -16.00207 -15.70635 -15.49635 -15.44302 -15.15505 -14.87059 -14.81472 -14.66426 -14.33580 -14.09638 -13.67951 -13.56105 -13.44565 -13.37331 -13.28079 -13.03186 -12.78144 -12.19813 -12.14787 -12.10450 -11.63198 -11.54474 -11.20357 -11.08972 -10.72022 -10.30423 -10.12484 -9.60846 -9.44939 -9.26045 -5.01084 0.68409 0.99559 1.05342 1.35403 1.61062 1.71404 1.86578 1.99378 2.01956 2.21644 2.48358 3.27031 3.37450 3.49694 3.51655 3.71411 3.81551 3.85772 3.92039 4.05685 4.12200 4.24986 4.30319 4.37606 4.38793 4.39811 4.49054 4.50826 4.69580 4.76027 4.78294 4.81942 4.86495 4.92503 4.95434 4.97866 5.05667 5.08114 5.19810 5.19942 5.55375 5.63600 5.79445 5.92267 6.20405 6.23402 6.56133 6.59083 6.83817 7.29218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.420 5.420 3 C 0.076 3.924 4 C -0.261 4.261 5 C 0.588 3.412 6 O -0.597 6.597 7 N -0.697 5.697 8 C 0.110 3.890 9 H 0.080 0.920 10 C -0.136 4.136 11 C -0.106 4.106 12 H 0.092 0.908 13 C 0.134 3.866 14 N -0.375 5.375 15 C 0.053 3.947 16 C -0.293 4.293 17 C 0.025 3.975 18 N -0.331 5.331 19 C -0.116 4.116 20 C -0.168 4.168 21 C -0.013 4.013 22 C -0.033 4.033 23 O -0.543 6.543 24 Si 0.784 3.216 25 H 0.075 0.925 26 H 0.107 0.893 27 H 0.119 0.881 28 H 0.208 0.792 29 H 0.412 0.588 30 H 0.087 0.913 31 H 0.048 0.952 32 H 0.131 0.869 33 H 0.086 0.914 34 H 0.206 0.794 35 H 0.159 0.841 36 H 0.192 0.808 37 H 0.095 0.905 38 H 0.115 0.885 39 H 0.131 0.869 40 H 0.116 0.884 41 H 0.398 0.602 42 H -0.300 1.300 43 H -0.282 1.282 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.135 6.517 0.412 10.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.094 5.094 3 C -0.062 4.062 4 C -0.271 4.271 5 C 0.379 3.621 6 O -0.479 6.479 7 N -0.348 5.348 8 C 0.004 3.996 9 H 0.098 0.902 10 C -0.175 4.175 11 C -0.125 4.125 12 H 0.110 0.890 13 C 0.014 3.986 14 N -0.158 5.158 15 C -0.094 4.094 16 C -0.322 4.322 17 C -0.160 4.160 18 N -0.153 5.153 19 C -0.154 4.154 20 C -0.192 4.192 21 C -0.123 4.123 22 C -0.144 4.144 23 O -0.352 6.352 24 Si 0.689 3.311 25 H 0.094 0.906 26 H 0.125 0.875 27 H 0.137 0.863 28 H 0.224 0.776 29 H 0.249 0.751 30 H 0.105 0.895 31 H 0.067 0.933 32 H 0.149 0.851 33 H 0.105 0.895 34 H 0.223 0.777 35 H 0.177 0.823 36 H 0.209 0.791 37 H 0.113 0.887 38 H 0.134 0.866 39 H 0.149 0.851 40 H 0.134 0.866 41 H 0.249 0.751 42 H -0.227 1.227 43 H -0.209 1.209 Dipole moment (debyes) X Y Z Total from point charges -6.673 4.179 1.505 8.016 hybrid contribution -0.507 0.946 0.147 1.083 sum -7.180 5.125 1.652 8.975 Atomic orbital electron populations 1.22810 0.74119 1.07657 1.04885 1.43732 1.08191 1.04261 1.53189 1.22376 0.88834 0.93304 1.01694 1.20272 0.92341 0.93658 1.20862 1.17739 0.87843 0.82223 0.74311 1.90749 1.27951 1.76202 1.53011 1.45313 1.09851 1.04587 1.75057 1.21882 0.89149 0.90889 0.97698 0.90157 1.23366 1.00425 0.97067 0.96652 1.22738 0.99906 0.92909 0.96909 0.89004 1.22064 0.99851 0.97765 0.78899 1.48993 1.41860 1.16781 1.08170 1.23189 0.95741 0.92142 0.98286 1.21850 1.12880 1.02558 0.94955 1.24310 0.97253 0.94678 0.99801 1.77355 1.25191 1.20796 0.91958 1.23282 1.04188 0.92616 0.95310 1.21725 0.95546 0.93771 1.08197 1.20762 0.89981 0.90075 1.11477 1.24671 0.93674 0.93922 1.02107 1.86427 1.28985 1.89279 1.30469 0.93222 0.73537 0.75384 0.88968 0.90612 0.87486 0.86259 0.77552 0.75128 0.89457 0.93331 0.85077 0.89540 0.77682 0.82306 0.79096 0.88679 0.86632 0.85103 0.86644 0.75128 1.22706 1.20911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.40 10.71 127.77 1.37 0.97 16 2 N -0.42 1.06 3.09 -533.25 -1.65 -0.58 16 3 C 0.08 -0.16 10.83 83.92 0.91 0.75 16 4 C -0.26 -1.66 6.29 -19.04 -0.12 -1.77 16 5 C 0.59 6.07 7.81 86.62 0.68 6.74 16 6 O -0.60 -12.20 16.57 -4.13 -0.07 -12.27 16 7 N -0.70 -1.27 5.25 -443.44 -2.33 -3.60 16 8 C 0.11 0.17 4.32 45.52 0.20 0.37 16 9 H 0.08 0.56 7.46 -2.39 -0.02 0.54 16 10 C -0.14 -0.28 7.43 31.12 0.23 -0.05 16 11 C -0.11 0.47 3.70 -10.27 -0.04 0.43 16 12 H 0.09 -0.33 8.14 -2.39 -0.02 -0.35 16 13 C 0.13 -0.70 6.35 86.38 0.55 -0.15 16 14 N -0.38 -0.45 3.68 -348.06 -1.28 -1.73 16 15 C 0.05 -0.09 11.45 83.54 0.96 0.87 16 16 C -0.29 -0.29 10.80 21.99 0.24 -0.05 16 17 C 0.02 0.11 12.03 85.24 1.03 1.13 16 18 N -0.33 -2.43 12.42 -57.02 -0.71 -3.14 16 19 C -0.12 0.78 7.39 31.12 0.23 1.01 16 20 C -0.17 -1.29 9.49 23.62 0.22 -1.07 16 21 C -0.01 -0.02 6.14 40.98 0.25 0.23 16 22 C -0.03 0.05 2.98 71.23 0.21 0.26 16 23 O -0.54 2.64 9.95 -148.98 -1.48 1.16 16 24 Si 0.78 -0.09 31.29 68.60 2.15 2.05 16 25 H 0.08 -0.65 8.14 -2.39 -0.02 -0.67 16 26 H 0.11 -1.45 8.13 -2.39 -0.02 -1.46 16 27 H 0.12 -1.15 4.94 -2.39 -0.01 -1.16 16 28 H 0.21 -2.23 7.45 -2.91 -0.02 -2.25 16 29 H 0.41 -2.13 7.64 -92.71 -0.71 -2.83 16 30 H 0.09 0.23 7.90 -2.39 -0.02 0.21 16 31 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.13 -1.56 8.07 -2.38 -0.02 -1.58 16 33 H 0.09 -0.41 7.84 -2.39 -0.02 -0.43 16 34 H 0.21 -2.01 8.06 -2.91 -0.02 -2.03 16 35 H 0.16 -0.44 8.06 -2.91 -0.02 -0.46 16 36 H 0.19 -0.01 8.06 -2.91 -0.02 -0.04 16 37 H 0.09 -0.89 8.14 -2.39 -0.02 -0.91 16 38 H 0.12 -1.08 8.10 -2.39 -0.02 -1.10 16 39 H 0.13 1.43 6.67 -2.91 -0.02 1.41 16 40 H 0.12 -0.07 7.96 -2.39 -0.02 -0.08 16 41 H 0.40 -4.85 8.38 -74.05 -0.62 -5.47 16 42 H -0.30 -2.38 6.77 99.48 0.67 -1.71 16 43 H -0.28 -1.40 7.11 99.48 0.71 -0.69 16 Total: 0.00 -30.42 361.15 1.26 -29.16 By element: Atomic # 1 Polarization: -20.44 SS G_CDS: -0.28 Total: -20.72 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 6.91 Total: 9.67 kcal Atomic # 7 Polarization: -3.09 SS G_CDS: -5.96 Total: -9.05 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -1.55 Total: -11.12 kcal Atomic # 14 Polarization: -0.09 SS G_CDS: 2.15 Total: 2.05 kcal Total: -30.42 1.26 -29.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_13287730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.536 kcal (2) G-P(sol) polarization free energy of solvation -30.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds