Wall clock time and date at job start Sun Mar 7 2021 04:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38975 * 119.95415 * 2 1 4 4 O 1.35712 * 119.91419 * 359.73976 * 3 2 1 5 5 C 1.39024 * 120.17373 * 180.02562 * 3 2 1 6 6 C 1.50705 * 119.95305 * 179.97438 * 5 3 2 7 7 O 1.42899 * 109.47141 * 74.99895 * 6 5 3 8 8 Si 1.86303 * 109.46691 * 194.99435 * 6 5 3 9 9 C 1.37678 * 120.08993 * 359.97438 * 5 3 2 10 10 C 1.39751 * 119.90830 * 0.02562 * 9 5 3 11 11 C 1.47604 * 120.08801 * 179.97438 * 10 9 5 12 12 O 1.21584 * 119.99778 * 0.02585 * 11 10 9 13 13 N 1.34778 * 120.00427 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99918 * 180.02562 * 13 11 10 15 15 H 1.08993 * 112.85074 * 336.19472 * 14 13 11 16 16 C 1.53783 * 113.61319 * 107.50261 * 14 13 11 17 17 C 1.53780 * 87.08256 * 89.11279 * 16 14 13 18 18 H 1.09003 * 113.61740 * 270.88226 * 17 16 14 19 19 C 1.52999 * 113.61604 * 139.97852 * 17 16 14 20 20 N 1.46498 * 109.47028 * 87.50392 * 19 17 16 21 21 C 1.34953 * 126.03865 * 125.00171 * 20 19 17 22 22 C 1.35311 * 107.74656 * 179.97438 * 21 20 19 23 23 C 1.39866 * 107.92406 * 0.02562 * 22 21 20 24 24 N 1.30848 * 108.20030 * 359.74188 * 23 22 21 25 25 C 1.53785 * 87.08276 * 25.43095 * 17 16 14 26 26 C 1.37715 * 119.95630 * 180.02562 * 2 1 3 27 27 H 1.08995 * 109.47097 * 89.99901 * 1 2 3 28 28 H 1.09000 * 109.47133 * 210.00353 * 1 2 3 29 29 H 1.09004 * 109.47072 * 329.99933 * 1 2 3 30 30 H 0.96703 * 113.99179 * 90.00847 * 4 3 2 31 31 H 1.08988 * 109.47132 * 314.99645 * 6 5 3 32 32 H 0.96702 * 114.00005 * 59.99470 * 7 6 5 33 33 H 1.48504 * 109.99759 * 58.68877 * 8 6 5 34 34 H 1.48506 * 109.99625 * 179.97438 * 8 6 5 35 35 H 1.07996 * 120.04682 * 179.97438 * 9 5 3 36 36 H 0.96998 * 119.99402 * 359.97438 * 13 11 10 37 37 H 1.08998 * 113.61295 * 203.66228 * 16 14 13 38 38 H 1.08995 * 113.61553 * 334.56816 * 16 14 13 39 39 H 1.09002 * 109.47557 * 207.50222 * 19 17 16 40 40 H 1.08999 * 109.47114 * 327.50673 * 19 17 16 41 41 H 1.08000 * 126.12632 * 359.97438 * 21 20 19 42 42 H 1.08005 * 126.03846 * 179.97438 * 22 21 20 43 43 H 1.08002 * 125.90532 * 179.97438 * 23 22 21 44 44 H 1.08995 * 113.61801 * 220.01899 * 25 17 16 45 45 H 1.09002 * 113.68922 * 89.12668 * 25 17 16 46 46 H 1.08000 * 120.04757 * 359.96043 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.2041 0.0000 4 8 1.5197 2.3778 -0.0053 5 6 3.5911 1.2094 -0.0005 6 6 4.3386 2.5181 -0.0011 7 8 4.2725 3.1049 1.3001 8 14 6.1197 2.2156 -0.4562 9 6 4.2860 0.0209 -0.0005 10 6 3.5918 -1.1921 -0.0005 11 6 4.3327 -2.4687 -0.0011 12 8 5.5486 -2.4659 -0.0011 13 7 3.6616 -3.6375 -0.0016 14 6 4.3970 -4.9045 -0.0016 15 1 5.4044 -4.8091 -0.4066 16 6 4.3393 -5.6502 1.3420 17 6 3.0624 -6.3300 0.8202 18 1 2.1503 -5.7771 1.0449 19 6 2.9648 -7.8128 1.1844 20 7 2.3328 -7.9523 2.4986 21 6 1.2406 -8.6934 2.7798 22 6 0.9784 -8.5572 4.1002 23 6 1.9430 -7.7032 4.6447 24 7 2.7586 -7.3441 3.6866 25 6 3.6020 -6.0782 -0.5977 26 6 2.1947 -1.1932 -0.0005 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.3189 2.7200 0.8766 31 1 3.8876 3.1937 -0.7277 32 1 4.6565 2.5573 1.9985 33 1 6.2005 1.5763 -1.7942 34 1 6.8676 3.4986 -0.4609 35 1 5.3659 0.0258 -0.0014 36 1 2.6916 -3.6396 -0.0013 37 1 5.1697 -6.3396 1.4948 38 1 4.1676 -4.9966 2.1972 39 1 2.3658 -8.3321 0.4363 40 1 3.9645 -8.2462 1.2142 41 1 0.6767 -9.2886 2.0767 42 1 0.1671 -9.0246 4.6385 43 1 2.0063 -7.3964 5.6783 44 1 2.8352 -5.7700 -1.3083 45 1 4.2308 -6.8839 -0.9765 46 1 1.6547 -2.1285 -0.0003 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688104_13287732.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:35:16 Heat of formation + Delta-G solvation = 27.385652 kcal Electronic energy + Delta-G solvation = -29479.760042 eV Core-core repulsion = 25339.005088 eV Total energy + Delta-G solvation = -4140.754954 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.11863 -41.77370 -40.92371 -39.44134 -37.85925 -37.49681 -35.17107 -34.07763 -33.57494 -31.70785 -30.93270 -28.63423 -28.12957 -26.88856 -26.84299 -25.27868 -23.93468 -22.16299 -21.94484 -21.70784 -21.54313 -20.41933 -19.58812 -18.85092 -18.20128 -18.07200 -17.36529 -16.85008 -16.63322 -16.44412 -16.11784 -16.04051 -15.82901 -15.56949 -15.26388 -14.99617 -14.83211 -14.70215 -14.43725 -14.42611 -14.18464 -13.90495 -13.80900 -13.64833 -13.50829 -13.38251 -13.09157 -13.01017 -12.80224 -12.36168 -12.29571 -12.00038 -11.74175 -11.66257 -11.57315 -11.34732 -11.00666 -10.46747 -10.31504 -10.17052 -10.02849 -9.70251 -9.49181 -4.97671 -0.42475 0.02237 1.00217 1.27199 1.56833 1.61390 1.70300 1.95516 1.98660 2.00094 2.54331 3.03801 3.18464 3.30795 3.34829 3.48341 3.48994 3.52813 3.63152 3.69367 3.89470 3.91088 3.94135 4.04195 4.13187 4.22078 4.24137 4.30334 4.43458 4.49719 4.51854 4.57597 4.59616 4.60999 4.69585 4.71724 4.85203 4.91333 4.94538 4.98638 5.04161 5.04573 5.06429 5.13537 5.22484 5.44492 5.51623 5.76444 6.08990 6.36264 6.49437 6.53926 6.81981 7.11830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.118 4.118 3 C 0.161 3.839 4 O -0.488 6.488 5 C -0.151 4.151 6 C -0.059 4.059 7 O -0.538 6.538 8 Si 0.679 3.321 9 C -0.044 4.044 10 C -0.139 4.139 11 C 0.565 3.435 12 O -0.528 6.528 13 N -0.709 5.709 14 C 0.118 3.882 15 H 0.109 0.891 16 C -0.133 4.133 17 C -0.122 4.122 18 H 0.094 0.906 19 C 0.142 3.858 20 N -0.372 5.372 21 C 0.049 3.951 22 C -0.275 4.275 23 C 0.041 3.959 24 N -0.289 5.289 25 C -0.138 4.138 26 C -0.065 4.065 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.399 0.601 31 H 0.119 0.881 32 H 0.379 0.621 33 H -0.255 1.255 34 H -0.250 1.250 35 H 0.146 0.854 36 H 0.399 0.601 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.172 0.828 42 H 0.146 0.854 43 H 0.182 0.818 44 H 0.078 0.922 45 H 0.102 0.898 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.490 -4.476 0.665 6.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.118 4.118 3 C 0.115 3.885 4 O -0.300 6.300 5 C -0.152 4.152 6 C -0.170 4.170 7 O -0.343 6.343 8 Si 0.580 3.420 9 C -0.062 4.062 10 C -0.142 4.142 11 C 0.352 3.648 12 O -0.405 6.405 13 N -0.361 5.361 14 C 0.013 3.987 15 H 0.127 0.873 16 C -0.172 4.172 17 C -0.141 4.141 18 H 0.112 0.888 19 C 0.020 3.980 20 N -0.155 5.155 21 C -0.097 4.097 22 C -0.304 4.304 23 C -0.145 4.145 24 N -0.110 5.110 25 C -0.177 4.177 26 C -0.084 4.084 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.257 0.743 31 H 0.137 0.863 32 H 0.226 0.774 33 H -0.179 1.179 34 H -0.174 1.174 35 H 0.163 0.837 36 H 0.235 0.765 37 H 0.112 0.888 38 H 0.095 0.905 39 H 0.116 0.884 40 H 0.106 0.894 41 H 0.189 0.811 42 H 0.164 0.836 43 H 0.199 0.801 44 H 0.097 0.903 45 H 0.120 0.880 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.112 -3.187 -1.305 4.040 hybrid contribution -2.082 -0.495 0.535 2.205 sum -4.194 -3.681 -0.770 5.633 Atomic orbital electron populations 1.20697 0.89685 1.03207 1.03091 1.20208 0.97318 0.92096 1.02204 1.18318 0.88825 0.85305 0.96034 1.84698 1.75625 1.35632 1.34035 1.20657 0.93897 0.95991 1.04617 1.24938 1.09685 0.93128 0.89222 1.86513 1.84524 1.47128 1.16170 0.94808 0.76925 0.83717 0.86563 1.20950 1.00019 0.90129 0.95146 1.19793 0.93432 0.93381 1.07558 1.18114 0.87248 0.83464 0.75946 1.90814 1.13195 1.87416 1.49065 1.45550 1.10027 1.05006 1.75473 1.21867 0.97196 0.82148 0.97483 0.87325 1.23401 0.97021 0.99212 0.97519 1.22904 0.99691 0.94726 0.96770 0.88801 1.21789 0.99294 0.97463 0.79406 1.48749 1.22166 1.36645 1.07896 1.22603 0.91248 0.97840 0.97968 1.21557 1.05693 1.08967 0.94188 1.23952 0.93706 0.97554 0.99287 1.77404 1.23006 1.20123 0.90489 1.23365 1.00239 0.98315 0.95761 1.21076 0.92589 0.97764 0.96997 0.90577 0.91200 0.90931 0.74262 0.86318 0.77419 1.17910 1.17442 0.83712 0.76488 0.88801 0.90459 0.88441 0.89409 0.81093 0.83592 0.80127 0.90325 0.88007 0.85144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.22 9.78 36.01 0.35 0.57 16 2 C -0.12 0.05 5.89 -104.54 -0.62 -0.57 16 3 C 0.16 0.11 6.66 -39.02 -0.26 -0.15 16 4 O -0.49 -0.16 11.84 -18.84 -0.22 -0.38 16 5 C -0.15 -0.11 5.27 -104.53 -0.55 -0.67 16 6 C -0.06 -0.03 2.38 36.01 0.09 0.05 16 7 O -0.54 -0.02 12.88 -35.23 -0.45 -0.48 16 8 Si 0.68 0.36 29.91 -169.99 -5.08 -4.73 16 9 C -0.04 -0.05 8.20 -39.22 -0.32 -0.37 16 10 C -0.14 -0.11 5.87 -104.96 -0.62 -0.73 16 11 C 0.56 1.07 7.76 -12.44 -0.10 0.97 16 12 O -0.53 -2.79 15.94 5.29 0.08 -2.70 16 13 N -0.71 0.64 5.21 -54.03 -0.28 0.35 16 14 C 0.12 -0.14 4.33 -67.12 -0.29 -0.43 16 15 H 0.11 0.05 7.46 -51.93 -0.39 -0.34 16 16 C -0.13 0.12 7.43 -25.92 -0.19 -0.07 16 17 C -0.12 0.32 3.71 -89.81 -0.33 -0.01 16 18 H 0.09 -0.18 8.14 -51.93 -0.42 -0.60 16 19 C 0.14 -0.35 6.35 -4.04 -0.03 -0.38 16 20 N -0.37 -0.17 3.68 -61.37 -0.23 -0.40 16 21 C 0.05 -0.02 11.45 -17.22 -0.20 -0.22 16 22 C -0.27 -0.12 10.80 -40.02 -0.43 -0.55 16 23 C 0.04 0.06 12.03 -17.36 -0.21 -0.15 16 24 N -0.29 -0.79 12.42 30.63 0.38 -0.41 16 25 C -0.14 0.51 7.39 -25.91 -0.19 0.32 16 26 C -0.07 0.06 9.18 -39.22 -0.36 -0.30 16 27 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 28 H 0.07 -0.23 8.08 -51.93 -0.42 -0.65 16 29 H 0.07 -0.16 7.53 -51.93 -0.39 -0.55 16 30 H 0.40 -1.26 9.06 45.56 0.41 -0.85 16 31 H 0.12 0.20 7.82 -51.94 -0.41 -0.21 16 32 H 0.38 -1.39 8.70 45.56 0.40 -0.99 16 33 H -0.25 -0.87 7.11 56.52 0.40 -0.47 16 34 H -0.25 -0.81 7.11 56.52 0.40 -0.41 16 35 H 0.15 0.09 4.70 -52.49 -0.25 -0.16 16 36 H 0.40 -1.27 6.72 -40.82 -0.27 -1.55 16 37 H 0.09 -0.08 7.90 -51.93 -0.41 -0.49 16 38 H 0.08 0.10 8.14 -51.93 -0.42 -0.33 16 39 H 0.10 -0.47 8.07 -51.93 -0.42 -0.89 16 40 H 0.09 -0.23 7.84 -51.93 -0.41 -0.64 16 41 H 0.17 -0.62 8.06 -52.49 -0.42 -1.04 16 42 H 0.15 -0.19 8.06 -52.48 -0.42 -0.61 16 43 H 0.18 -0.18 8.06 -52.49 -0.42 -0.60 16 44 H 0.08 -0.33 8.14 -51.93 -0.42 -0.75 16 45 H 0.10 -0.47 8.10 -51.93 -0.42 -0.90 16 46 H 0.13 -0.47 6.39 -52.49 -0.34 -0.81 16 LS Contribution 385.68 15.07 5.81 5.81 Total: 0.00 -10.29 385.68 -9.71 -20.00 By element: Atomic # 1 Polarization: -8.93 SS G_CDS: -5.47 Total: -14.40 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -4.25 Total: -2.67 kcal Atomic # 7 Polarization: -0.33 SS G_CDS: -0.13 Total: -0.45 kcal Atomic # 8 Polarization: -2.97 SS G_CDS: -0.59 Total: -3.56 kcal Atomic # 14 Polarization: 0.36 SS G_CDS: -5.08 Total: -4.73 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -10.29 -9.71 -20.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_13287732.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.385 kcal (2) G-P(sol) polarization free energy of solvation -10.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds