Wall clock time and date at job start Sun Mar 7 2021 04:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38975 * 119.95415 * 2 1 4 4 O 1.35712 * 119.91419 * 359.73976 * 3 2 1 5 5 C 1.39024 * 120.17373 * 180.02562 * 3 2 1 6 6 C 1.50705 * 119.95305 * 179.97438 * 5 3 2 7 7 O 1.42899 * 109.47141 * 74.99895 * 6 5 3 8 8 Si 1.86303 * 109.46691 * 194.99435 * 6 5 3 9 9 C 1.37678 * 120.08993 * 359.97438 * 5 3 2 10 10 C 1.39751 * 119.90830 * 0.02562 * 9 5 3 11 11 C 1.47604 * 120.08801 * 179.97438 * 10 9 5 12 12 O 1.21584 * 119.99778 * 0.02585 * 11 10 9 13 13 N 1.34778 * 120.00427 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99918 * 180.02562 * 13 11 10 15 15 H 1.08993 * 112.85074 * 336.19472 * 14 13 11 16 16 C 1.53783 * 113.61319 * 107.50261 * 14 13 11 17 17 C 1.53780 * 87.08256 * 89.11279 * 16 14 13 18 18 H 1.09003 * 113.61740 * 270.88226 * 17 16 14 19 19 C 1.52999 * 113.61604 * 139.97852 * 17 16 14 20 20 N 1.46498 * 109.47028 * 87.50392 * 19 17 16 21 21 C 1.34953 * 126.03865 * 125.00171 * 20 19 17 22 22 C 1.35311 * 107.74656 * 179.97438 * 21 20 19 23 23 C 1.39866 * 107.92406 * 0.02562 * 22 21 20 24 24 N 1.30848 * 108.20030 * 359.74188 * 23 22 21 25 25 C 1.53785 * 87.08276 * 25.43095 * 17 16 14 26 26 C 1.37715 * 119.95630 * 180.02562 * 2 1 3 27 27 H 1.08995 * 109.47097 * 89.99901 * 1 2 3 28 28 H 1.09000 * 109.47133 * 210.00353 * 1 2 3 29 29 H 1.09004 * 109.47072 * 329.99933 * 1 2 3 30 30 H 0.96703 * 113.99179 * 90.00847 * 4 3 2 31 31 H 1.08988 * 109.47132 * 314.99645 * 6 5 3 32 32 H 0.96702 * 114.00005 * 59.99470 * 7 6 5 33 33 H 1.48504 * 109.99759 * 58.68877 * 8 6 5 34 34 H 1.48506 * 109.99625 * 179.97438 * 8 6 5 35 35 H 1.07996 * 120.04682 * 179.97438 * 9 5 3 36 36 H 0.96998 * 119.99402 * 359.97438 * 13 11 10 37 37 H 1.08998 * 113.61295 * 203.66228 * 16 14 13 38 38 H 1.08995 * 113.61553 * 334.56816 * 16 14 13 39 39 H 1.09002 * 109.47557 * 207.50222 * 19 17 16 40 40 H 1.08999 * 109.47114 * 327.50673 * 19 17 16 41 41 H 1.08000 * 126.12632 * 359.97438 * 21 20 19 42 42 H 1.08005 * 126.03846 * 179.97438 * 22 21 20 43 43 H 1.08002 * 125.90532 * 179.97438 * 23 22 21 44 44 H 1.08995 * 113.61801 * 220.01899 * 25 17 16 45 45 H 1.09002 * 113.68922 * 89.12668 * 25 17 16 46 46 H 1.08000 * 120.04757 * 359.96043 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.2041 0.0000 4 8 1.5197 2.3778 -0.0053 5 6 3.5911 1.2094 -0.0005 6 6 4.3386 2.5181 -0.0011 7 8 4.2725 3.1049 1.3001 8 14 6.1197 2.2156 -0.4562 9 6 4.2860 0.0209 -0.0005 10 6 3.5918 -1.1921 -0.0005 11 6 4.3327 -2.4687 -0.0011 12 8 5.5486 -2.4659 -0.0011 13 7 3.6616 -3.6375 -0.0016 14 6 4.3970 -4.9045 -0.0016 15 1 5.4044 -4.8091 -0.4066 16 6 4.3393 -5.6502 1.3420 17 6 3.0624 -6.3300 0.8202 18 1 2.1503 -5.7771 1.0449 19 6 2.9648 -7.8128 1.1844 20 7 2.3328 -7.9523 2.4986 21 6 1.2406 -8.6934 2.7798 22 6 0.9784 -8.5572 4.1002 23 6 1.9430 -7.7032 4.6447 24 7 2.7586 -7.3441 3.6866 25 6 3.6020 -6.0782 -0.5977 26 6 2.1947 -1.1932 -0.0005 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.3189 2.7200 0.8766 31 1 3.8876 3.1937 -0.7277 32 1 4.6565 2.5573 1.9985 33 1 6.2005 1.5763 -1.7942 34 1 6.8676 3.4986 -0.4609 35 1 5.3659 0.0258 -0.0014 36 1 2.6916 -3.6396 -0.0013 37 1 5.1697 -6.3396 1.4948 38 1 4.1676 -4.9966 2.1972 39 1 2.3658 -8.3321 0.4363 40 1 3.9645 -8.2462 1.2142 41 1 0.6767 -9.2886 2.0767 42 1 0.1671 -9.0246 4.6385 43 1 2.0063 -7.3964 5.6783 44 1 2.8352 -5.7700 -1.3083 45 1 4.2308 -6.8839 -0.9765 46 1 1.6547 -2.1285 -0.0003 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_13287732.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:35:15 Heat of formation + Delta-G solvation = 25.081174 kcal Electronic energy + Delta-G solvation = -29479.859972 eV Core-core repulsion = 25339.005088 eV Total energy + Delta-G solvation = -4140.854884 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.07144 -41.78287 -40.89321 -39.45462 -37.86901 -37.51443 -35.16991 -34.03049 -33.54809 -31.69866 -30.89505 -28.54146 -28.03172 -26.91282 -26.68749 -25.26985 -23.87381 -22.14198 -21.88243 -21.72101 -21.50614 -20.33294 -19.57338 -18.86250 -18.14929 -18.04931 -17.34615 -16.82470 -16.60240 -16.37829 -16.16948 -16.07988 -15.84827 -15.55546 -15.26836 -14.92275 -14.77111 -14.68315 -14.38528 -14.32595 -14.23319 -13.93046 -13.67807 -13.55353 -13.37688 -13.31445 -12.96415 -12.89706 -12.75387 -12.36688 -12.25190 -12.17824 -11.67430 -11.63019 -11.55090 -11.21431 -11.15374 -10.52275 -10.30616 -10.20463 -10.00388 -9.69252 -9.45084 -5.08452 -0.44390 0.03443 1.04980 1.18046 1.50584 1.58876 1.71439 1.83831 1.96627 1.99127 2.51930 3.09078 3.35121 3.36918 3.48201 3.50080 3.53666 3.68055 3.70268 3.81792 3.97483 4.05088 4.12034 4.14036 4.25552 4.32558 4.38783 4.40635 4.50469 4.58330 4.67454 4.69619 4.76866 4.77070 4.81573 4.84692 4.95275 5.00167 5.02792 5.05590 5.07743 5.14708 5.16457 5.19683 5.28103 5.52067 5.57573 5.79239 6.23105 6.38632 6.65458 6.68745 6.83381 7.06929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.121 4.121 3 C 0.154 3.846 4 O -0.498 6.498 5 C -0.157 4.157 6 C -0.051 4.051 7 O -0.546 6.546 8 Si 0.746 3.254 9 C -0.055 4.055 10 C -0.151 4.151 11 C 0.561 3.439 12 O -0.572 6.572 13 N -0.695 5.695 14 C 0.109 3.891 15 H 0.089 0.911 16 C -0.135 4.135 17 C -0.109 4.109 18 H 0.091 0.909 19 C 0.134 3.866 20 N -0.375 5.375 21 C 0.052 3.948 22 C -0.293 4.293 23 C 0.025 3.975 24 N -0.329 5.329 25 C -0.117 4.117 26 C -0.055 4.055 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.413 0.587 31 H 0.109 0.891 32 H 0.395 0.605 33 H -0.296 1.296 34 H -0.286 1.286 35 H 0.142 0.858 36 H 0.412 0.588 37 H 0.090 0.910 38 H 0.050 0.950 39 H 0.130 0.870 40 H 0.088 0.912 41 H 0.206 0.794 42 H 0.158 0.842 43 H 0.192 0.808 44 H 0.094 0.906 45 H 0.117 0.883 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.654 -5.917 0.187 8.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.122 4.122 3 C 0.108 3.892 4 O -0.312 6.312 5 C -0.158 4.158 6 C -0.162 4.162 7 O -0.354 6.354 8 Si 0.653 3.347 9 C -0.074 4.074 10 C -0.154 4.154 11 C 0.350 3.650 12 O -0.452 6.452 13 N -0.346 5.346 14 C 0.004 3.996 15 H 0.107 0.893 16 C -0.174 4.174 17 C -0.128 4.128 18 H 0.109 0.891 19 C 0.014 3.986 20 N -0.158 5.158 21 C -0.094 4.094 22 C -0.323 4.323 23 C -0.160 4.160 24 N -0.151 5.151 25 C -0.156 4.156 26 C -0.074 4.074 27 H 0.094 0.906 28 H 0.105 0.895 29 H 0.093 0.907 30 H 0.273 0.727 31 H 0.126 0.874 32 H 0.245 0.755 33 H -0.223 1.223 34 H -0.213 1.213 35 H 0.159 0.841 36 H 0.251 0.749 37 H 0.108 0.892 38 H 0.069 0.931 39 H 0.148 0.852 40 H 0.106 0.894 41 H 0.222 0.778 42 H 0.176 0.824 43 H 0.209 0.791 44 H 0.112 0.888 45 H 0.135 0.865 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.313 -4.648 -1.746 6.577 hybrid contribution -1.404 -0.047 0.687 1.564 sum -5.717 -4.695 -1.059 7.474 Atomic orbital electron populations 1.20745 0.88276 1.04213 1.03343 1.20433 0.98331 0.91727 1.01661 1.18487 0.88815 0.85904 0.95953 1.84661 1.75504 1.35657 1.35392 1.20621 0.94219 0.95680 1.05324 1.24776 1.09035 0.92935 0.89487 1.86471 1.84779 1.47812 1.16323 0.93997 0.75945 0.80582 0.84219 1.21003 1.00055 0.90602 0.95706 1.19808 0.94280 0.92702 1.08579 1.18349 0.86846 0.84435 0.75400 1.90787 1.14998 1.88017 1.51398 1.45461 1.10664 1.04445 1.74070 1.21950 0.97053 0.82786 0.97833 0.89270 1.23365 0.98317 0.99115 0.96591 1.22773 0.98337 0.94655 0.97065 0.89116 1.22065 0.99979 0.97606 0.78948 1.48996 1.22397 1.36336 1.08065 1.23177 0.90732 0.97154 0.98336 1.21847 1.06127 1.09323 0.94976 1.24304 0.93988 0.97867 0.99877 1.77341 1.24326 1.21751 0.91727 1.23298 1.00004 0.96995 0.95268 1.21332 0.91764 0.98911 0.95382 0.90582 0.89492 0.90717 0.72669 0.87383 0.75503 1.22334 1.21273 0.84067 0.74945 0.89165 0.93083 0.85230 0.89420 0.77762 0.82396 0.79110 0.88780 0.86451 0.82303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.61 9.78 71.24 0.70 1.30 16 2 C -0.12 0.19 5.89 -19.81 -0.12 0.08 16 3 C 0.15 0.20 6.66 22.64 0.15 0.36 16 4 O -0.50 -0.25 11.84 -90.33 -1.07 -1.32 16 5 C -0.16 -0.36 5.27 -19.81 -0.10 -0.47 16 6 C -0.05 -0.11 2.38 71.24 0.17 0.06 16 7 O -0.55 -0.21 12.88 -148.98 -1.92 -2.13 16 8 Si 0.75 2.21 29.91 68.60 2.05 4.26 16 9 C -0.06 -0.18 8.20 22.50 0.18 0.00 16 10 C -0.15 -0.33 5.87 -20.08 -0.12 -0.45 16 11 C 0.56 2.78 7.76 86.72 0.67 3.45 16 12 O -0.57 -7.35 15.94 -3.98 -0.06 -7.41 16 13 N -0.69 1.14 5.21 -443.13 -2.31 -1.17 16 14 C 0.11 -0.21 4.33 45.52 0.20 -0.01 16 15 H 0.09 0.22 7.46 -2.39 -0.02 0.20 16 16 C -0.14 0.11 7.43 31.12 0.23 0.34 16 17 C -0.11 0.68 3.71 -10.27 -0.04 0.64 16 18 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 19 C 0.13 -0.87 6.35 86.38 0.55 -0.33 16 20 N -0.38 -0.06 3.68 -348.06 -1.28 -1.34 16 21 C 0.05 -0.12 11.45 83.54 0.96 0.84 16 22 C -0.29 -0.13 10.80 21.99 0.24 0.11 16 23 C 0.02 0.09 12.03 85.23 1.02 1.11 16 24 N -0.33 -2.03 12.42 -57.02 -0.71 -2.74 16 25 C -0.12 1.05 7.39 31.12 0.23 1.28 16 26 C -0.06 0.15 9.18 22.50 0.21 0.36 16 27 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 28 H 0.09 -0.77 8.08 -2.39 -0.02 -0.79 16 29 H 0.07 -0.43 7.53 -2.39 -0.02 -0.45 16 30 H 0.41 -2.73 9.06 -74.05 -0.67 -3.40 16 31 H 0.11 0.48 7.82 -2.39 -0.02 0.46 16 32 H 0.40 -2.86 8.70 -74.06 -0.64 -3.50 16 33 H -0.30 -2.88 7.11 99.48 0.71 -2.18 16 34 H -0.29 -2.50 7.11 99.48 0.71 -1.79 16 35 H 0.14 0.46 4.70 -2.91 -0.01 0.45 16 36 H 0.41 -3.06 6.72 -92.71 -0.62 -3.68 16 37 H 0.09 -0.03 7.90 -2.39 -0.02 -0.05 16 38 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.13 -1.67 8.07 -2.39 -0.02 -1.69 16 40 H 0.09 -0.55 7.84 -2.39 -0.02 -0.57 16 41 H 0.21 -2.09 8.06 -2.91 -0.02 -2.11 16 42 H 0.16 -0.49 8.06 -2.91 -0.02 -0.52 16 43 H 0.19 -0.16 8.06 -2.91 -0.02 -0.18 16 44 H 0.09 -1.05 8.14 -2.39 -0.02 -1.07 16 45 H 0.12 -1.35 8.10 -2.39 -0.02 -1.37 16 46 H 0.16 -1.49 6.39 -2.91 -0.02 -1.51 16 Total: 0.00 -26.55 385.68 -1.02 -27.58 By element: Atomic # 1 Polarization: -23.56 SS G_CDS: -0.85 Total: -24.41 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 5.13 Total: 8.68 kcal Atomic # 7 Polarization: -0.95 SS G_CDS: -4.30 Total: -5.24 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -3.05 Total: -10.86 kcal Atomic # 14 Polarization: 2.21 SS G_CDS: 2.05 Total: 4.26 kcal Total: -26.55 -1.02 -27.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_13287732.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.656 kcal (2) G-P(sol) polarization free energy of solvation -26.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds