Wall clock time and date at job start Sun Mar 7 2021 04:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86293 * 109.47499 * 2 1 4 4 C 1.50704 * 109.46719 * 119.99673 * 2 1 3 5 5 C 1.38365 * 120.35004 * 65.29196 * 4 2 1 6 6 C 1.40021 * 118.28720 * 180.25679 * 5 4 2 7 7 C 1.47844 * 120.55782 * 179.75538 * 6 5 4 8 8 O 1.21551 * 119.99656 * 359.97438 * 7 6 5 9 9 N 1.34768 * 120.00060 * 179.97438 * 7 6 5 10 10 C 1.46503 * 120.00003 * 180.02562 * 9 7 6 11 11 H 1.08995 * 112.84551 * 334.65604 * 10 9 7 12 12 C 1.53783 * 113.61671 * 105.86183 * 10 9 7 13 13 C 1.54053 * 86.98548 * 89.15933 * 12 10 9 14 14 H 1.09000 * 113.68951 * 270.87025 * 13 12 10 15 15 C 1.53003 * 113.61631 * 139.97882 * 13 12 10 16 16 N 1.46503 * 109.47022 * 87.50255 * 15 13 12 17 17 C 1.34952 * 126.03463 * 124.71671 * 16 15 13 18 18 C 1.35314 * 107.74187 * 179.84331 * 17 16 15 19 19 C 1.39874 * 107.92443 * 0.41745 * 18 17 16 20 20 N 1.30838 * 108.19487 * 359.74213 * 19 18 17 21 21 C 1.53781 * 87.07837 * 25.42938 * 13 12 10 22 22 C 1.39518 * 118.88264 * 359.73533 * 6 5 4 23 23 N 1.31696 * 120.56562 * 359.97438 * 22 6 5 24 24 C 1.31924 * 121.88228 * 0.02562 * 23 22 6 25 25 H 0.96705 * 113.99432 * 59.99828 * 1 2 3 26 26 H 1.09003 * 109.47218 * 239.99317 * 2 1 3 27 27 H 1.48509 * 109.99832 * 298.67680 * 3 2 1 28 28 H 1.48496 * 110.00216 * 59.99345 * 3 2 1 29 29 H 1.08002 * 120.84920 * 359.97438 * 5 4 2 30 30 H 0.96999 * 120.00236 * 359.97438 * 9 7 6 31 31 H 1.08993 * 113.61283 * 203.66493 * 12 10 9 32 32 H 1.09004 * 113.61164 * 334.56145 * 12 10 9 33 33 H 1.08994 * 109.46679 * 207.50336 * 15 13 12 34 34 H 1.09000 * 109.47123 * 327.50740 * 15 13 12 35 35 H 1.07996 * 126.12244 * 359.97438 * 17 16 15 36 36 H 1.08004 * 126.03833 * 180.16418 * 18 17 16 37 37 H 1.07998 * 125.89921 * 179.71842 * 19 18 17 38 38 H 1.08996 * 113.61201 * 220.02170 * 21 13 12 39 39 H 1.09000 * 113.68717 * 89.13102 * 21 13 12 40 40 H 1.08001 * 119.71609 * 179.97438 * 22 6 5 41 41 H 1.08002 * 119.45755 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7563 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 1.6936 -2.0625 1.4032 6 6 2.1751 -2.6778 2.5652 7 6 1.9451 -4.1187 2.8033 8 8 1.3331 -4.7794 1.9870 9 7 2.4139 -4.6995 3.9254 10 6 2.1865 -6.1274 4.1611 11 1 1.3063 -6.5070 3.6423 12 6 3.4416 -6.9928 3.9592 13 6 3.7541 -6.7425 5.4468 14 1 4.3521 -5.8487 5.6244 15 6 4.2961 -7.9742 6.1749 16 7 5.7523 -8.0294 6.0238 17 6 6.6525 -8.0969 7.0269 18 6 7.8861 -8.1342 6.4720 19 6 7.7350 -8.0782 5.0826 20 7 6.4563 -8.0153 4.8129 21 6 2.2450 -6.5236 5.6458 22 6 2.8759 -1.9083 3.4943 23 7 3.0817 -0.6249 3.2819 24 6 2.6399 -0.0187 2.1966 25 1 -0.3932 0.4418 -0.7651 26 1 1.7923 -0.5139 -0.8899 27 1 1.5880 2.4584 -1.2244 28 1 1.5615 2.4679 1.2084 29 1 1.1469 -2.6277 0.6629 30 1 2.9026 -4.1723 4.5766 31 1 3.2210 -8.0349 3.7288 32 1 4.1704 -6.5528 3.2784 33 1 4.0427 -7.9113 7.2332 34 1 3.8522 -8.8734 5.7477 35 1 6.4284 -8.1195 8.0831 36 1 8.8222 -8.1924 7.0075 37 1 8.5356 -8.0852 4.3577 38 1 2.0085 -5.7052 6.3258 39 1 1.6967 -7.4371 5.8759 40 1 3.2529 -2.3690 4.3954 41 1 2.8313 1.0357 2.0621 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_13287814.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:35:24 Heat of formation + Delta-G solvation = 86.511618 kcal Electronic energy + Delta-G solvation = -25043.442215 eV Core-core repulsion = 21314.045055 eV Total energy + Delta-G solvation = -3729.397160 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.13344 -41.90459 -40.88440 -39.37540 -38.03720 -35.27198 -33.93252 -33.84862 -32.71578 -30.92109 -28.61983 -27.33342 -26.72098 -26.05190 -24.08522 -23.76366 -21.91695 -21.84969 -21.57272 -20.39253 -19.11846 -18.70782 -18.23678 -18.04916 -17.79525 -16.93575 -16.48610 -16.36031 -16.10160 -15.79995 -15.48405 -15.28425 -15.02290 -14.76373 -14.69840 -14.41368 -14.31685 -14.15170 -13.88461 -13.67721 -13.55376 -13.39057 -12.82174 -12.73058 -12.21873 -12.12247 -11.69658 -11.56592 -11.50084 -11.22991 -11.13251 -10.78440 -10.57720 -10.37248 -10.30768 -10.14672 -9.45690 -4.96394 -0.63275 -0.07738 1.04343 1.19665 1.56046 1.58187 1.70846 1.84751 1.92170 1.98479 2.53832 3.02599 3.20476 3.34731 3.45426 3.53024 3.58809 3.62811 3.68661 3.71867 3.78911 4.03137 4.08343 4.11597 4.17093 4.24425 4.37666 4.43924 4.48687 4.64441 4.74602 4.76702 4.80341 4.81732 4.90143 4.94492 5.01347 5.05028 5.11305 5.19051 5.26535 5.49692 5.78458 6.22608 6.28391 6.50293 6.59236 6.82646 6.96571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.087 4.087 3 Si 0.771 3.229 4 C -0.137 4.137 5 C -0.003 4.003 6 C -0.198 4.198 7 C 0.568 3.432 8 O -0.573 6.573 9 N -0.692 5.692 10 C 0.109 3.891 11 H 0.088 0.912 12 C -0.136 4.136 13 C -0.110 4.110 14 H 0.091 0.909 15 C 0.134 3.866 16 N -0.376 5.376 17 C 0.053 3.947 18 C -0.293 4.293 19 C 0.025 3.975 20 N -0.330 5.330 21 C -0.115 4.115 22 C 0.146 3.854 23 N -0.492 5.492 24 C 0.128 3.872 25 H 0.399 0.601 26 H 0.100 0.900 27 H -0.279 1.279 28 H -0.287 1.287 29 H 0.139 0.861 30 H 0.414 0.586 31 H 0.090 0.910 32 H 0.049 0.951 33 H 0.131 0.869 34 H 0.088 0.912 35 H 0.206 0.794 36 H 0.159 0.841 37 H 0.192 0.808 38 H 0.096 0.904 39 H 0.119 0.881 40 H 0.191 0.809 41 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.598 1.140 4.714 5.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.195 4.195 3 Si 0.674 3.326 4 C -0.139 4.139 5 C -0.029 4.029 6 C -0.203 4.203 7 C 0.355 3.645 8 O -0.453 6.453 9 N -0.343 5.343 10 C 0.004 3.996 11 H 0.106 0.894 12 C -0.175 4.175 13 C -0.129 4.129 14 H 0.110 0.890 15 C 0.014 3.986 16 N -0.158 5.158 17 C -0.093 4.093 18 C -0.323 4.323 19 C -0.161 4.161 20 N -0.153 5.153 21 C -0.154 4.154 22 C -0.013 4.013 23 N -0.200 5.200 24 C -0.028 4.028 25 H 0.250 0.750 26 H 0.118 0.882 27 H -0.206 1.206 28 H -0.214 1.214 29 H 0.157 0.843 30 H 0.252 0.748 31 H 0.109 0.891 32 H 0.068 0.932 33 H 0.149 0.851 34 H 0.106 0.894 35 H 0.223 0.777 36 H 0.176 0.824 37 H 0.209 0.791 38 H 0.115 0.885 39 H 0.137 0.863 40 H 0.208 0.792 41 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 1.465 1.719 4.424 4.967 hybrid contribution -0.707 -0.618 -0.655 1.146 sum 0.758 1.100 3.769 3.998 Atomic orbital electron populations 1.86540 1.18180 1.80936 1.51304 1.25021 0.84442 1.12676 0.97407 0.94095 0.89929 0.71091 0.77460 1.20481 1.01017 0.94089 0.98285 1.21671 0.91930 0.94033 0.95275 1.20987 1.05835 0.94609 0.98840 1.18179 0.78129 0.86599 0.81613 1.90788 1.42705 1.65482 1.46301 1.45444 1.56797 1.10368 1.21697 1.21973 0.98762 0.79859 0.99039 0.89393 1.23418 0.96799 1.00379 0.96868 1.22835 0.96818 0.97943 0.95296 0.89044 1.22068 0.73448 0.99137 1.03935 1.48998 1.07355 1.55995 1.03476 1.23186 0.89364 1.00361 0.96434 1.21854 0.99156 1.17298 0.93962 1.24304 0.94422 0.99860 0.97471 1.77333 1.06247 1.25426 1.06260 1.23289 0.94106 1.04163 0.93803 1.23416 0.91077 0.89099 0.97681 1.67812 1.20209 1.10957 1.20998 1.23209 0.91148 1.00813 0.87627 0.74961 0.88245 1.20559 1.21432 0.84340 0.74768 0.89112 0.93224 0.85108 0.89389 0.77691 0.82358 0.79127 0.88533 0.86293 0.79239 0.80203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.14 12.82 -148.98 -1.91 -3.05 16 2 C -0.09 0.10 2.81 71.24 0.20 0.30 16 3 Si 0.77 -3.10 29.87 68.60 2.05 -1.05 16 4 C -0.14 -0.36 5.38 -19.81 -0.11 -0.47 16 5 C 0.00 -0.01 9.38 22.73 0.21 0.20 16 6 C -0.20 -0.84 5.89 -19.99 -0.12 -0.96 16 7 C 0.57 3.69 7.78 86.79 0.68 4.36 16 8 O -0.57 -8.62 16.04 -3.87 -0.06 -8.69 16 9 N -0.69 0.49 5.22 -442.91 -2.31 -1.83 16 10 C 0.11 -0.12 4.30 45.52 0.20 0.08 16 11 H 0.09 0.29 7.50 -2.39 -0.02 0.27 16 12 C -0.14 -0.02 7.45 31.21 0.23 0.21 16 13 C -0.11 0.60 3.72 -10.17 -0.04 0.57 16 14 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 15 C 0.13 -0.79 6.35 86.38 0.55 -0.25 16 16 N -0.38 -0.34 3.68 -348.06 -1.28 -1.62 16 17 C 0.05 -0.09 11.45 83.54 0.96 0.87 16 18 C -0.29 -0.34 10.80 21.99 0.24 -0.11 16 19 C 0.02 0.11 12.03 85.24 1.03 1.13 16 20 N -0.33 -2.33 12.42 -57.02 -0.71 -3.04 16 21 C -0.12 0.98 7.38 31.12 0.23 1.21 16 22 C 0.15 0.06 10.71 85.02 0.91 0.97 16 23 N -0.49 -1.49 10.35 -194.76 -2.01 -3.50 16 24 C 0.13 0.20 9.84 84.71 0.83 1.04 16 25 H 0.40 -2.52 8.74 -74.05 -0.65 -3.17 16 26 H 0.10 -0.47 7.96 -2.39 -0.02 -0.49 16 27 H -0.28 -0.01 7.11 99.48 0.71 0.70 16 28 H -0.29 -0.64 7.05 99.48 0.70 0.06 16 29 H 0.14 1.06 7.74 -2.91 -0.02 1.03 16 30 H 0.41 -2.81 6.77 -92.71 -0.63 -3.44 16 31 H 0.09 0.05 7.90 -2.39 -0.02 0.03 16 32 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.13 -1.63 8.07 -2.39 -0.02 -1.65 16 34 H 0.09 -0.50 7.85 -2.39 -0.02 -0.52 16 35 H 0.21 -1.98 8.06 -2.91 -0.02 -2.00 16 36 H 0.16 -0.39 8.06 -2.91 -0.02 -0.41 16 37 H 0.19 0.01 8.06 -2.91 -0.02 -0.01 16 38 H 0.10 -1.06 8.14 -2.39 -0.02 -1.08 16 39 H 0.12 -1.33 8.10 -2.39 -0.02 -1.35 16 40 H 0.19 -1.37 6.42 -2.91 -0.02 -1.39 16 41 H 0.18 -0.56 4.87 -2.91 -0.01 -0.57 16 Total: 0.00 -27.34 350.35 -0.40 -27.74 By element: Atomic # 1 Polarization: -13.96 SS G_CDS: -0.16 Total: -14.13 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 6.00 Total: 9.16 kcal Atomic # 7 Polarization: -3.67 SS G_CDS: -6.31 Total: -9.99 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -1.97 Total: -11.74 kcal Atomic # 14 Polarization: -3.10 SS G_CDS: 2.05 Total: -1.05 kcal Total: -27.34 -0.40 -27.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_13287814.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.255 kcal (2) G-P(sol) polarization free energy of solvation -27.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds