Wall clock time and date at job start Sun Mar 7 2021 04:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36412 * 125.79972 * 2 1 4 4 C 1.47382 * 127.19183 * 359.97438 * 3 2 1 5 5 O 1.21610 * 120.00318 * 359.70903 * 4 3 2 6 6 N 1.34783 * 119.99647 * 179.71019 * 4 3 2 7 7 C 1.46502 * 119.99683 * 179.97438 * 6 4 3 8 8 H 1.09007 * 112.90475 * 23.75266 * 7 6 4 9 9 C 1.53779 * 113.61301 * 154.99921 * 7 6 4 10 10 C 1.53787 * 87.07963 * 89.11687 * 9 7 6 11 11 H 1.08994 * 113.61447 * 270.88515 * 10 9 7 12 12 C 1.52997 * 113.61251 * 139.97890 * 10 9 7 13 13 N 1.46498 * 109.47070 * 175.00109 * 12 10 9 14 14 C 1.34951 * 126.03669 * 125.00221 * 13 12 10 15 15 C 1.35322 * 107.74580 * 179.97438 * 14 13 12 16 16 C 1.39861 * 107.91998 * 359.97438 * 15 14 13 17 17 N 1.30843 * 108.20504 * 359.74453 * 16 15 14 18 18 C 1.53779 * 113.61564 * 252.49989 * 7 6 4 19 19 C 1.47025 * 105.61479 * 179.73606 * 3 2 1 20 20 C 1.34179 * 105.95385 * 0.25829 * 19 3 2 21 21 C 1.50696 * 125.43688 * 180.02562 * 20 19 3 22 22 O 1.42900 * 109.47039 * 65.00063 * 21 20 19 23 23 Si 1.86301 * 109.46987 * 185.00185 * 21 20 19 24 24 O 1.33654 * 125.80152 * 180.18590 * 2 1 3 25 25 H 1.09002 * 109.47136 * 90.00384 * 1 2 3 26 26 H 1.09002 * 109.47088 * 210.00219 * 1 2 3 27 27 H 1.08993 * 109.47081 * 330.00412 * 1 2 3 28 28 H 0.96996 * 119.99920 * 0.02562 * 6 4 3 29 29 H 1.08997 * 113.61646 * 334.57319 * 9 7 6 30 30 H 1.09000 * 113.61527 * 203.66590 * 9 7 6 31 31 H 1.08998 * 109.47573 * 295.00161 * 12 10 9 32 32 H 1.09003 * 109.47157 * 55.00680 * 12 10 9 33 33 H 1.08004 * 126.12827 * 359.95637 * 14 13 12 34 34 H 1.08002 * 126.03531 * 180.02562 * 15 14 13 35 35 H 1.08003 * 125.90094 * 180.02562 * 16 15 14 36 36 H 1.09002 * 113.61557 * 156.33711 * 18 7 6 37 37 H 1.09004 * 113.61501 * 25.43131 * 18 7 6 38 38 H 1.08001 * 127.02284 * 180.27953 * 19 3 2 39 39 H 1.08998 * 109.47328 * 304.99914 * 21 20 19 40 40 H 0.96708 * 113.99733 * 179.97438 * 22 21 20 41 41 H 1.48504 * 109.99754 * 299.99994 * 23 21 20 42 42 H 1.48501 * 110.00318 * 61.31701 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.1064 0.0000 4 6 1.8739 2.5158 -0.0005 5 8 0.6889 2.7892 -0.0064 6 7 2.7930 3.5016 0.0055 7 6 2.3645 4.9025 0.0044 8 1 1.3593 5.0390 0.4034 9 6 3.4021 5.8645 0.6065 10 6 3.9921 5.9884 -0.8083 11 1 4.7559 5.2430 -1.0297 12 6 4.4257 7.4106 -1.1691 13 7 5.0795 7.4040 -2.4801 14 6 4.7336 8.1592 -3.5437 15 6 5.5799 7.8585 -4.5558 16 6 6.4740 6.8868 -4.0948 17 7 6.1787 6.6178 -2.8489 18 6 2.5969 5.6168 -1.3375 19 6 3.6849 0.5991 0.0065 20 6 3.5860 -0.7390 0.0039 21 6 4.7459 -1.7010 0.0092 22 8 5.4690 -1.5686 1.2346 23 14 4.1079 -3.4441 -0.1503 24 8 2.2889 -1.0840 -0.0035 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5137 28 1 3.7381 3.2834 0.0097 29 1 4.0753 5.3897 1.3202 30 1 2.9709 6.7923 0.9825 31 1 3.5507 8.0597 -1.2028 32 1 5.1231 7.7797 -0.4172 33 1 3.9257 8.8750 -3.5806 34 1 5.5677 8.2928 -5.5445 35 1 7.2734 6.4393 -4.6669 36 1 1.9455 6.4768 -1.4929 37 1 2.6200 4.9418 -2.1932 38 1 4.5928 1.1840 0.0125 39 1 5.4067 -1.4780 -0.8285 40 1 6.2311 -2.1595 1.3074 41 1 3.2056 -3.7605 0.9860 42 1 3.3811 -3.6034 -1.4355 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_13308374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:35:28 Heat of formation + Delta-G solvation = 59.488009 kcal Electronic energy + Delta-G solvation = -26028.818319 eV Core-core repulsion = 22173.219187 eV Total energy + Delta-G solvation = -3855.599132 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.96231 -42.07764 -41.21308 -39.45853 -37.92699 -35.21364 -34.37240 -33.52724 -33.11771 -30.99288 -29.64788 -28.55668 -26.78191 -26.06500 -24.78892 -23.85633 -22.50480 -21.96388 -21.64852 -20.86618 -20.10178 -18.82052 -18.58795 -18.15263 -17.46345 -17.27369 -17.07137 -16.50382 -16.12092 -15.88994 -15.81144 -15.59790 -15.37039 -14.85419 -14.62852 -14.37829 -14.34557 -14.22467 -14.18942 -14.04006 -13.81354 -13.55633 -13.48612 -13.20767 -12.81113 -12.65374 -12.25389 -12.23477 -11.69145 -11.58367 -11.37612 -11.27712 -11.10541 -10.50464 -10.33825 -10.21150 -9.73504 -9.47471 -5.11260 0.03492 0.65776 1.00429 1.13198 1.35766 1.61316 1.66581 1.95287 1.97586 1.99507 2.07727 3.09533 3.35832 3.47106 3.49623 3.55740 3.58019 3.62686 3.76648 3.95908 3.98902 4.08474 4.19057 4.20307 4.31465 4.38764 4.41280 4.48558 4.50956 4.57768 4.66117 4.68274 4.71163 4.78516 4.90416 4.93535 4.96274 5.01978 5.06009 5.12866 5.16202 5.49225 5.72109 5.75543 6.18392 6.32921 6.78130 6.81063 7.00549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.077 3.923 3 C -0.266 4.266 4 C 0.594 3.406 5 O -0.569 6.569 6 N -0.695 5.695 7 C 0.112 3.888 8 H 0.095 0.905 9 C -0.119 4.119 10 C -0.114 4.114 11 H 0.085 0.915 12 C 0.136 3.864 13 N -0.374 5.374 14 C 0.052 3.948 15 C -0.295 4.295 16 C 0.029 3.971 17 N -0.335 5.335 18 C -0.142 4.142 19 C -0.142 4.142 20 C -0.035 4.035 21 C -0.038 4.038 22 O -0.559 6.559 23 Si 0.808 3.192 24 O -0.192 6.192 25 H 0.100 0.900 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.411 0.589 29 H 0.083 0.917 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.092 0.908 33 H 0.204 0.796 34 H 0.159 0.841 35 H 0.196 0.804 36 H 0.109 0.891 37 H 0.047 0.953 38 H 0.182 0.818 39 H 0.128 0.872 40 H 0.414 0.586 41 H -0.307 1.307 42 H -0.295 1.295 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.310 0.836 -0.381 4.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.024 3.976 3 C -0.271 4.271 4 C 0.383 3.617 5 O -0.451 6.451 6 N -0.346 5.346 7 C 0.007 3.993 8 H 0.113 0.887 9 C -0.158 4.158 10 C -0.133 4.133 11 H 0.103 0.897 12 C 0.016 3.984 13 N -0.157 5.157 14 C -0.095 4.095 15 C -0.324 4.324 16 C -0.156 4.156 17 N -0.158 5.158 18 C -0.180 4.180 19 C -0.161 4.161 20 C -0.082 4.082 21 C -0.147 4.147 22 O -0.371 6.371 23 Si 0.714 3.286 24 O -0.090 6.090 25 H 0.119 0.881 26 H 0.112 0.888 27 H 0.122 0.878 28 H 0.247 0.753 29 H 0.102 0.898 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.111 0.889 33 H 0.221 0.779 34 H 0.177 0.823 35 H 0.213 0.787 36 H 0.127 0.873 37 H 0.066 0.934 38 H 0.200 0.800 39 H 0.146 0.854 40 H 0.268 0.732 41 H -0.235 1.235 42 H -0.222 1.222 Dipole moment (debyes) X Y Z Total from point charges 2.510 0.002 0.826 2.642 hybrid contribution 0.112 0.899 -0.966 1.325 sum 2.622 0.901 -0.140 2.776 Atomic orbital electron populations 1.20729 0.82314 1.05579 1.05331 1.23350 0.94977 0.82954 0.96302 1.21274 0.94152 0.93688 1.17951 1.17243 0.85276 0.84126 0.75099 1.90744 1.17727 1.84396 1.52192 1.45387 1.09778 1.05237 1.74170 1.21929 0.99924 0.79607 0.97851 0.88686 1.23318 0.96875 1.00241 0.95343 1.22800 0.96593 0.96543 0.97363 0.89691 1.22056 0.98057 0.98143 0.80131 1.48960 1.23973 1.30882 1.11848 1.23169 1.01266 0.97694 0.87330 1.21862 1.01636 1.06486 1.02405 1.24307 1.00755 0.97994 0.92574 1.77244 1.04092 1.18348 1.16092 1.23521 0.96982 1.00898 0.96616 1.22826 0.96562 0.93342 1.03360 1.21851 0.82327 0.95434 1.08614 1.23980 0.91495 1.07362 0.91839 1.86411 1.47481 1.67370 1.35874 0.94324 0.82842 0.75526 0.75889 1.83702 1.17411 1.35824 1.72062 0.88124 0.88777 0.87846 0.75306 0.89788 0.85769 0.85530 0.88933 0.77916 0.82317 0.78748 0.87252 0.93446 0.80035 0.85449 0.73216 1.23528 1.22250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 9.88 71.24 0.70 0.29 16 2 C 0.08 0.73 7.37 25.26 0.19 0.92 16 3 C -0.27 -2.34 6.31 -18.99 -0.12 -2.46 16 4 C 0.59 5.49 7.81 86.65 0.68 6.17 16 5 O -0.57 -8.34 14.45 -4.06 -0.06 -8.40 16 6 N -0.70 -1.93 5.26 -443.33 -2.33 -4.26 16 7 C 0.11 0.00 4.32 45.52 0.20 0.20 16 8 H 0.10 0.29 7.47 -2.38 -0.02 0.27 16 9 C -0.12 0.72 7.39 31.12 0.23 0.95 16 10 C -0.11 0.39 3.75 -10.27 -0.04 0.35 16 11 H 0.08 0.09 7.97 -2.39 -0.02 0.07 16 12 C 0.14 -0.62 6.34 86.38 0.55 -0.08 16 13 N -0.37 -0.76 3.68 -348.06 -1.28 -2.04 16 14 C 0.05 -0.01 11.45 83.54 0.96 0.95 16 15 C -0.29 -0.62 10.80 21.99 0.24 -0.38 16 16 C 0.03 0.13 12.02 85.23 1.02 1.16 16 17 N -0.34 -2.48 12.28 -57.02 -0.70 -3.18 16 18 C -0.14 0.18 7.43 31.12 0.23 0.41 16 19 C -0.14 -0.72 10.48 23.65 0.25 -0.47 16 20 C -0.04 -0.22 6.22 24.76 0.15 -0.07 16 21 C -0.04 0.06 2.96 71.23 0.21 0.27 16 22 O -0.56 1.37 12.86 -148.98 -1.92 -0.55 16 23 Si 0.81 -1.25 32.09 68.60 2.20 0.95 16 24 O -0.19 -1.96 8.90 4.44 0.04 -1.92 16 25 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 26 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 27 H 0.10 0.73 6.49 -2.39 -0.02 0.71 16 28 H 0.41 -0.38 7.87 -92.71 -0.73 -1.11 16 29 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 30 H 0.12 -1.26 8.10 -2.39 -0.02 -1.28 16 31 H 0.13 -1.32 7.77 -2.39 -0.02 -1.34 16 32 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 33 H 0.20 -1.59 8.06 -2.91 -0.02 -1.62 16 34 H 0.16 -0.25 8.06 -2.91 -0.02 -0.28 16 35 H 0.20 -0.08 8.06 -2.91 -0.02 -0.10 16 36 H 0.11 -0.50 7.90 -2.39 -0.02 -0.52 16 37 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.18 -0.14 7.74 -2.91 -0.02 -0.16 16 39 H 0.13 -1.02 7.96 -2.39 -0.02 -1.04 16 40 H 0.41 -5.80 8.74 -74.05 -0.65 -6.45 16 41 H -0.31 -2.48 7.11 99.48 0.71 -1.77 16 42 H -0.29 -1.57 7.11 99.48 0.71 -0.86 16 Total: 0.00 -28.25 361.18 1.12 -27.13 By element: Atomic # 1 Polarization: -15.64 SS G_CDS: -0.28 Total: -15.92 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 5.45 Total: 8.19 kcal Atomic # 7 Polarization: -5.18 SS G_CDS: -4.31 Total: -9.49 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -1.93 Total: -10.87 kcal Atomic # 14 Polarization: -1.25 SS G_CDS: 2.20 Total: 0.95 kcal Total: -28.25 1.12 -27.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_13308374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.619 kcal (2) G-P(sol) polarization free energy of solvation -28.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds