Wall clock time and date at job start Sun Mar 7 2021 04:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86296 * 109.47134 * 2 1 4 4 C 1.50703 * 109.47010 * 240.00505 * 2 1 3 5 5 C 1.33748 * 125.11703 * 299.99680 * 4 2 1 6 6 C 1.37793 * 115.08101 * 179.97438 * 5 4 2 7 7 C 1.34982 * 114.70252 * 0.02562 * 6 5 4 8 8 C 1.47559 * 125.27501 * 180.02562 * 7 6 5 9 9 C 1.39821 * 119.99743 * 179.97438 * 8 7 6 10 10 C 1.36565 * 120.00294 * 179.97438 * 9 8 7 11 11 C 1.39835 * 119.99354 * 0.02562 * 10 9 8 12 12 C 1.47557 * 119.99708 * 180.02562 * 11 10 9 13 13 O 1.21597 * 120.00271 * 0.02562 * 12 11 10 14 14 N 1.34781 * 119.99998 * 180.02562 * 12 11 10 15 15 C 1.46504 * 119.99737 * 180.02562 * 14 12 11 16 16 H 1.08988 * 112.85451 * 23.80670 * 15 14 12 17 17 C 1.53784 * 113.61052 * 155.00627 * 15 14 12 18 18 C 1.53778 * 87.08336 * 89.19610 * 17 15 14 19 19 H 1.08999 * 113.61566 * 270.79794 * 18 17 15 20 20 C 1.53000 * 113.61239 * 139.97850 * 18 17 15 21 21 N 1.46503 * 109.47420 * 174.99959 * 20 18 17 22 22 C 1.34940 * 126.03757 * 124.99460 * 21 20 18 23 23 C 1.35317 * 107.74438 * 179.77616 * 22 21 20 24 24 C 1.39872 * 107.92021 * 0.23195 * 23 22 21 25 25 N 1.30838 * 108.20312 * 359.97438 * 24 23 22 26 26 C 1.53778 * 87.08252 * 25.43444 * 18 17 15 27 27 C 1.39831 * 120.00042 * 0.28550 * 11 10 9 28 28 C 1.36564 * 119.99749 * 359.43711 * 27 11 10 29 29 S 1.75854 * 125.12152 * 120.27691 * 4 2 1 30 30 H 0.96702 * 113.99466 * 299.99781 * 1 2 3 31 31 H 1.08995 * 109.47456 * 120.00571 * 2 1 3 32 32 H 1.48499 * 110.00171 * 178.68859 * 3 2 1 33 33 H 1.48510 * 110.00062 * 300.00231 * 3 2 1 34 34 H 1.08008 * 122.45723 * 0.02562 * 5 4 2 35 35 H 1.08003 * 122.64853 * 180.02562 * 6 5 4 36 36 H 1.08005 * 119.99842 * 359.97438 * 9 8 7 37 37 H 1.07992 * 120.00174 * 179.97438 * 10 9 8 38 38 H 0.96997 * 119.99754 * 0.02562 * 14 12 11 39 39 H 1.09005 * 113.61430 * 334.64529 * 17 15 14 40 40 H 1.08999 * 113.61164 * 203.74744 * 17 15 14 41 41 H 1.09005 * 109.47317 * 55.00181 * 20 18 17 42 42 H 1.08999 * 109.47532 * 295.00483 * 20 18 17 43 43 H 1.08002 * 126.13053 * 0.04913 * 22 21 20 44 44 H 1.08003 * 126.04109 * 180.21059 * 23 22 21 45 45 H 1.08001 * 125.89461 * 180.02562 * 24 23 22 46 46 H 1.08997 * 113.61679 * 89.11485 * 26 18 17 47 47 H 1.09002 * 113.61284 * 220.02195 * 26 18 17 48 48 H 1.08003 * 119.99562 * 179.69575 * 27 11 10 49 49 H 1.08003 * 119.99682 * 180.25372 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7103 -1.2306 5 6 1.6721 -1.9847 -1.5430 6 6 2.2370 -2.4239 -2.7205 7 6 2.9666 -1.4968 -3.3765 8 6 3.6709 -1.7147 -4.6547 9 6 4.3969 -0.6725 -5.2393 10 6 5.0492 -0.8741 -6.4220 11 6 4.9905 -2.1228 -7.0486 12 6 5.6958 -2.3410 -8.3262 13 8 6.3283 -1.4350 -8.8340 14 7 5.6389 -3.5444 -8.9305 15 6 6.3396 -3.7611 -10.1987 16 1 7.1713 -3.0723 -10.3458 17 6 6.7050 -5.2323 -10.4569 18 6 5.3310 -5.3732 -11.1330 19 1 4.5330 -5.6543 -10.4458 20 6 5.3559 -6.2330 -12.3983 21 7 3.9898 -6.4051 -12.8988 22 6 3.5566 -6.1089 -14.1420 23 6 2.2402 -6.4160 -14.2041 24 6 1.8545 -6.9120 -12.9544 25 7 2.9019 -6.9035 -12.1704 26 6 5.4017 -3.8628 -11.4133 27 6 4.2591 -3.1632 -6.4672 28 6 3.6115 -2.9630 -5.2816 29 16 2.9522 0.0095 -2.4683 30 1 -0.3932 0.4417 0.7651 31 1 1.7924 -0.5139 0.8899 32 1 3.5346 1.7703 0.0319 33 1 1.5614 2.4679 -1.2085 34 1 1.0638 -2.6224 -0.9186 35 1 2.1065 -3.4306 -3.0895 36 1 4.4418 0.2921 -4.7554 37 1 5.6096 -0.0690 -6.8737 38 1 5.1340 -4.2669 -8.5256 39 1 6.8064 -5.8233 -9.5466 40 1 7.5436 -5.3602 -11.1414 41 1 5.7833 -7.2086 -12.1663 42 1 5.9626 -5.7423 -13.1593 43 1 4.1545 -5.7039 -14.9451 44 1 1.6003 -6.2985 -15.0662 45 1 0.8635 -7.2452 -12.6838 46 1 5.8840 -3.6163 -12.3592 47 1 4.4509 -3.3481 -11.2750 48 1 4.2098 -4.1261 -6.9537 49 1 3.0500 -3.7678 -4.8305 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688104_13308390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:35:33 Heat of formation + Delta-G solvation = 108.700991 kcal Electronic energy + Delta-G solvation = -31979.111814 eV Core-core repulsion = 27581.275215 eV Total energy + Delta-G solvation = -4397.836599 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 396.129 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.10238 -41.54616 -40.46344 -39.41435 -38.78369 -37.44795 -35.17582 -33.90019 -33.18067 -32.23028 -30.98593 -30.58616 -28.65348 -27.23355 -26.89762 -25.01085 -24.21649 -23.92169 -23.29879 -22.08019 -21.78924 -21.61959 -20.26167 -20.14715 -19.14426 -18.61982 -18.36331 -18.15506 -17.25371 -17.06040 -16.57570 -16.33396 -16.15995 -15.92343 -15.75844 -15.64220 -15.38057 -15.32002 -14.99498 -14.69434 -14.58879 -14.50293 -14.33546 -14.23888 -14.10535 -13.95677 -13.67266 -13.57673 -13.38818 -13.21110 -13.10263 -12.88160 -12.66199 -12.34893 -12.33088 -12.11379 -11.79493 -11.73196 -11.56838 -11.43386 -11.00477 -10.80854 -10.41612 -10.29426 -10.23989 -10.13986 -9.57970 -9.45960 -9.04822 -5.31017 -0.91204 0.22561 0.29476 0.40413 0.74188 1.01589 1.12306 1.47739 1.57654 1.59112 1.85094 1.97311 1.98863 1.99984 2.81023 3.24502 3.26736 3.34184 3.37667 3.40639 3.60153 3.63021 3.69769 3.73234 3.77191 3.87328 3.95444 4.04698 4.12549 4.24307 4.26264 4.29131 4.35264 4.38746 4.48409 4.51073 4.52744 4.56289 4.65580 4.69992 4.84323 4.87394 4.88291 4.92656 4.95814 5.03697 5.06391 5.15423 5.18650 5.24115 5.26370 5.43182 5.46812 5.68359 5.77548 6.10659 6.38702 6.47672 6.82098 7.13982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.034 4.034 3 Si 0.668 3.332 4 C -0.174 4.174 5 C -0.099 4.099 6 C -0.118 4.118 7 C -0.146 4.146 8 C 0.015 3.985 9 C -0.121 4.121 10 C -0.048 4.048 11 C -0.137 4.137 12 C 0.564 3.436 13 O -0.531 6.531 14 N -0.709 5.709 15 C 0.122 3.878 16 H 0.108 0.892 17 C -0.137 4.137 18 C -0.124 4.124 19 H 0.105 0.895 20 C 0.143 3.857 21 N -0.370 5.370 22 C 0.052 3.948 23 C -0.275 4.275 24 C 0.044 3.956 25 N -0.297 5.297 26 C -0.146 4.146 27 C -0.077 4.077 28 C -0.109 4.109 29 S 0.112 5.888 30 H 0.385 0.615 31 H 0.085 0.915 32 H -0.238 1.238 33 H -0.235 1.235 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.129 0.871 37 H 0.142 0.858 38 H 0.401 0.599 39 H 0.080 0.920 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.172 0.828 44 H 0.147 0.853 45 H 0.182 0.818 46 H 0.093 0.907 47 H 0.072 0.928 48 H 0.130 0.870 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.338 -1.707 2.798 3.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.147 4.147 3 Si 0.567 3.433 4 C -0.291 4.291 5 C -0.129 4.129 6 C -0.148 4.148 7 C -0.262 4.262 8 C 0.013 3.987 9 C -0.140 4.140 10 C -0.066 4.066 11 C -0.141 4.141 12 C 0.352 3.648 13 O -0.408 6.408 14 N -0.361 5.361 15 C 0.017 3.983 16 H 0.126 0.874 17 C -0.176 4.176 18 C -0.143 4.143 19 H 0.123 0.877 20 C 0.021 3.979 21 N -0.152 5.152 22 C -0.094 4.094 23 C -0.305 4.305 24 C -0.142 4.142 25 N -0.119 5.119 26 C -0.185 4.185 27 C -0.096 4.096 28 C -0.129 4.129 29 S 0.379 5.621 30 H 0.233 0.767 31 H 0.103 0.897 32 H -0.162 1.162 33 H -0.158 1.158 34 H 0.166 0.834 35 H 0.165 0.835 36 H 0.147 0.853 37 H 0.160 0.840 38 H 0.237 0.763 39 H 0.099 0.901 40 H 0.120 0.880 41 H 0.105 0.895 42 H 0.116 0.884 43 H 0.189 0.811 44 H 0.164 0.836 45 H 0.199 0.801 46 H 0.112 0.888 47 H 0.091 0.909 48 H 0.148 0.852 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.949 0.456 2.470 3.179 hybrid contribution -1.339 -2.144 -0.607 2.599 sum 0.610 -1.688 1.863 2.587 Atomic orbital electron populations 1.86510 1.16760 1.81817 1.49843 1.23971 0.85882 1.09631 0.95247 0.94903 0.82002 0.78212 0.88213 1.23740 1.06629 0.97819 1.00902 1.19994 1.00748 0.94782 0.97399 1.20389 0.98586 1.00533 0.95303 1.23094 1.06115 0.97752 0.99278 1.18299 0.95142 0.94113 0.91175 1.20967 0.98095 0.98700 0.96222 1.20934 0.95966 0.96246 0.93501 1.19977 1.02205 0.95631 0.96259 1.18200 0.80205 0.82292 0.84145 1.90809 1.42140 1.42132 1.65767 1.45569 1.53438 1.13594 1.23519 1.21785 0.95768 0.97625 0.83160 0.87372 1.23356 0.96980 0.95683 1.01577 1.22979 0.99018 0.95331 0.96953 0.87727 1.21789 0.78045 1.01283 0.96748 1.48708 1.08776 1.49029 1.08717 1.22594 0.96416 1.01271 0.89097 1.21557 0.95454 1.13273 1.00190 1.23918 0.98294 0.99612 0.92386 1.77310 0.93828 1.20507 1.20207 1.23524 1.00928 0.95297 0.98744 1.20962 0.95300 0.98152 0.95138 1.20872 1.00260 0.96331 0.95416 1.84225 1.49089 1.13749 1.15008 0.76685 0.89718 1.16223 1.15847 0.83427 0.83461 0.85316 0.84037 0.76284 0.90136 0.88048 0.89499 0.88381 0.81062 0.83558 0.80095 0.88840 0.90875 0.85196 0.84695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.08 12.83 -35.23 -0.45 -0.38 16 2 C -0.03 0.01 2.95 36.01 0.11 0.12 16 3 Si 0.67 -0.64 30.96 -169.99 -5.26 -5.90 16 4 C -0.17 -0.38 5.76 -35.88 -0.21 -0.59 16 5 C -0.10 -0.16 10.00 -41.32 -0.41 -0.57 16 6 C -0.12 -0.15 9.64 -40.90 -0.39 -0.54 16 7 C -0.15 -0.33 6.37 -36.94 -0.24 -0.56 16 8 C 0.01 0.03 5.88 -104.91 -0.62 -0.59 16 9 C -0.12 -0.24 9.54 -39.59 -0.38 -0.62 16 10 C -0.05 -0.11 9.53 -39.59 -0.38 -0.49 16 11 C -0.14 -0.26 5.88 -104.90 -0.62 -0.88 16 12 C 0.56 1.67 7.76 -12.46 -0.10 1.57 16 13 O -0.53 -3.48 15.93 5.28 0.08 -3.39 16 14 N -0.71 0.00 5.22 -54.04 -0.28 -0.28 16 15 C 0.12 -0.07 4.32 -67.11 -0.29 -0.36 16 16 H 0.11 0.10 7.46 -51.94 -0.39 -0.29 16 17 C -0.14 0.40 7.39 -25.92 -0.19 0.21 16 18 C -0.12 0.23 3.75 -89.81 -0.34 -0.11 16 19 H 0.10 -0.03 7.96 -51.93 -0.41 -0.44 16 20 C 0.14 -0.27 6.35 -4.04 -0.03 -0.29 16 21 N -0.37 -0.40 3.68 -61.36 -0.23 -0.63 16 22 C 0.05 0.02 11.45 -17.23 -0.20 -0.18 16 23 C -0.28 -0.30 10.80 -40.01 -0.43 -0.73 16 24 C 0.04 0.09 12.03 -17.36 -0.21 -0.12 16 25 N -0.30 -0.97 12.26 30.63 0.38 -0.59 16 26 C -0.15 0.14 7.43 -25.92 -0.19 -0.06 16 27 C -0.08 0.01 9.48 -39.59 -0.38 -0.36 16 28 C -0.11 -0.02 9.48 -39.59 -0.38 -0.40 16 29 S 0.11 0.30 19.46 -107.50 -2.09 -1.79 16 30 H 0.39 -2.05 8.74 45.56 0.40 -1.65 16 31 H 0.09 -0.19 7.96 -51.93 -0.41 -0.60 16 32 H -0.24 -0.30 7.11 56.52 0.40 0.10 16 33 H -0.24 -0.53 7.11 56.52 0.40 -0.13 16 34 H 0.15 0.02 8.06 -52.48 -0.42 -0.40 16 35 H 0.15 -0.17 6.88 -52.48 -0.36 -0.53 16 36 H 0.13 0.14 7.26 -52.48 -0.38 -0.24 16 37 H 0.14 0.32 7.64 -52.49 -0.40 -0.08 16 38 H 0.40 -0.88 6.71 -40.82 -0.27 -1.15 16 39 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 40 H 0.10 -0.43 8.10 -51.93 -0.42 -0.85 16 41 H 0.09 -0.20 8.14 -51.93 -0.42 -0.62 16 42 H 0.10 -0.40 7.77 -51.93 -0.40 -0.80 16 43 H 0.17 -0.49 8.06 -52.49 -0.42 -0.91 16 44 H 0.15 -0.09 8.06 -52.48 -0.42 -0.52 16 45 H 0.18 -0.11 8.06 -52.49 -0.42 -0.53 16 46 H 0.09 -0.18 7.90 -51.93 -0.41 -0.59 16 47 H 0.07 0.09 8.14 -51.93 -0.42 -0.34 16 48 H 0.13 -0.39 6.38 -52.48 -0.33 -0.72 16 49 H 0.14 -0.26 6.74 -52.48 -0.35 -0.62 16 LS Contribution 424.50 15.07 6.40 6.40 Total: 0.00 -11.07 424.50 -13.62 -24.69 By element: Atomic # 1 Polarization: -6.27 SS G_CDS: -6.31 Total: -12.58 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -5.85 Total: -5.55 kcal Atomic # 7 Polarization: -1.37 SS G_CDS: -0.13 Total: -1.50 kcal Atomic # 8 Polarization: -3.40 SS G_CDS: -0.37 Total: -3.77 kcal Atomic # 14 Polarization: -0.64 SS G_CDS: -5.26 Total: -5.90 kcal Atomic # 16 Polarization: 0.30 SS G_CDS: -2.09 Total: -1.79 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -11.07 -13.62 -24.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_13308390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.393 kcal (2) G-P(sol) polarization free energy of solvation -11.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds