Wall clock time and date at job start Sun Mar 7 2021 04:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86296 * 109.47134 * 2 1 4 4 C 1.50703 * 109.47010 * 240.00505 * 2 1 3 5 5 C 1.33748 * 125.11703 * 299.99680 * 4 2 1 6 6 C 1.37793 * 115.08101 * 179.97438 * 5 4 2 7 7 C 1.34982 * 114.70252 * 0.02562 * 6 5 4 8 8 C 1.47559 * 125.27501 * 180.02562 * 7 6 5 9 9 C 1.39821 * 119.99743 * 179.97438 * 8 7 6 10 10 C 1.36565 * 120.00294 * 179.97438 * 9 8 7 11 11 C 1.39835 * 119.99354 * 0.02562 * 10 9 8 12 12 C 1.47557 * 119.99708 * 180.02562 * 11 10 9 13 13 O 1.21597 * 120.00271 * 0.02562 * 12 11 10 14 14 N 1.34781 * 119.99998 * 180.02562 * 12 11 10 15 15 C 1.46504 * 119.99737 * 180.02562 * 14 12 11 16 16 H 1.08988 * 112.85451 * 23.80670 * 15 14 12 17 17 C 1.53784 * 113.61052 * 155.00627 * 15 14 12 18 18 C 1.53778 * 87.08336 * 89.19610 * 17 15 14 19 19 H 1.08999 * 113.61566 * 270.79794 * 18 17 15 20 20 C 1.53000 * 113.61239 * 139.97850 * 18 17 15 21 21 N 1.46503 * 109.47420 * 174.99959 * 20 18 17 22 22 C 1.34940 * 126.03757 * 124.99460 * 21 20 18 23 23 C 1.35317 * 107.74438 * 179.77616 * 22 21 20 24 24 C 1.39872 * 107.92021 * 0.23195 * 23 22 21 25 25 N 1.30838 * 108.20312 * 359.97438 * 24 23 22 26 26 C 1.53778 * 87.08252 * 25.43444 * 18 17 15 27 27 C 1.39831 * 120.00042 * 0.28550 * 11 10 9 28 28 C 1.36564 * 119.99749 * 359.43711 * 27 11 10 29 29 S 1.75854 * 125.12152 * 120.27691 * 4 2 1 30 30 H 0.96702 * 113.99466 * 299.99781 * 1 2 3 31 31 H 1.08995 * 109.47456 * 120.00571 * 2 1 3 32 32 H 1.48499 * 110.00171 * 178.68859 * 3 2 1 33 33 H 1.48510 * 110.00062 * 300.00231 * 3 2 1 34 34 H 1.08008 * 122.45723 * 0.02562 * 5 4 2 35 35 H 1.08003 * 122.64853 * 180.02562 * 6 5 4 36 36 H 1.08005 * 119.99842 * 359.97438 * 9 8 7 37 37 H 1.07992 * 120.00174 * 179.97438 * 10 9 8 38 38 H 0.96997 * 119.99754 * 0.02562 * 14 12 11 39 39 H 1.09005 * 113.61430 * 334.64529 * 17 15 14 40 40 H 1.08999 * 113.61164 * 203.74744 * 17 15 14 41 41 H 1.09005 * 109.47317 * 55.00181 * 20 18 17 42 42 H 1.08999 * 109.47532 * 295.00483 * 20 18 17 43 43 H 1.08002 * 126.13053 * 0.04913 * 22 21 20 44 44 H 1.08003 * 126.04109 * 180.21059 * 23 22 21 45 45 H 1.08001 * 125.89461 * 180.02562 * 24 23 22 46 46 H 1.08997 * 113.61679 * 89.11485 * 26 18 17 47 47 H 1.09002 * 113.61284 * 220.02195 * 26 18 17 48 48 H 1.08003 * 119.99562 * 179.69575 * 27 11 10 49 49 H 1.08003 * 119.99682 * 180.25372 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7103 -1.2306 5 6 1.6721 -1.9847 -1.5430 6 6 2.2370 -2.4239 -2.7205 7 6 2.9666 -1.4968 -3.3765 8 6 3.6709 -1.7147 -4.6547 9 6 4.3969 -0.6725 -5.2393 10 6 5.0492 -0.8741 -6.4220 11 6 4.9905 -2.1228 -7.0486 12 6 5.6958 -2.3410 -8.3262 13 8 6.3283 -1.4350 -8.8340 14 7 5.6389 -3.5444 -8.9305 15 6 6.3396 -3.7611 -10.1987 16 1 7.1713 -3.0723 -10.3458 17 6 6.7050 -5.2323 -10.4569 18 6 5.3310 -5.3732 -11.1330 19 1 4.5330 -5.6543 -10.4458 20 6 5.3559 -6.2330 -12.3983 21 7 3.9898 -6.4051 -12.8988 22 6 3.5566 -6.1089 -14.1420 23 6 2.2402 -6.4160 -14.2041 24 6 1.8545 -6.9120 -12.9544 25 7 2.9019 -6.9035 -12.1704 26 6 5.4017 -3.8628 -11.4133 27 6 4.2591 -3.1632 -6.4672 28 6 3.6115 -2.9630 -5.2816 29 16 2.9522 0.0095 -2.4683 30 1 -0.3932 0.4417 0.7651 31 1 1.7924 -0.5139 0.8899 32 1 3.5346 1.7703 0.0319 33 1 1.5614 2.4679 -1.2085 34 1 1.0638 -2.6224 -0.9186 35 1 2.1065 -3.4306 -3.0895 36 1 4.4418 0.2921 -4.7554 37 1 5.6096 -0.0690 -6.8737 38 1 5.1340 -4.2669 -8.5256 39 1 6.8064 -5.8233 -9.5466 40 1 7.5436 -5.3602 -11.1414 41 1 5.7833 -7.2086 -12.1663 42 1 5.9626 -5.7423 -13.1593 43 1 4.1545 -5.7039 -14.9451 44 1 1.6003 -6.2985 -15.0662 45 1 0.8635 -7.2452 -12.6838 46 1 5.8840 -3.6163 -12.3592 47 1 4.4509 -3.3481 -11.2750 48 1 4.2098 -4.1261 -6.9537 49 1 3.0500 -3.7678 -4.8305 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_13308390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:35:32 Heat of formation + Delta-G solvation = 110.398285 kcal Electronic energy + Delta-G solvation = -31979.038214 eV Core-core repulsion = 27581.275215 eV Total energy + Delta-G solvation = -4397.762999 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 396.129 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.10112 -41.64584 -40.48015 -39.48693 -38.86914 -37.43098 -35.26199 -33.94854 -33.22965 -32.30166 -31.00287 -30.63484 -28.61860 -27.28623 -26.76553 -25.05106 -24.23567 -23.97235 -23.36067 -22.10354 -21.86909 -21.62011 -20.24050 -20.21109 -19.20747 -18.62101 -18.36507 -18.13262 -17.31588 -17.13624 -16.57878 -16.36863 -16.17861 -16.06400 -15.78137 -15.68699 -15.42327 -15.31748 -15.04701 -14.74192 -14.62956 -14.53022 -14.36577 -14.24735 -14.18424 -13.87390 -13.60270 -13.49111 -13.44590 -13.28746 -13.20198 -12.79953 -12.70576 -12.42195 -12.24830 -12.19285 -11.88280 -11.68194 -11.57982 -11.35909 -11.25081 -10.91618 -10.38725 -10.32869 -10.31740 -10.20482 -9.75008 -9.46976 -9.14821 -5.27938 -1.02081 0.11609 0.21059 0.29024 0.64655 1.00719 1.15037 1.42452 1.53002 1.67114 1.83801 1.86548 1.92456 1.95510 2.69980 3.26932 3.36483 3.37735 3.47633 3.50517 3.58385 3.59300 3.71106 3.77287 3.80308 3.96199 4.07072 4.08706 4.18771 4.20709 4.30943 4.38622 4.41335 4.44303 4.49977 4.51387 4.62631 4.68771 4.72143 4.77610 4.79659 4.89098 4.90964 4.94160 4.98531 5.02423 5.10422 5.11442 5.15829 5.16479 5.19803 5.36948 5.48511 5.60752 5.75867 6.18653 6.32660 6.78383 6.82659 7.00294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.036 4.036 3 Si 0.749 3.251 4 C -0.186 4.186 5 C -0.104 4.104 6 C -0.112 4.112 7 C -0.154 4.154 8 C 0.006 3.994 9 C -0.132 4.132 10 C -0.062 4.062 11 C -0.150 4.150 12 C 0.560 3.440 13 O -0.578 6.578 14 N -0.695 5.695 15 C 0.110 3.890 16 H 0.091 0.909 17 C -0.118 4.118 18 C -0.114 4.114 19 H 0.089 0.911 20 C 0.135 3.865 21 N -0.373 5.373 22 C 0.051 3.949 23 C -0.295 4.295 24 C 0.028 3.972 25 N -0.333 5.333 26 C -0.144 4.144 27 C -0.066 4.066 28 C -0.106 4.106 29 S 0.059 5.941 30 H 0.407 0.593 31 H 0.112 0.888 32 H -0.273 1.273 33 H -0.286 1.286 34 H 0.166 0.834 35 H 0.176 0.824 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.413 0.587 39 H 0.088 0.912 40 H 0.122 0.878 41 H 0.094 0.906 42 H 0.125 0.875 43 H 0.203 0.797 44 H 0.158 0.842 45 H 0.195 0.805 46 H 0.107 0.893 47 H 0.047 0.953 48 H 0.162 0.838 49 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.692 -4.176 3.061 5.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.149 4.149 3 Si 0.653 3.347 4 C -0.302 4.302 5 C -0.134 4.134 6 C -0.143 4.143 7 C -0.271 4.271 8 C 0.004 3.996 9 C -0.151 4.151 10 C -0.081 4.081 11 C -0.153 4.153 12 C 0.349 3.651 13 O -0.458 6.458 14 N -0.347 5.347 15 C 0.005 3.995 16 H 0.109 0.891 17 C -0.156 4.156 18 C -0.133 4.133 19 H 0.107 0.893 20 C 0.015 3.985 21 N -0.156 5.156 22 C -0.095 4.095 23 C -0.324 4.324 24 C -0.157 4.157 25 N -0.156 5.156 26 C -0.182 4.182 27 C -0.085 4.085 28 C -0.125 4.125 29 S 0.326 5.674 30 H 0.259 0.741 31 H 0.130 0.870 32 H -0.199 1.199 33 H -0.213 1.213 34 H 0.183 0.817 35 H 0.193 0.807 36 H 0.144 0.856 37 H 0.148 0.852 38 H 0.251 0.749 39 H 0.107 0.893 40 H 0.140 0.860 41 H 0.112 0.888 42 H 0.143 0.857 43 H 0.220 0.780 44 H 0.176 0.824 45 H 0.212 0.788 46 H 0.125 0.875 47 H 0.066 0.934 48 H 0.179 0.821 49 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.567 -2.057 2.772 3.791 hybrid contribution -1.246 -1.349 -0.733 1.977 sum 0.321 -3.406 2.039 3.982 Atomic orbital electron populations 1.86454 1.16551 1.82344 1.51647 1.24032 0.86155 1.09519 0.95185 0.94120 0.78739 0.76302 0.85499 1.24113 1.06513 0.98297 1.01323 1.20291 1.00645 0.94722 0.97696 1.20740 0.97300 1.01398 0.94827 1.23173 1.07016 0.97301 0.99581 1.18467 0.95110 0.94761 0.91270 1.20992 0.98667 0.99120 0.96283 1.20923 0.96550 0.96635 0.93954 1.20026 1.03031 0.96130 0.96141 1.18416 0.79733 0.82522 0.84397 1.90778 1.44336 1.43688 1.67036 1.45501 1.52776 1.12937 1.23475 1.21928 0.95498 0.99162 0.82961 0.89063 1.23312 0.96911 0.93281 1.02144 1.22817 0.99183 0.94351 0.96940 0.89292 1.22067 0.77138 1.01896 0.97363 1.48957 1.09207 1.48529 1.08885 1.23151 0.96605 1.00281 0.89492 1.21857 0.96305 1.13842 1.00405 1.24299 0.98855 0.99660 0.92846 1.77231 0.94838 1.21984 1.21507 1.23526 0.99598 0.95939 0.99153 1.21258 0.93749 0.98648 0.94808 1.21201 0.99912 0.96224 0.95200 1.84439 1.50537 1.15657 1.16797 0.74113 0.87023 1.19891 1.21287 0.81652 0.80717 0.85582 0.85162 0.74875 0.89334 0.85980 0.88814 0.85718 0.78019 0.82414 0.78787 0.87515 0.93365 0.82066 0.81859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.75 12.83 -148.98 -1.91 -1.17 16 2 C -0.04 0.04 2.95 71.24 0.21 0.25 16 3 Si 0.75 -0.71 30.96 68.60 2.12 1.42 16 4 C -0.19 -0.83 5.76 24.67 0.14 -0.68 16 5 C -0.10 -0.23 10.00 21.14 0.21 -0.02 16 6 C -0.11 -0.16 9.64 21.41 0.21 0.05 16 7 C -0.15 -0.77 6.37 23.98 0.15 -0.61 16 8 C 0.01 0.03 5.88 -20.05 -0.12 -0.09 16 9 C -0.13 -0.83 9.54 22.26 0.21 -0.62 16 10 C -0.06 -0.45 9.53 22.26 0.21 -0.24 16 11 C -0.15 -0.76 5.88 -20.05 -0.12 -0.87 16 12 C 0.56 4.20 7.76 86.70 0.67 4.87 16 13 O -0.58 -9.14 15.93 -4.02 -0.06 -9.20 16 14 N -0.70 -0.27 5.22 -443.15 -2.31 -2.58 16 15 C 0.11 -0.11 4.32 45.52 0.20 0.09 16 16 H 0.09 0.26 7.46 -2.39 -0.02 0.25 16 17 C -0.12 0.87 7.39 31.12 0.23 1.10 16 18 C -0.11 0.52 3.75 -10.27 -0.04 0.48 16 19 H 0.09 -0.08 7.96 -2.39 -0.02 -0.10 16 20 C 0.14 -0.72 6.35 86.38 0.55 -0.17 16 21 N -0.37 -0.55 3.68 -348.05 -1.28 -1.83 16 22 C 0.05 -0.02 11.45 83.54 0.96 0.94 16 23 C -0.29 -0.58 10.80 21.99 0.24 -0.34 16 24 C 0.03 0.12 12.03 85.24 1.03 1.15 16 25 N -0.33 -2.24 12.26 -57.02 -0.70 -2.94 16 26 C -0.14 0.26 7.43 31.12 0.23 0.49 16 27 C -0.07 0.07 9.48 22.26 0.21 0.28 16 28 C -0.11 0.07 9.48 22.26 0.21 0.28 16 29 S 0.06 0.43 19.46 -56.49 -1.10 -0.67 16 30 H 0.41 -4.93 8.74 -74.06 -0.65 -5.57 16 31 H 0.11 -0.70 7.96 -2.39 -0.02 -0.72 16 32 H -0.27 -1.22 7.11 99.48 0.71 -0.51 16 33 H -0.29 -2.09 7.11 99.48 0.71 -1.39 16 34 H 0.17 -0.28 8.06 -2.91 -0.02 -0.30 16 35 H 0.18 -0.86 6.88 -2.91 -0.02 -0.88 16 36 H 0.13 0.72 7.26 -2.91 -0.02 0.70 16 37 H 0.13 1.12 7.64 -2.91 -0.02 1.10 16 38 H 0.41 -2.05 6.71 -92.71 -0.62 -2.67 16 39 H 0.09 -0.73 8.14 -2.38 -0.02 -0.75 16 40 H 0.12 -1.34 8.10 -2.39 -0.02 -1.36 16 41 H 0.09 -0.59 8.14 -2.38 -0.02 -0.61 16 42 H 0.12 -1.34 7.77 -2.39 -0.02 -1.36 16 43 H 0.20 -1.58 8.06 -2.91 -0.02 -1.60 16 44 H 0.16 -0.24 8.06 -2.91 -0.02 -0.27 16 45 H 0.20 -0.11 8.06 -2.91 -0.02 -0.14 16 46 H 0.11 -0.49 7.90 -2.39 -0.02 -0.51 16 47 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 48 H 0.16 -1.29 6.38 -2.91 -0.02 -1.31 16 49 H 0.16 -1.09 6.74 -2.91 -0.02 -1.11 16 Total: 0.00 -29.73 424.50 0.13 -29.60 By element: Atomic # 1 Polarization: -18.73 SS G_CDS: -0.22 Total: -18.95 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 5.59 Total: 6.32 kcal Atomic # 7 Polarization: -3.06 SS G_CDS: -4.29 Total: -7.35 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -1.98 Total: -10.37 kcal Atomic # 14 Polarization: -0.71 SS G_CDS: 2.12 Total: 1.42 kcal Atomic # 16 Polarization: 0.43 SS G_CDS: -1.10 Total: -0.67 kcal Total: -29.73 0.13 -29.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_13308390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.998 kcal (2) G-P(sol) polarization free energy of solvation -29.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds