Wall clock time and date at job start Sun Mar 7 2021 04:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86298 * 109.47605 * 2 1 4 4 C 1.50699 * 109.47249 * 239.99737 * 2 1 3 5 5 C 1.38053 * 119.80725 * 300.00041 * 4 2 1 6 6 C 1.38710 * 120.08619 * 180.02562 * 5 4 2 7 7 O 1.35652 * 120.14943 * 180.02562 * 6 5 4 8 8 C 1.40136 * 119.69885 * 359.97438 * 6 5 4 9 9 C 1.47538 * 120.19079 * 180.02562 * 8 6 5 10 10 O 1.21590 * 120.00225 * 0.02562 * 9 8 6 11 11 N 1.34781 * 120.00125 * 179.97438 * 9 8 6 12 12 C 1.46500 * 120.00191 * 180.02562 * 11 9 8 13 13 H 1.08998 * 112.84717 * 23.80665 * 12 11 9 14 14 C 1.53777 * 113.61267 * 155.00375 * 12 11 9 15 15 C 1.53783 * 87.08135 * 89.11796 * 14 12 11 16 16 H 1.09003 * 113.60813 * 270.88191 * 15 14 12 17 17 C 1.52999 * 113.61364 * 140.06564 * 15 14 12 18 18 N 1.46500 * 109.46945 * 174.99916 * 17 15 14 19 19 C 1.34945 * 126.03713 * 125.00141 * 18 17 15 20 20 C 1.35317 * 107.74405 * 179.97438 * 19 18 17 21 21 C 1.39864 * 107.92256 * 359.97438 * 20 19 18 22 22 N 1.30839 * 108.20143 * 359.74264 * 21 20 19 23 23 C 1.53775 * 87.08062 * 25.42868 * 15 14 12 24 24 C 1.39705 * 119.62077 * 0.02562 * 8 6 5 25 25 C 1.37792 * 119.90559 * 359.74539 * 24 8 6 26 26 H 0.96703 * 114.00176 * 60.00012 * 1 2 3 27 27 H 1.09004 * 109.47449 * 120.00278 * 2 1 3 28 28 H 1.48506 * 109.99834 * 298.68369 * 3 2 1 29 29 H 1.48502 * 110.00011 * 59.99633 * 3 2 1 30 30 H 1.07999 * 119.95707 * 0.02562 * 5 4 2 31 31 H 0.96689 * 114.00743 * 90.00151 * 7 6 5 32 32 H 0.96998 * 119.99686 * 0.02562 * 11 9 8 33 33 H 1.09001 * 113.61124 * 203.66836 * 14 12 11 34 34 H 1.09001 * 113.61546 * 334.56180 * 14 12 11 35 35 H 1.09000 * 109.47119 * 294.99628 * 17 15 14 36 36 H 1.09001 * 109.47006 * 54.99446 * 17 15 14 37 37 H 1.07996 * 126.12565 * 359.97438 * 19 18 17 38 38 H 1.07997 * 126.03809 * 179.97438 * 20 19 18 39 39 H 1.07997 * 125.89915 * 179.97438 * 21 20 19 40 40 H 1.09003 * 113.61853 * 220.02023 * 23 15 14 41 41 H 1.09002 * 113.61522 * 89.11875 * 23 15 14 42 42 H 1.08002 * 120.05044 * 179.97438 * 24 8 6 43 43 H 1.07993 * 119.85268 * 180.24954 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.5954 -2.0322 -1.4449 6 6 2.0550 -2.6919 -2.5752 7 8 1.7253 -3.9905 -2.7874 8 6 2.8606 -2.0104 -3.4973 9 6 3.3551 -2.7014 -4.7035 10 8 3.0633 -3.8653 -4.9000 11 7 4.1293 -2.0422 -5.5882 12 6 4.6197 -2.7281 -6.7861 13 1 3.9984 -3.5767 -7.0722 14 6 4.9398 -1.7782 -7.9522 15 6 6.3588 -1.6679 -7.3696 16 1 6.4692 -0.8676 -6.6378 17 6 7.4587 -1.6566 -8.4330 18 7 8.7560 -1.4297 -7.7912 19 6 9.8455 -2.2182 -7.9024 20 6 10.8329 -1.6641 -7.1614 21 6 10.3298 -0.4968 -6.5779 22 7 9.0867 -0.3521 -6.9594 23 6 6.1226 -3.0505 -6.7395 24 6 3.1930 -0.6730 -3.2680 25 6 2.7237 -0.0319 -2.1422 26 1 -0.3934 0.4417 -0.7651 27 1 1.7923 -0.5139 0.8900 28 1 1.5879 2.4585 -1.2243 29 1 1.5615 2.4679 1.2085 30 1 0.9739 -2.5532 -0.7317 31 1 0.9089 -4.1118 -3.2911 32 1 4.3617 -1.1136 -5.4316 33 1 4.9053 -2.2595 -8.9296 34 1 4.3805 -0.8431 -7.9199 35 1 7.4727 -2.6153 -8.9515 36 1 7.2632 -0.8588 -9.1495 37 1 9.9165 -3.1283 -8.4794 38 1 11.8328 -2.0543 -7.0417 39 1 10.8746 0.1719 -5.9279 40 1 6.5182 -3.1428 -5.7279 41 1 6.4115 -3.8798 -7.3852 42 1 3.8138 -0.1413 -3.9739 43 1 2.9778 1.0032 -1.9678 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_13422076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:35:37 Heat of formation + Delta-G solvation = 33.127032 kcal Electronic energy + Delta-G solvation = -27317.983344 eV Core-core repulsion = 23333.014974 eV Total energy + Delta-G solvation = -3984.968370 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.08324 -41.74737 -40.65462 -39.28008 -38.43546 -37.26219 -35.10535 -33.70451 -32.43859 -31.14559 -30.95060 -28.66110 -27.43168 -26.73379 -24.53104 -23.93516 -23.41422 -22.03180 -21.77133 -21.59232 -20.20071 -19.46116 -18.83253 -18.31121 -18.11643 -17.37005 -16.88932 -16.49626 -16.33189 -16.31470 -16.09022 -15.83208 -15.60053 -15.36624 -15.23430 -14.83342 -14.58119 -14.44031 -14.21459 -13.83069 -13.76194 -13.54474 -13.45640 -13.25091 -12.99621 -12.75203 -12.40959 -12.22505 -12.17457 -11.68770 -11.61342 -11.55215 -11.32234 -11.02013 -10.68615 -10.31553 -10.24511 -10.03232 -9.81989 -9.44403 -4.91241 -0.45851 0.11061 1.03259 1.25838 1.60166 1.65191 1.69947 1.96539 1.98111 1.98405 2.52935 3.06780 3.37144 3.39095 3.44074 3.51023 3.54143 3.65000 3.72979 3.82122 3.98773 4.04605 4.11114 4.22598 4.24066 4.39354 4.42806 4.53434 4.60583 4.66384 4.70460 4.73008 4.75605 4.81184 4.93551 4.97041 4.99447 5.05236 5.11215 5.16408 5.19279 5.20460 5.53619 5.56525 5.78838 6.20915 6.40237 6.44516 6.67660 6.81093 7.10325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.092 4.092 3 Si 0.775 3.225 4 C -0.069 4.069 5 C -0.139 4.139 6 C 0.153 3.847 7 O -0.498 6.498 8 C -0.181 4.181 9 C 0.558 3.442 10 O -0.562 6.562 11 N -0.698 5.698 12 C 0.113 3.887 13 H 0.090 0.910 14 C -0.118 4.118 15 C -0.113 4.113 16 H 0.090 0.910 17 C 0.135 3.865 18 N -0.374 5.374 19 C 0.051 3.949 20 C -0.295 4.295 21 C 0.029 3.971 22 N -0.332 5.332 23 C -0.145 4.145 24 C -0.055 4.055 25 C -0.131 4.131 26 H 0.388 0.612 27 H 0.127 0.873 28 H -0.271 1.271 29 H -0.305 1.305 30 H 0.136 0.864 31 H 0.407 0.593 32 H 0.412 0.588 33 H 0.120 0.880 34 H 0.089 0.911 35 H 0.123 0.877 36 H 0.093 0.907 37 H 0.202 0.798 38 H 0.158 0.842 39 H 0.196 0.804 40 H 0.047 0.953 41 H 0.104 0.896 42 H 0.164 0.836 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.466 3.887 -4.227 6.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.200 4.200 3 Si 0.679 3.321 4 C -0.070 4.070 5 C -0.157 4.157 6 C 0.107 3.893 7 O -0.311 6.311 8 C -0.184 4.184 9 C 0.346 3.654 10 O -0.441 6.441 11 N -0.350 5.350 12 C 0.007 3.993 13 H 0.108 0.892 14 C -0.157 4.157 15 C -0.132 4.132 16 H 0.108 0.892 17 C 0.015 3.985 18 N -0.157 5.157 19 C -0.096 4.096 20 C -0.324 4.324 21 C -0.156 4.156 22 N -0.154 5.154 23 C -0.183 4.183 24 C -0.073 4.073 25 C -0.148 4.148 26 H 0.238 0.762 27 H 0.144 0.856 28 H -0.196 1.196 29 H -0.233 1.233 30 H 0.154 0.846 31 H 0.267 0.733 32 H 0.250 0.750 33 H 0.138 0.862 34 H 0.107 0.893 35 H 0.141 0.859 36 H 0.112 0.888 37 H 0.219 0.781 38 H 0.176 0.824 39 H 0.213 0.787 40 H 0.066 0.934 41 H 0.122 0.878 42 H 0.181 0.819 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.446 4.139 -3.551 5.641 hybrid contribution -0.661 -0.579 -0.377 0.956 sum 0.785 3.560 -3.927 5.358 Atomic orbital electron populations 1.86599 1.18165 1.80469 1.50271 1.25441 0.83765 1.12586 0.98224 0.93942 0.90141 0.71050 0.76963 1.20506 0.96274 0.93657 0.96566 1.21339 1.01688 0.94688 0.98017 1.18744 0.94391 0.83462 0.92701 1.84713 1.48278 1.20643 1.77420 1.20442 1.05527 0.95995 0.96480 1.18319 0.78179 0.85891 0.82990 1.90804 1.58982 1.17690 1.76648 1.45502 1.51188 1.15911 1.22443 1.21875 0.94953 0.96901 0.85534 0.89191 1.23307 0.93831 1.00336 0.98190 1.22812 0.94403 0.98006 0.97964 0.89173 1.22057 0.77507 1.04577 0.94331 1.48960 1.11296 1.17802 1.37594 1.23140 0.87052 0.98439 1.00953 1.21856 1.02501 1.00220 1.07855 1.24304 0.92382 0.98598 1.00291 1.77228 1.16928 1.09236 1.12053 1.23521 0.95741 0.97887 1.01169 1.21458 0.96881 0.91449 0.97510 1.21233 0.98402 1.01258 0.93929 0.76225 0.85571 1.19646 1.23349 0.84632 0.73310 0.75006 0.86154 0.89286 0.85856 0.88847 0.78121 0.82442 0.78683 0.93417 0.87751 0.81907 0.82031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.36 12.76 -148.98 -1.90 -2.26 16 2 C -0.09 0.24 2.81 71.24 0.20 0.44 16 3 Si 0.78 -3.87 29.77 68.60 2.04 -1.83 16 4 C -0.07 0.12 5.39 -19.83 -0.11 0.01 16 5 C -0.14 -0.33 9.53 22.34 0.21 -0.12 16 6 C 0.15 0.84 6.72 22.84 0.15 0.99 16 7 O -0.50 -4.14 11.58 -68.76 -0.80 -4.94 16 8 C -0.18 -0.56 5.89 -20.01 -0.12 -0.68 16 9 C 0.56 3.43 7.76 86.70 0.67 4.11 16 10 O -0.56 -8.10 14.76 16.92 0.25 -7.85 16 11 N -0.70 0.61 5.21 -443.20 -2.31 -1.70 16 12 C 0.11 -0.21 4.32 45.52 0.20 -0.02 16 13 H 0.09 0.19 7.46 -2.39 -0.02 0.17 16 14 C -0.12 0.97 7.39 31.12 0.23 1.20 16 15 C -0.11 0.60 3.74 -10.27 -0.04 0.56 16 16 H 0.09 -0.17 7.97 -2.39 -0.02 -0.19 16 17 C 0.14 -0.78 6.35 86.38 0.55 -0.24 16 18 N -0.37 -0.34 3.68 -348.07 -1.28 -1.62 16 19 C 0.05 -0.04 11.45 83.54 0.96 0.92 16 20 C -0.30 -0.41 10.80 21.99 0.24 -0.18 16 21 C 0.03 0.10 12.03 85.23 1.02 1.13 16 22 N -0.33 -1.96 12.28 -57.03 -0.70 -2.66 16 23 C -0.14 0.34 7.43 31.12 0.23 0.57 16 24 C -0.05 0.21 9.54 22.52 0.21 0.43 16 25 C -0.13 0.64 8.65 22.24 0.19 0.84 16 26 H 0.39 -2.13 8.70 -74.06 -0.64 -2.78 16 27 H 0.13 -0.43 7.96 -2.38 -0.02 -0.45 16 28 H -0.27 0.73 7.11 99.48 0.71 1.43 16 29 H -0.31 -1.12 7.11 99.48 0.71 -0.41 16 30 H 0.14 0.36 8.06 -2.91 -0.02 0.34 16 31 H 0.41 0.51 9.06 -74.06 -0.67 -0.16 16 32 H 0.41 -2.62 6.73 -92.71 -0.62 -3.24 16 33 H 0.12 -1.39 8.10 -2.39 -0.02 -1.41 16 34 H 0.09 -0.82 8.14 -2.39 -0.02 -0.84 16 35 H 0.12 -1.36 7.78 -2.39 -0.02 -1.38 16 36 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 37 H 0.20 -1.63 8.06 -2.91 -0.02 -1.66 16 38 H 0.16 -0.32 8.06 -2.91 -0.02 -0.35 16 39 H 0.20 -0.30 8.06 -2.91 -0.02 -0.32 16 40 H 0.05 0.15 8.14 -2.39 -0.02 0.13 16 41 H 0.10 -0.50 7.90 -2.39 -0.02 -0.52 16 42 H 0.16 -1.72 6.40 -2.91 -0.02 -1.74 16 43 H 0.16 -1.66 4.85 -2.91 -0.01 -1.68 16 Total: 0.00 -27.88 363.62 -0.71 -28.59 By element: Atomic # 1 Polarization: -14.88 SS G_CDS: -0.82 Total: -15.70 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 4.81 Total: 9.96 kcal Atomic # 7 Polarization: -1.69 SS G_CDS: -4.29 Total: -5.98 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -2.45 Total: -15.04 kcal Atomic # 14 Polarization: -3.87 SS G_CDS: 2.04 Total: -1.83 kcal Total: -27.88 -0.71 -28.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_13422076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.716 kcal (2) G-P(sol) polarization free energy of solvation -27.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds