Wall clock time and date at job start Sun Mar 7 2021 04:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37791 * 119.84639 * 2 1 4 4 C 1.39704 * 119.90541 * 180.25574 * 3 2 1 5 5 C 1.47544 * 120.19022 * 179.78975 * 4 3 2 6 6 O 1.21586 * 119.99894 * 179.72059 * 5 4 3 7 7 N 1.34776 * 119.99842 * 359.72716 * 5 4 3 8 8 C 1.46506 * 119.99955 * 180.02562 * 7 5 4 9 9 H 1.08998 * 112.84797 * 23.79888 * 8 7 5 10 10 C 1.53774 * 113.61271 * 154.99574 * 8 7 5 11 11 C 1.53784 * 87.07996 * 89.11665 * 10 8 7 12 12 H 1.09006 * 113.61085 * 270.79240 * 11 10 8 13 13 C 1.53003 * 113.61593 * 139.98234 * 11 10 8 14 14 N 1.46502 * 109.47267 * 174.99846 * 13 11 10 15 15 C 1.34948 * 126.03993 * 124.99155 * 14 13 11 16 16 C 1.35315 * 107.74520 * 179.97438 * 15 14 13 17 17 C 1.39870 * 107.92205 * 0.02562 * 16 15 14 18 18 N 1.30839 * 108.19862 * 359.97438 * 17 16 15 19 19 C 1.53772 * 87.08248 * 25.42806 * 11 10 8 20 20 C 1.40131 * 119.62234 * 359.51645 * 4 3 2 21 21 O 1.35648 * 120.15656 * 180.27250 * 20 4 3 22 22 C 1.38712 * 119.69562 * 0.25223 * 20 4 3 23 23 C 1.50702 * 119.95863 * 180.02562 * 22 20 4 24 24 O 1.42905 * 109.46669 * 284.99565 * 23 22 20 25 25 Si 1.86297 * 109.47187 * 164.99935 * 23 22 20 26 26 C 1.38055 * 120.08470 * 359.97438 * 22 20 4 27 27 H 1.08999 * 109.47062 * 270.22613 * 1 2 3 28 28 H 1.08992 * 109.47940 * 30.23225 * 1 2 3 29 29 H 1.09009 * 109.46894 * 150.23648 * 1 2 3 30 30 H 1.08005 * 120.04661 * 0.04899 * 3 2 1 31 31 H 0.96996 * 120.00161 * 359.97438 * 7 5 4 32 32 H 1.08995 * 113.62260 * 334.56474 * 10 8 7 33 33 H 1.08997 * 113.68772 * 203.66847 * 10 8 7 34 34 H 1.08994 * 109.47234 * 54.99610 * 13 11 10 35 35 H 1.09001 * 109.46792 * 294.99158 * 13 11 10 36 36 H 1.08007 * 126.12251 * 0.27272 * 15 14 13 37 37 H 1.08001 * 126.03475 * 179.97438 * 16 15 14 38 38 H 1.07997 * 125.89701 * 180.02562 * 17 16 15 39 39 H 1.09000 * 113.61338 * 89.12118 * 19 11 10 40 40 H 1.09003 * 113.61572 * 220.01905 * 19 11 10 41 41 H 0.96707 * 113.99703 * 89.99753 * 21 20 4 42 42 H 1.08996 * 109.46949 * 44.99589 * 23 22 20 43 43 H 0.96702 * 113.99555 * 179.97438 * 24 23 22 44 44 H 1.48495 * 109.99980 * 298.67950 * 25 23 22 45 45 H 1.48504 * 110.00091 * 60.00155 * 25 23 22 46 46 H 1.07994 * 119.80505 * 179.97438 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1927 1.1951 0.0000 4 6 3.5897 1.1966 -0.0054 5 6 4.3304 2.4727 -0.0101 6 8 5.5462 2.4699 -0.0097 7 7 3.6591 3.6414 -0.0148 8 6 4.3945 4.9085 -0.0200 9 1 5.4018 4.8116 -0.4251 10 6 3.5992 6.0797 -0.6202 11 6 3.0602 6.3371 0.7969 12 1 2.1473 5.7861 1.0235 13 6 2.9626 7.8213 1.1554 14 7 2.3311 7.9658 2.4694 15 6 2.8450 8.6246 3.5291 16 6 1.9578 8.5259 4.5460 17 6 0.8644 7.7808 4.0924 18 7 1.0871 7.4447 2.8476 19 6 4.3372 5.6594 1.3207 20 6 4.2837 -0.0208 -0.0005 21 8 5.6401 -0.0321 -0.0001 22 6 3.5771 -1.2145 0.0043 23 6 4.3174 -2.5272 0.0102 24 8 4.8554 -2.7763 -1.2901 25 14 3.1445 -3.8995 0.4703 26 6 2.1966 -1.2016 0.0049 27 1 -0.3633 0.0041 1.0277 28 1 -0.3635 0.8878 -0.5174 29 1 -0.3633 -0.8922 -0.5102 30 1 1.6510 2.1295 0.0008 31 1 2.6892 3.6436 -0.0154 32 1 2.8321 5.7689 -1.3294 33 1 4.2266 6.8853 -1.0016 34 1 2.3633 8.3376 0.4055 35 1 3.9623 8.2548 1.1832 36 1 3.7924 9.1424 3.5586 37 1 2.0738 8.9473 5.5336 38 1 -0.0125 7.5274 4.6696 39 1 5.1676 6.3493 1.4706 40 1 4.1660 5.0090 2.1786 41 1 6.0332 -0.0319 0.8835 42 1 5.1286 -2.4836 0.7369 43 1 5.3465 -3.6064 -1.3600 44 1 2.6024 -3.6687 1.8333 45 1 2.0338 -3.9694 -0.5130 46 1 1.6511 -2.1336 0.0082 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_13422088.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:35:41 Heat of formation + Delta-G solvation = 30.212253 kcal Electronic energy + Delta-G solvation = -29641.395081 eV Core-core repulsion = 25500.762698 eV Total energy + Delta-G solvation = -4140.632383 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.14876 -41.88807 -40.80442 -39.29571 -38.19030 -37.59953 -35.19216 -33.83259 -33.27877 -32.55669 -30.98707 -28.60807 -27.69711 -26.87268 -26.79143 -25.63880 -23.99183 -22.07976 -21.96893 -21.74781 -21.59535 -20.25773 -19.63386 -18.59265 -18.47781 -18.10408 -17.75470 -16.93032 -16.91028 -16.44873 -16.15802 -15.99105 -15.75553 -15.42670 -15.32353 -15.00761 -14.94610 -14.62025 -14.57850 -14.32531 -14.28979 -13.87782 -13.78935 -13.57628 -13.49494 -13.17521 -13.05879 -12.87197 -12.76076 -12.52739 -12.25926 -12.07328 -11.86003 -11.68256 -11.59052 -11.37405 -11.05204 -10.43188 -10.32895 -10.31051 -10.13912 -9.67879 -9.48111 -4.98410 -0.54677 -0.09910 0.99738 1.22341 1.52042 1.61769 1.65874 1.87006 1.90933 1.94601 2.38015 2.98748 3.24871 3.33876 3.38944 3.46100 3.50559 3.51525 3.74555 3.79130 3.91403 3.94754 4.00609 4.07858 4.16826 4.18713 4.35431 4.38347 4.45944 4.49268 4.61227 4.61647 4.67621 4.68230 4.70330 4.75591 4.80040 4.89771 4.92112 4.98882 5.02720 5.03172 5.10445 5.15488 5.20723 5.45999 5.49334 5.74876 6.17516 6.30733 6.60956 6.77408 6.86460 7.01025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.097 4.097 3 C -0.062 4.062 4 C -0.179 4.179 5 C 0.561 3.439 6 O -0.557 6.557 7 N -0.698 5.698 8 C 0.112 3.888 9 H 0.090 0.910 10 C -0.120 4.120 11 C -0.113 4.113 12 H 0.088 0.912 13 C 0.136 3.864 14 N -0.374 5.374 15 C 0.052 3.948 16 C -0.294 4.294 17 C 0.029 3.971 18 N -0.334 5.334 19 C -0.141 4.141 20 C 0.169 3.831 21 O -0.483 6.483 22 C -0.125 4.125 23 C -0.081 4.081 24 O -0.563 6.563 25 Si 0.783 3.217 26 C -0.095 4.095 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.160 0.840 31 H 0.410 0.590 32 H 0.085 0.915 33 H 0.122 0.878 34 H 0.093 0.907 35 H 0.126 0.874 36 H 0.203 0.797 37 H 0.159 0.841 38 H 0.196 0.804 39 H 0.107 0.893 40 H 0.049 0.951 41 H 0.403 0.597 42 H 0.084 0.916 43 H 0.401 0.599 44 H -0.282 1.282 45 H -0.284 1.284 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.651 0.272 2.058 2.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.097 4.097 3 C -0.080 4.080 4 C -0.182 4.182 5 C 0.349 3.651 6 O -0.436 6.436 7 N -0.350 5.350 8 C 0.006 3.994 9 H 0.108 0.892 10 C -0.159 4.159 11 C -0.132 4.132 12 H 0.106 0.894 13 C 0.016 3.984 14 N -0.156 5.156 15 C -0.095 4.095 16 C -0.324 4.324 17 C -0.157 4.157 18 N -0.157 5.157 19 C -0.179 4.179 20 C 0.122 3.878 21 O -0.295 6.295 22 C -0.125 4.125 23 C -0.190 4.190 24 O -0.373 6.373 25 Si 0.687 3.313 26 C -0.113 4.113 27 H 0.105 0.895 28 H 0.108 0.892 29 H 0.091 0.909 30 H 0.178 0.822 31 H 0.248 0.752 32 H 0.104 0.896 33 H 0.141 0.859 34 H 0.111 0.889 35 H 0.144 0.856 36 H 0.220 0.780 37 H 0.176 0.824 38 H 0.212 0.788 39 H 0.126 0.874 40 H 0.068 0.932 41 H 0.263 0.737 42 H 0.102 0.898 43 H 0.252 0.748 44 H -0.209 1.209 45 H -0.212 1.212 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.290 0.031 0.384 2.322 hybrid contribution 0.200 0.905 1.362 1.648 sum -2.090 0.936 1.746 2.880 Atomic orbital electron populations 1.20920 0.88017 1.04479 1.03937 1.20109 0.98238 0.91727 0.99659 1.21393 0.91292 0.99477 0.95846 1.20473 0.94922 0.92930 1.09908 1.18175 0.86905 0.84112 0.75925 1.90798 1.14584 1.87791 1.50381 1.45503 1.10567 1.04499 1.74479 1.21906 0.96964 0.82573 0.97930 0.89160 1.23319 0.99920 0.97197 0.95423 1.22804 0.98271 0.94890 0.97252 0.89412 1.22056 0.99144 0.97208 0.80014 1.48957 1.14156 1.40759 1.11776 1.23160 1.01093 0.97847 0.87363 1.21858 0.96757 1.11386 1.02360 1.24304 1.00682 0.97986 0.92679 1.77232 0.99460 1.23068 1.15901 1.23505 0.98479 0.99341 0.96595 1.18449 0.83871 0.90425 0.95009 1.84757 1.14646 1.95979 1.34106 1.20047 0.93887 0.94609 1.04001 1.24890 1.04662 1.00073 0.89333 1.86494 1.74955 1.47036 1.28818 0.94027 0.77387 0.83724 0.76139 1.21245 0.92956 0.99020 0.98076 0.89503 0.89249 0.90874 0.82238 0.75213 0.89622 0.85948 0.88906 0.85646 0.77975 0.82352 0.78765 0.87426 0.93242 0.73730 0.89790 0.74795 1.20918 1.21161 0.84834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.42 10.00 71.24 0.71 1.13 16 2 C -0.10 -0.20 5.87 -19.90 -0.12 -0.32 16 3 C -0.06 -0.11 9.18 22.52 0.21 0.09 16 4 C -0.18 -1.36 5.89 -20.01 -0.12 -1.48 16 5 C 0.56 5.13 7.76 86.70 0.67 5.81 16 6 O -0.56 -9.20 14.76 16.93 0.25 -8.95 16 7 N -0.70 -1.29 5.21 -443.20 -2.31 -3.60 16 8 C 0.11 -0.01 4.32 45.51 0.20 0.19 16 9 H 0.09 0.36 7.46 -2.39 -0.02 0.34 16 10 C -0.12 0.76 7.39 31.12 0.23 0.99 16 11 C -0.11 0.46 3.74 -10.27 -0.04 0.42 16 12 H 0.09 -0.02 7.96 -2.38 -0.02 -0.04 16 13 C 0.14 -0.68 6.35 86.38 0.55 -0.13 16 14 N -0.37 -0.58 3.68 -348.05 -1.28 -1.86 16 15 C 0.05 -0.03 11.45 83.54 0.96 0.93 16 16 C -0.29 -0.51 10.80 21.99 0.24 -0.27 16 17 C 0.03 0.12 12.03 85.24 1.03 1.14 16 18 N -0.33 -2.26 12.27 -57.02 -0.70 -2.96 16 19 C -0.14 0.24 7.43 31.12 0.23 0.47 16 20 C 0.17 1.67 6.69 22.84 0.15 1.83 16 21 O -0.48 -5.33 10.91 -68.71 -0.75 -6.08 16 22 C -0.12 -0.91 5.30 -19.79 -0.10 -1.02 16 23 C -0.08 -0.19 2.37 71.24 0.17 -0.02 16 24 O -0.56 -2.46 12.86 -148.98 -1.92 -4.37 16 25 Si 0.78 -1.54 30.19 68.60 2.07 0.53 16 26 C -0.10 -0.49 8.30 22.30 0.19 -0.31 16 27 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 28 H 0.09 -0.58 8.08 -2.39 -0.02 -0.59 16 29 H 0.07 -0.27 8.08 -2.38 -0.02 -0.29 16 30 H 0.16 -0.78 6.40 -2.91 -0.02 -0.80 16 31 H 0.41 -1.25 6.73 -92.71 -0.62 -1.87 16 32 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 33 H 0.12 -1.23 8.10 -2.39 -0.02 -1.25 16 34 H 0.09 -0.54 8.14 -2.39 -0.02 -0.56 16 35 H 0.13 -1.32 7.77 -2.39 -0.02 -1.34 16 36 H 0.20 -1.63 8.06 -2.91 -0.02 -1.65 16 37 H 0.16 -0.29 8.06 -2.91 -0.02 -0.32 16 38 H 0.20 -0.15 8.06 -2.91 -0.02 -0.17 16 39 H 0.11 -0.50 7.90 -2.39 -0.02 -0.52 16 40 H 0.05 0.16 8.14 -2.39 -0.02 0.14 16 41 H 0.40 1.42 9.06 -74.05 -0.67 0.75 16 42 H 0.08 -0.07 7.83 -2.39 -0.02 -0.09 16 43 H 0.40 -2.65 8.74 -74.06 -0.65 -3.30 16 44 H -0.28 -0.75 7.11 99.48 0.71 -0.04 16 45 H -0.28 -1.05 6.75 99.48 0.67 -0.38 16 46 H 0.13 0.46 4.87 -2.91 -0.01 0.45 16 Total: 0.00 -30.08 384.33 -0.38 -30.46 By element: Atomic # 1 Polarization: -11.71 SS G_CDS: -0.90 Total: -12.61 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 5.15 Total: 9.45 kcal Atomic # 7 Polarization: -4.13 SS G_CDS: -4.29 Total: -8.42 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -2.41 Total: -19.40 kcal Atomic # 14 Polarization: -1.54 SS G_CDS: 2.07 Total: 0.53 kcal Total: -30.08 -0.38 -30.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_13422088.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.672 kcal (2) G-P(sol) polarization free energy of solvation -30.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds