Wall clock time and date at job start Sun Mar 7 2021 04:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86310 * 109.47169 * 2 1 4 4 C 1.50700 * 109.47379 * 240.00250 * 2 1 3 5 5 C 1.32695 * 124.68143 * 300.33949 * 4 2 1 6 6 C 1.44507 * 113.09582 * 180.16252 * 5 4 2 7 7 C 1.47051 * 123.49026 * 179.77144 * 6 5 4 8 8 O 1.21652 * 120.00081 * 179.72792 * 7 6 5 9 9 N 1.34781 * 120.00030 * 359.72053 * 7 6 5 10 10 C 1.46499 * 119.99818 * 180.02562 * 9 7 6 11 11 H 1.08997 * 112.85076 * 23.80653 * 10 9 7 12 12 C 1.53786 * 113.60983 * 155.00428 * 10 9 7 13 13 C 1.53788 * 87.07824 * 89.11717 * 12 10 9 14 14 H 1.09001 * 113.61007 * 270.79437 * 13 12 10 15 15 C 1.52999 * 113.60981 * 139.98108 * 13 12 10 16 16 N 1.46501 * 109.46864 * 174.99719 * 15 13 12 17 17 C 1.34953 * 126.03725 * 125.00110 * 16 15 13 18 18 C 1.35312 * 107.74266 * 180.20624 * 17 16 15 19 19 C 1.39863 * 107.92527 * 359.64076 * 18 17 16 20 20 N 1.30837 * 108.19940 * 0.36269 * 19 18 17 21 21 C 1.53777 * 87.08183 * 25.43045 * 13 12 10 22 22 C 1.36220 * 113.01562 * 359.49514 * 6 5 4 23 23 Cl 1.73601 * 124.60358 * 180.26500 * 22 6 5 24 24 S 1.70442 * 110.79199 * 0.27228 * 22 6 5 25 25 H 0.96695 * 114.00499 * 300.00252 * 1 2 3 26 26 H 1.09004 * 109.47419 * 119.99477 * 2 1 3 27 27 H 1.48500 * 109.99758 * 299.99903 * 3 2 1 28 28 H 1.48503 * 109.99615 * 61.31511 * 3 2 1 29 29 H 1.08002 * 123.45146 * 359.94945 * 5 4 2 30 30 H 0.96996 * 119.99632 * 0.02562 * 9 7 6 31 31 H 1.08997 * 113.61449 * 334.56646 * 12 10 9 32 32 H 1.09002 * 113.60808 * 203.66576 * 12 10 9 33 33 H 1.08998 * 109.47551 * 55.00082 * 15 13 12 34 34 H 1.09002 * 109.47429 * 294.99577 * 15 13 12 35 35 H 1.08002 * 126.12372 * 359.93597 * 17 16 15 36 36 H 1.08008 * 126.03698 * 179.76435 * 18 17 16 37 37 H 1.08001 * 125.90034 * 180.14354 * 19 18 17 38 38 H 1.09004 * 113.61449 * 89.11469 * 21 13 12 39 39 H 1.09000 * 113.61252 * 220.01845 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 1.6634 -1.9737 -1.5353 6 6 2.2766 -2.4007 -2.7721 7 6 2.1338 -3.7567 -3.3228 8 8 2.6744 -4.0467 -4.3733 9 7 1.4040 -4.6784 -2.6635 10 6 1.2622 -6.0295 -3.2119 11 1 2.0754 -6.3005 -3.8851 12 6 0.9616 -7.0978 -2.1474 13 6 -0.5283 -6.7918 -2.3742 14 1 -0.9126 -5.9960 -1.7361 15 6 -1.4170 -8.0372 -2.3712 16 7 -2.8219 -7.6348 -2.4740 17 6 -3.7031 -8.0584 -3.4043 18 6 -4.8873 -7.4522 -3.1569 19 6 -4.7265 -6.6364 -2.0322 20 7 -3.4881 -6.7428 -1.6239 21 6 -0.1357 -6.3186 -3.7837 22 6 2.9957 -1.4152 -3.3781 23 17 3.8491 -1.5980 -4.8788 24 16 2.9440 0.0216 -2.4628 25 1 -0.3934 0.4417 0.7650 26 1 1.7923 -0.5138 0.8900 27 1 1.5614 2.4679 -1.2085 28 1 1.5877 2.4586 1.2242 29 1 1.0526 -2.6179 -0.9201 30 1 0.9728 -4.4471 -1.8261 31 1 1.3151 -6.8329 -1.1509 32 1 1.2509 -8.1054 -2.4462 33 1 -1.2645 -8.5903 -1.4444 34 1 -1.1576 -8.6709 -3.2193 35 1 -3.4984 -8.7531 -4.2055 36 1 -5.7966 -7.5779 -3.7260 37 1 -5.4916 -6.0219 -1.5811 38 1 -0.1465 -7.1132 -4.5298 39 1 -0.6682 -5.4246 -4.1082 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688104_13431040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:35:56 Heat of formation + Delta-G solvation = 78.923176 kcal Electronic energy + Delta-G solvation = -25813.438476 eV Core-core repulsion = 21878.490622 eV Total energy + Delta-G solvation = -3934.947854 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.059 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.06663 -41.32819 -39.84521 -38.73302 -37.85129 -37.08811 -35.00712 -33.37394 -31.80773 -30.94891 -28.71123 -26.96882 -26.85944 -26.01272 -23.95759 -22.19143 -21.95295 -21.57956 -20.80369 -20.17160 -19.30011 -18.70077 -18.24736 -17.77325 -17.13701 -16.57380 -16.43303 -16.21430 -15.89794 -15.66034 -15.42143 -15.09885 -14.71413 -14.50556 -14.39035 -14.32087 -14.25210 -14.08915 -13.86221 -13.59685 -13.54550 -13.09998 -12.84501 -12.57025 -12.43370 -12.29618 -12.07762 -11.94515 -11.69076 -11.53791 -11.39959 -10.86188 -10.68022 -10.26879 -10.10480 -9.83077 -9.65024 -9.43788 -5.24168 -0.56450 -0.18656 0.45551 0.71305 1.03323 1.03809 1.12103 1.40299 1.60581 1.75389 2.02018 2.12324 2.28042 3.02513 3.29136 3.38255 3.41413 3.44074 3.69922 3.87150 3.89828 3.90686 3.97476 4.08089 4.13943 4.31995 4.37809 4.38611 4.54819 4.57138 4.67679 4.71413 4.76818 4.90054 4.92824 4.93640 4.97195 5.09513 5.17358 5.53118 5.79611 6.12955 6.20215 6.44587 6.84368 7.21367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.531 6.531 2 C -0.033 4.033 3 Si 0.643 3.357 4 C -0.189 4.189 5 C -0.071 4.071 6 C -0.159 4.159 7 C 0.580 3.420 8 O -0.516 6.516 9 N -0.707 5.707 10 C 0.125 3.875 11 H 0.109 0.891 12 C -0.137 4.137 13 C -0.124 4.124 14 H 0.104 0.896 15 C 0.143 3.857 16 N -0.370 5.370 17 C 0.052 3.948 18 C -0.276 4.276 19 C 0.044 3.956 20 N -0.296 5.296 21 C -0.146 4.146 22 C -0.116 4.116 23 Cl 0.027 6.973 24 S 0.247 5.753 25 H 0.385 0.615 26 H 0.092 0.908 27 H -0.232 1.232 28 H -0.233 1.233 29 H 0.156 0.844 30 H 0.401 0.599 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.172 0.828 36 H 0.146 0.854 37 H 0.182 0.818 38 H 0.093 0.907 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.802 -0.492 4.277 4.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.339 6.339 2 C -0.145 4.145 3 Si 0.541 3.459 4 C -0.306 4.306 5 C -0.100 4.100 6 C -0.178 4.178 7 C 0.366 3.634 8 O -0.392 6.392 9 N -0.359 5.359 10 C 0.019 3.981 11 H 0.127 0.873 12 C -0.176 4.176 13 C -0.143 4.143 14 H 0.123 0.877 15 C 0.021 3.979 16 N -0.152 5.152 17 C -0.094 4.094 18 C -0.305 4.305 19 C -0.142 4.142 20 N -0.118 5.118 21 C -0.185 4.185 22 C -0.262 4.262 23 Cl 0.056 6.944 24 S 0.512 5.488 25 H 0.234 0.766 26 H 0.109 0.891 27 H -0.155 1.155 28 H -0.156 1.156 29 H 0.173 0.827 30 H 0.236 0.764 31 H 0.098 0.902 32 H 0.119 0.881 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.189 0.811 36 H 0.164 0.836 37 H 0.199 0.801 38 H 0.111 0.889 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.799 1.578 3.491 4.745 hybrid contribution -2.631 -1.834 0.328 3.224 sum 0.168 -0.257 3.819 3.831 Atomic orbital electron populations 1.86599 1.17063 1.80080 1.50156 1.24005 0.84768 1.10039 0.95725 0.95345 0.91560 0.75316 0.83704 1.23516 1.07338 0.98049 1.01719 1.20960 0.99050 0.95284 0.94753 1.20157 1.04729 0.95389 0.97534 1.17380 0.78518 0.83455 0.84054 1.90874 1.46666 1.79910 1.21786 1.45473 1.52865 1.11160 1.26414 1.21760 0.98473 0.81427 0.96414 0.87322 1.23355 0.94431 0.99760 1.00031 1.22978 0.94427 0.97966 0.98894 0.87737 1.21792 0.75463 0.96737 1.03873 1.48715 1.09553 1.34565 1.22391 1.22592 0.90512 1.00833 0.95442 1.21552 0.99419 1.06288 1.03247 1.23910 0.94446 0.99617 0.96259 1.77310 1.07186 1.11227 1.16081 1.23524 0.96638 1.02233 0.96126 1.25517 1.03143 1.00855 0.96735 1.98438 1.73310 1.97054 1.25588 1.83290 1.46316 1.08236 1.10990 0.76573 0.89078 1.15522 1.15628 0.82701 0.76380 0.90151 0.88098 0.89537 0.88397 0.81068 0.83577 0.80121 0.88904 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.35 12.82 -35.23 -0.45 -0.10 16 2 C -0.03 0.06 2.94 36.01 0.11 0.17 16 3 Si 0.64 -1.36 30.91 -169.99 -5.25 -6.62 16 4 C -0.19 0.02 5.72 -36.20 -0.21 -0.19 16 5 C -0.07 -0.02 9.71 -39.00 -0.38 -0.39 16 6 C -0.16 -0.36 5.98 -104.58 -0.63 -0.99 16 7 C 0.58 1.90 7.79 -12.69 -0.10 1.80 16 8 O -0.52 -3.31 14.51 5.23 0.08 -3.23 16 9 N -0.71 -0.21 5.24 -54.21 -0.28 -0.49 16 10 C 0.12 -0.06 4.32 -67.12 -0.29 -0.35 16 11 H 0.11 0.10 7.46 -51.93 -0.39 -0.29 16 12 C -0.14 0.39 7.39 -25.91 -0.19 0.20 16 13 C -0.12 0.20 3.74 -89.81 -0.34 -0.14 16 14 H 0.10 0.01 7.96 -51.93 -0.41 -0.40 16 15 C 0.14 -0.24 6.35 -4.04 -0.03 -0.26 16 16 N -0.37 -0.49 3.68 -61.36 -0.23 -0.72 16 17 C 0.05 0.03 11.45 -17.22 -0.20 -0.17 16 18 C -0.28 -0.36 10.80 -40.02 -0.43 -0.79 16 19 C 0.04 0.10 12.03 -17.37 -0.21 -0.11 16 20 N -0.30 -1.05 12.27 30.62 0.38 -0.67 16 21 C -0.15 0.10 7.43 -25.92 -0.19 -0.09 16 22 C -0.12 -0.30 6.87 30.01 0.21 -0.09 16 23 Cl 0.03 0.10 27.20 -51.86 -1.41 -1.31 16 24 S 0.25 0.04 20.17 -107.50 -2.17 -2.13 16 25 H 0.39 -1.79 8.74 45.56 0.40 -1.40 16 26 H 0.09 -0.36 7.96 -51.93 -0.41 -0.78 16 27 H -0.23 -0.20 7.11 56.52 0.40 0.21 16 28 H -0.23 0.17 7.11 56.52 0.40 0.57 16 29 H 0.16 -0.27 7.10 -52.49 -0.37 -0.65 16 30 H 0.40 -0.67 7.24 -40.82 -0.30 -0.96 16 31 H 0.08 -0.24 8.14 -51.93 -0.42 -0.67 16 32 H 0.10 -0.42 8.10 -51.93 -0.42 -0.84 16 33 H 0.09 -0.18 8.14 -51.93 -0.42 -0.60 16 34 H 0.10 -0.38 7.77 -51.93 -0.40 -0.78 16 35 H 0.17 -0.46 8.06 -52.49 -0.42 -0.88 16 36 H 0.15 -0.07 8.06 -52.48 -0.42 -0.49 16 37 H 0.18 -0.07 8.06 -52.49 -0.42 -0.49 16 38 H 0.09 -0.16 7.90 -51.93 -0.41 -0.57 16 39 H 0.07 0.12 8.14 -51.93 -0.42 -0.31 16 LS Contribution 362.35 15.07 5.46 5.46 Total: 0.00 -9.34 362.35 -11.21 -20.54 By element: Atomic # 1 Polarization: -4.86 SS G_CDS: -4.45 Total: -9.31 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -2.87 Total: -1.42 kcal Atomic # 7 Polarization: -1.75 SS G_CDS: -0.13 Total: -1.88 kcal Atomic # 8 Polarization: -2.96 SS G_CDS: -0.38 Total: -3.33 kcal Atomic # 14 Polarization: -1.36 SS G_CDS: -5.25 Total: -6.62 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -2.17 Total: -2.13 kcal Atomic # 17 Polarization: 0.10 SS G_CDS: -1.41 Total: -1.31 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -9.34 -11.21 -20.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_13431040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.467 kcal (2) G-P(sol) polarization free energy of solvation -9.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds