Wall clock time and date at job start Sun Mar 7 2021 04:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86310 * 109.47169 * 2 1 4 4 C 1.50700 * 109.47379 * 240.00250 * 2 1 3 5 5 C 1.32695 * 124.68143 * 300.33949 * 4 2 1 6 6 C 1.44507 * 113.09582 * 180.16252 * 5 4 2 7 7 C 1.47051 * 123.49026 * 179.77144 * 6 5 4 8 8 O 1.21652 * 120.00081 * 179.72792 * 7 6 5 9 9 N 1.34781 * 120.00030 * 359.72053 * 7 6 5 10 10 C 1.46499 * 119.99818 * 180.02562 * 9 7 6 11 11 H 1.08997 * 112.85076 * 23.80653 * 10 9 7 12 12 C 1.53786 * 113.60983 * 155.00428 * 10 9 7 13 13 C 1.53788 * 87.07824 * 89.11717 * 12 10 9 14 14 H 1.09001 * 113.61007 * 270.79437 * 13 12 10 15 15 C 1.52999 * 113.60981 * 139.98108 * 13 12 10 16 16 N 1.46501 * 109.46864 * 174.99719 * 15 13 12 17 17 C 1.34953 * 126.03725 * 125.00110 * 16 15 13 18 18 C 1.35312 * 107.74266 * 180.20624 * 17 16 15 19 19 C 1.39863 * 107.92527 * 359.64076 * 18 17 16 20 20 N 1.30837 * 108.19940 * 0.36269 * 19 18 17 21 21 C 1.53777 * 87.08183 * 25.43045 * 13 12 10 22 22 C 1.36220 * 113.01562 * 359.49514 * 6 5 4 23 23 Cl 1.73601 * 124.60358 * 180.26500 * 22 6 5 24 24 S 1.70442 * 110.79199 * 0.27228 * 22 6 5 25 25 H 0.96695 * 114.00499 * 300.00252 * 1 2 3 26 26 H 1.09004 * 109.47419 * 119.99477 * 2 1 3 27 27 H 1.48500 * 109.99758 * 299.99903 * 3 2 1 28 28 H 1.48503 * 109.99615 * 61.31511 * 3 2 1 29 29 H 1.08002 * 123.45146 * 359.94945 * 5 4 2 30 30 H 0.96996 * 119.99632 * 0.02562 * 9 7 6 31 31 H 1.08997 * 113.61449 * 334.56646 * 12 10 9 32 32 H 1.09002 * 113.60808 * 203.66576 * 12 10 9 33 33 H 1.08998 * 109.47551 * 55.00082 * 15 13 12 34 34 H 1.09002 * 109.47429 * 294.99577 * 15 13 12 35 35 H 1.08002 * 126.12372 * 359.93597 * 17 16 15 36 36 H 1.08008 * 126.03698 * 179.76435 * 18 17 16 37 37 H 1.08001 * 125.90034 * 180.14354 * 19 18 17 38 38 H 1.09004 * 113.61449 * 89.11469 * 21 13 12 39 39 H 1.09000 * 113.61252 * 220.01845 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 1.6634 -1.9737 -1.5353 6 6 2.2766 -2.4007 -2.7721 7 6 2.1338 -3.7567 -3.3228 8 8 2.6744 -4.0467 -4.3733 9 7 1.4040 -4.6784 -2.6635 10 6 1.2622 -6.0295 -3.2119 11 1 2.0754 -6.3005 -3.8851 12 6 0.9616 -7.0978 -2.1474 13 6 -0.5283 -6.7918 -2.3742 14 1 -0.9126 -5.9960 -1.7361 15 6 -1.4170 -8.0372 -2.3712 16 7 -2.8219 -7.6348 -2.4740 17 6 -3.7031 -8.0584 -3.4043 18 6 -4.8873 -7.4522 -3.1569 19 6 -4.7265 -6.6364 -2.0322 20 7 -3.4881 -6.7428 -1.6239 21 6 -0.1357 -6.3186 -3.7837 22 6 2.9957 -1.4152 -3.3781 23 17 3.8491 -1.5980 -4.8788 24 16 2.9440 0.0216 -2.4628 25 1 -0.3934 0.4417 0.7650 26 1 1.7923 -0.5138 0.8900 27 1 1.5614 2.4679 -1.2085 28 1 1.5877 2.4586 1.2242 29 1 1.0526 -2.6179 -0.9201 30 1 0.9728 -4.4471 -1.8261 31 1 1.3151 -6.8329 -1.1509 32 1 1.2509 -8.1054 -2.4462 33 1 -1.2645 -8.5903 -1.4444 34 1 -1.1576 -8.6709 -3.2193 35 1 -3.4984 -8.7531 -4.2055 36 1 -5.7966 -7.5779 -3.7260 37 1 -5.4916 -6.0219 -1.5811 38 1 -0.1465 -7.1132 -4.5298 39 1 -0.6682 -5.4246 -4.1082 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_13431040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:35:55 Heat of formation + Delta-G solvation = 79.565408 kcal Electronic energy + Delta-G solvation = -25813.410627 eV Core-core repulsion = 21878.490622 eV Total energy + Delta-G solvation = -3934.920005 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.059 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.08155 -41.41860 -39.85800 -38.73754 -38.00026 -37.13064 -35.06628 -33.41680 -31.82634 -30.98533 -28.69594 -26.95349 -26.74903 -26.05527 -23.94214 -22.22483 -21.97781 -21.59587 -20.85472 -20.15629 -19.35416 -18.59212 -18.22853 -17.79952 -17.20851 -16.58061 -16.41275 -16.22450 -15.98164 -15.61490 -15.43792 -15.14599 -14.74208 -14.57510 -14.45290 -14.35712 -14.26051 -14.03615 -13.81702 -13.53685 -13.46327 -13.08949 -12.77528 -12.61599 -12.50205 -12.22830 -12.11572 -12.07175 -11.65557 -11.57093 -11.33892 -11.01423 -10.63611 -10.32966 -10.20610 -9.88249 -9.69130 -9.46936 -5.08854 -0.67613 -0.24420 0.42625 0.66767 0.99295 1.00787 1.15789 1.51139 1.67561 1.87075 1.95354 2.06051 2.11513 3.15961 3.39376 3.49357 3.50532 3.53188 3.77713 3.82109 3.88784 3.97657 4.08723 4.21434 4.31237 4.40320 4.41916 4.52299 4.66073 4.69123 4.72845 4.75344 4.82052 4.90845 4.92368 4.96812 5.05156 5.14647 5.16840 5.53417 5.75655 6.19011 6.37259 6.53269 6.78414 7.06896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.035 4.035 3 Si 0.702 3.298 4 C -0.190 4.190 5 C -0.073 4.073 6 C -0.169 4.169 7 C 0.574 3.426 8 O -0.556 6.556 9 N -0.695 5.695 10 C 0.114 3.886 11 H 0.094 0.906 12 C -0.117 4.117 13 C -0.114 4.114 14 H 0.086 0.914 15 C 0.136 3.864 16 N -0.374 5.374 17 C 0.052 3.948 18 C -0.295 4.295 19 C 0.028 3.972 20 N -0.334 5.334 21 C -0.144 4.144 22 C -0.139 4.139 23 Cl 0.007 6.993 24 S 0.269 5.731 25 H 0.402 0.598 26 H 0.123 0.877 27 H -0.276 1.276 28 H -0.248 1.248 29 H 0.175 0.825 30 H 0.411 0.589 31 H 0.087 0.913 32 H 0.123 0.877 33 H 0.094 0.906 34 H 0.125 0.875 35 H 0.204 0.796 36 H 0.159 0.841 37 H 0.195 0.805 38 H 0.107 0.893 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.636 -1.513 5.604 5.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.147 4.147 3 Si 0.604 3.396 4 C -0.307 4.307 5 C -0.101 4.101 6 C -0.188 4.188 7 C 0.360 3.640 8 O -0.435 6.435 9 N -0.347 5.347 10 C 0.009 3.991 11 H 0.112 0.888 12 C -0.156 4.156 13 C -0.133 4.133 14 H 0.104 0.896 15 C 0.016 3.984 16 N -0.156 5.156 17 C -0.095 4.095 18 C -0.324 4.324 19 C -0.157 4.157 20 N -0.156 5.156 21 C -0.182 4.182 22 C -0.286 4.286 23 Cl 0.036 6.964 24 S 0.535 5.465 25 H 0.254 0.746 26 H 0.140 0.860 27 H -0.203 1.203 28 H -0.172 1.172 29 H 0.192 0.808 30 H 0.248 0.752 31 H 0.106 0.894 32 H 0.141 0.859 33 H 0.112 0.888 34 H 0.143 0.857 35 H 0.220 0.780 36 H 0.176 0.824 37 H 0.212 0.788 38 H 0.125 0.875 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.620 0.552 4.875 5.562 hybrid contribution -2.639 -1.457 -0.073 3.015 sum -0.018 -0.905 4.802 4.887 Atomic orbital electron populations 1.86554 1.17546 1.80524 1.51595 1.24158 0.84498 1.10118 0.95919 0.94656 0.90555 0.73978 0.80441 1.23828 1.06803 0.98051 1.02032 1.21088 0.99166 0.95751 0.94136 1.20302 1.05125 0.94979 0.98423 1.17640 0.78407 0.84183 0.83750 1.90845 1.48543 1.80654 1.23505 1.45431 1.51750 1.11129 1.26353 1.21892 0.98052 0.81659 0.97525 0.88816 1.23308 0.92928 0.99820 0.99520 1.22808 0.95258 0.97639 0.97607 0.89588 1.22073 0.74040 0.96821 1.05512 1.48970 1.10499 1.34049 1.22086 1.23158 0.90103 1.00622 0.95598 1.21857 1.00506 1.06651 1.03425 1.24291 0.94586 1.00028 0.96789 1.77232 1.07963 1.12803 1.17647 1.23524 0.96036 1.01570 0.97120 1.25776 1.03870 1.02289 0.96617 1.98420 1.73810 1.97258 1.26928 1.83193 1.45936 1.06930 1.10464 0.74615 0.85955 1.20282 1.17167 0.80781 0.75193 0.89400 0.85927 0.88829 0.85660 0.77955 0.82381 0.78832 0.87509 0.93627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.37 12.82 -148.98 -1.91 -0.54 16 2 C -0.04 0.18 2.94 71.24 0.21 0.39 16 3 Si 0.70 -3.33 30.91 68.60 2.12 -1.21 16 4 C -0.19 0.13 5.72 24.51 0.14 0.27 16 5 C -0.07 -0.02 9.71 22.70 0.22 0.20 16 6 C -0.17 -0.94 5.98 -19.84 -0.12 -1.06 16 7 C 0.57 4.62 7.79 86.55 0.67 5.29 16 8 O -0.56 -8.38 14.51 -4.19 -0.06 -8.44 16 9 N -0.70 -0.94 5.24 -443.64 -2.33 -3.26 16 10 C 0.11 -0.07 4.32 45.52 0.20 0.13 16 11 H 0.09 0.27 7.46 -2.39 -0.02 0.25 16 12 C -0.12 0.81 7.39 31.12 0.23 1.04 16 13 C -0.11 0.43 3.74 -10.27 -0.04 0.39 16 14 H 0.09 0.05 7.96 -2.39 -0.02 0.03 16 15 C 0.14 -0.63 6.35 86.38 0.55 -0.08 16 16 N -0.37 -0.82 3.68 -348.06 -1.28 -2.10 16 17 C 0.05 0.01 11.45 83.54 0.96 0.97 16 18 C -0.30 -0.75 10.80 21.99 0.24 -0.51 16 19 C 0.03 0.14 12.03 85.23 1.02 1.17 16 20 N -0.33 -2.54 12.27 -57.03 -0.70 -3.24 16 21 C -0.14 0.15 7.43 31.12 0.23 0.39 16 22 C -0.14 -0.90 6.87 67.35 0.46 -0.44 16 23 Cl 0.01 0.07 27.20 -2.72 -0.07 -0.01 16 24 S 0.27 0.21 20.17 -56.49 -1.14 -0.93 16 25 H 0.40 -4.27 8.74 -74.06 -0.65 -4.91 16 26 H 0.12 -1.31 7.96 -2.38 -0.02 -1.32 16 27 H -0.28 -0.74 7.11 99.48 0.71 -0.04 16 28 H -0.25 0.55 7.11 99.48 0.71 1.26 16 29 H 0.17 -0.78 7.10 -2.91 -0.02 -0.80 16 30 H 0.41 -1.29 7.24 -92.71 -0.67 -1.96 16 31 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 32 H 0.12 -1.31 8.10 -2.39 -0.02 -1.33 16 33 H 0.09 -0.54 8.14 -2.39 -0.02 -0.56 16 34 H 0.13 -1.29 7.77 -2.39 -0.02 -1.30 16 35 H 0.20 -1.50 8.06 -2.91 -0.02 -1.53 16 36 H 0.16 -0.17 8.06 -2.91 -0.02 -0.19 16 37 H 0.19 0.03 8.06 -2.91 -0.02 0.01 16 38 H 0.11 -0.43 7.90 -2.38 -0.02 -0.45 16 39 H 0.04 0.22 8.14 -2.39 -0.02 0.20 16 Total: 0.00 -24.37 362.35 -0.56 -24.93 By element: Atomic # 1 Polarization: -13.18 SS G_CDS: -0.17 Total: -13.34 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: 4.97 Total: 8.14 kcal Atomic # 7 Polarization: -4.29 SS G_CDS: -4.31 Total: -8.60 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -1.97 Total: -8.98 kcal Atomic # 14 Polarization: -3.33 SS G_CDS: 2.12 Total: -1.21 kcal Atomic # 16 Polarization: 0.21 SS G_CDS: -1.14 Total: -0.93 kcal Atomic # 17 Polarization: 0.07 SS G_CDS: -0.07 Total: -0.01 kcal Total: -24.37 -0.56 -24.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_13431040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.498 kcal (2) G-P(sol) polarization free energy of solvation -24.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds