Wall clock time and date at job start Sun Mar 7 2021 04:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86294 * 109.47073 * 2 1 4 4 C 1.50696 * 109.46847 * 240.00069 * 2 1 3 5 5 C 1.34177 * 125.43743 * 299.99231 * 4 2 1 6 6 C 1.47029 * 105.95271 * 179.75629 * 5 4 2 7 7 C 1.47375 * 127.19001 * 180.26328 * 6 5 4 8 8 O 1.21613 * 120.00281 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99854 * 180.02562 * 7 6 5 10 10 C 1.46504 * 120.00035 * 179.97438 * 9 7 6 11 11 H 1.09001 * 112.84806 * 25.33400 * 10 9 7 12 12 C 1.53782 * 113.61384 * 156.53003 * 10 9 7 13 13 C 1.53778 * 87.08315 * 89.11613 * 12 10 9 14 14 H 1.09000 * 113.61470 * 270.88394 * 13 12 10 15 15 C 1.52997 * 113.61594 * 140.06343 * 13 12 10 16 16 N 1.46505 * 109.47173 * 175.00274 * 15 13 12 17 17 C 1.34942 * 126.03625 * 125.00104 * 16 15 13 18 18 C 1.35322 * 107.74639 * 179.97438 * 17 16 15 19 19 C 1.39868 * 107.91961 * 359.97438 * 18 17 16 20 20 N 1.30841 * 108.19832 * 359.74510 * 19 18 17 21 21 C 1.53779 * 113.61405 * 254.13684 * 10 9 7 22 22 C 1.36414 * 105.61423 * 0.23221 * 6 5 4 23 23 O 1.33657 * 108.40072 * 359.97438 * 22 6 5 24 24 H 0.96702 * 114.00029 * 60.00211 * 1 2 3 25 25 H 1.09005 * 109.46962 * 120.00095 * 2 1 3 26 26 H 1.48501 * 109.99987 * 59.99755 * 3 2 1 27 27 H 1.48499 * 110.00086 * 181.31878 * 3 2 1 28 28 H 1.08002 * 127.02646 * 0.02836 * 5 4 2 29 29 H 0.97004 * 120.00099 * 0.02562 * 9 7 6 30 30 H 1.08994 * 113.61608 * 203.66870 * 12 10 9 31 31 H 1.09003 * 113.61236 * 334.48573 * 12 10 9 32 32 H 1.09005 * 109.47100 * 294.99898 * 15 13 12 33 33 H 1.08993 * 109.46947 * 55.00231 * 15 13 12 34 34 H 1.08008 * 126.13109 * 359.97438 * 17 16 15 35 35 H 1.07994 * 126.03929 * 180.02562 * 18 17 16 36 36 H 1.07995 * 125.90038 * 179.97438 * 19 18 17 37 37 H 1.09000 * 113.61431 * 25.43651 * 21 10 9 38 38 H 1.09005 * 113.61476 * 156.33780 * 21 10 9 39 39 H 1.08002 * 125.80114 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6753 -1.9882 -1.5500 6 6 2.3635 -2.2311 -2.8264 7 6 2.3861 -3.4841 -3.6019 8 8 1.7884 -4.4620 -3.1949 9 7 3.0691 -3.5464 -4.7621 10 6 3.0920 -4.7921 -5.5327 11 1 2.2243 -5.4237 -5.3421 12 6 3.3876 -4.5863 -7.0278 13 6 4.8776 -4.7174 -6.6707 14 1 5.3487 -3.7701 -6.4084 15 6 5.6848 -5.5192 -7.6936 16 7 7.1036 -5.4868 -7.3299 17 6 7.8990 -6.5600 -7.1393 18 6 9.1331 -6.1070 -6.8184 19 6 9.0905 -4.7090 -6.8133 20 7 7.8758 -4.3361 -7.1254 21 6 4.4311 -5.5435 -5.4494 22 6 2.9762 -1.0542 -3.1431 23 8 2.7080 -0.1666 -2.1804 24 1 -0.3933 0.4417 -0.7651 25 1 1.7924 -0.5139 0.8900 26 1 1.5614 2.4678 1.2085 27 1 3.5346 1.7703 -0.0321 28 1 1.0812 -2.6929 -0.9872 29 1 3.5461 -2.7665 -5.0865 30 1 3.0178 -5.3926 -7.6611 31 1 3.1107 -3.5982 -7.3956 32 1 5.3357 -6.5518 -7.7030 33 1 5.5533 -5.0821 -8.6833 34 1 7.6037 -7.5952 -7.2272 35 1 9.9982 -6.7171 -6.6049 36 1 9.9181 -4.0510 -6.5935 37 1 4.9974 -5.3273 -4.5435 38 1 4.3461 -6.6112 -5.6520 39 1 3.5754 -0.8705 -4.0227 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688104_13456056.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:36:00 Heat of formation + Delta-G solvation = 65.338701 kcal Electronic energy + Delta-G solvation = -23784.279095 eV Core-core repulsion = 20084.471287 eV Total energy + Delta-G solvation = -3699.807808 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.74789 -42.09701 -41.16255 -39.30702 -38.06914 -35.13279 -34.08118 -33.31877 -31.73821 -30.97535 -28.67571 -26.92657 -26.76965 -25.39533 -23.90891 -22.30127 -22.03317 -21.63522 -21.15512 -20.26811 -19.37665 -18.27581 -17.84164 -17.53688 -17.42684 -17.06108 -16.52533 -16.24434 -15.96466 -15.72565 -15.54355 -15.45790 -14.78205 -14.56756 -14.31418 -14.20936 -13.99707 -13.98022 -13.68690 -13.62276 -13.55784 -12.91718 -12.88480 -12.36945 -12.15697 -11.77990 -11.58926 -11.45401 -11.09334 -10.90436 -10.69147 -10.31475 -10.16973 -9.82772 -9.47803 -5.09058 0.19548 0.86795 0.99705 1.10648 1.43085 1.56225 1.75365 1.88620 1.96120 1.98097 2.29872 3.16788 3.22062 3.32172 3.35759 3.38843 3.54551 3.64499 3.84305 3.88852 3.93882 4.02785 4.21832 4.27245 4.32545 4.33900 4.49550 4.50693 4.55955 4.63105 4.69708 4.76195 4.86173 4.86602 4.91391 5.02086 5.13727 5.19942 5.45152 5.75700 5.80064 6.08825 6.35435 6.37664 6.80143 7.15510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.529 6.529 2 C -0.029 4.029 3 Si 0.707 3.293 4 C -0.058 4.058 5 C -0.123 4.123 6 C -0.238 4.238 7 C 0.591 3.409 8 O -0.529 6.529 9 N -0.711 5.711 10 C 0.124 3.876 11 H 0.108 0.892 12 C -0.136 4.136 13 C -0.123 4.123 14 H 0.104 0.896 15 C 0.142 3.858 16 N -0.370 5.370 17 C 0.053 3.947 18 C -0.275 4.275 19 C 0.044 3.956 20 N -0.297 5.297 21 C -0.147 4.147 22 C 0.033 3.967 23 O -0.165 6.165 24 H 0.384 0.616 25 H 0.133 0.867 26 H -0.247 1.247 27 H -0.253 1.253 28 H 0.162 0.838 29 H 0.399 0.601 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.172 0.828 35 H 0.147 0.853 36 H 0.182 0.818 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.668 1.677 -4.504 4.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.335 6.335 2 C -0.139 4.139 3 Si 0.606 3.394 4 C -0.106 4.106 5 C -0.143 4.143 6 C -0.243 4.243 7 C 0.379 3.621 8 O -0.405 6.405 9 N -0.363 5.363 10 C 0.018 3.982 11 H 0.126 0.874 12 C -0.175 4.175 13 C -0.142 4.142 14 H 0.123 0.877 15 C 0.021 3.979 16 N -0.153 5.153 17 C -0.094 4.094 18 C -0.305 4.305 19 C -0.142 4.142 20 N -0.119 5.119 21 C -0.185 4.185 22 C -0.038 4.038 23 O -0.061 6.061 24 H 0.232 0.768 25 H 0.150 0.850 26 H -0.171 1.171 27 H -0.177 1.177 28 H 0.180 0.820 29 H 0.234 0.766 30 H 0.120 0.880 31 H 0.099 0.901 32 H 0.116 0.884 33 H 0.105 0.895 34 H 0.190 0.810 35 H 0.164 0.836 36 H 0.199 0.801 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -0.058 2.520 -3.429 4.255 hybrid contribution 1.049 -1.348 -0.089 1.711 sum 0.991 1.171 -3.518 3.838 Atomic orbital electron populations 1.86580 1.16031 1.81751 1.49112 1.24451 0.85283 1.11357 0.92830 0.94260 0.81427 0.76506 0.87197 1.22753 0.99739 0.94219 0.93921 1.22535 1.01194 0.95417 0.95114 1.21494 1.07998 0.95082 0.99706 1.17253 0.78182 0.86638 0.79990 1.90822 1.43867 1.36899 1.68930 1.45487 1.53387 1.14463 1.22921 1.21770 0.99220 0.86198 0.90968 0.87427 1.23341 0.94495 1.03866 0.95802 1.23025 0.94872 1.00469 0.95868 0.87749 1.21787 0.75115 1.02055 0.98926 1.48710 1.09212 1.03818 1.53521 1.22599 0.91696 0.93861 1.01194 1.21560 0.98477 0.94996 1.15455 1.23917 0.95315 0.95493 0.99481 1.77301 1.04007 1.07609 1.22975 1.23575 0.96832 0.99620 0.98501 1.24474 0.99451 0.87145 0.92686 1.83692 1.54530 1.40118 1.27753 0.76793 0.84963 1.17116 1.17720 0.82006 0.76647 0.88035 0.90098 0.88372 0.89487 0.81050 0.83555 0.80091 0.90891 0.88853 0.77002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.21 12.86 -35.23 -0.45 -0.24 16 2 C -0.03 0.02 2.97 36.00 0.11 0.13 16 3 Si 0.71 -1.05 32.08 -169.99 -5.45 -6.50 16 4 C -0.06 -0.03 6.20 -35.74 -0.22 -0.25 16 5 C -0.12 -0.25 10.88 -37.45 -0.41 -0.66 16 6 C -0.24 -0.32 6.31 -103.28 -0.65 -0.97 16 7 C 0.59 1.57 7.81 -12.54 -0.10 1.47 16 8 O -0.53 -3.64 16.60 5.27 0.09 -3.55 16 9 N -0.71 0.57 5.26 -54.10 -0.28 0.29 16 10 C 0.12 -0.14 4.30 -67.12 -0.29 -0.43 16 11 H 0.11 0.06 7.50 -51.93 -0.39 -0.33 16 12 C -0.14 0.49 7.38 -25.92 -0.19 0.30 16 13 C -0.12 0.30 3.76 -89.67 -0.34 -0.04 16 14 H 0.10 -0.10 7.97 -51.93 -0.41 -0.52 16 15 C 0.14 -0.32 6.35 -4.04 -0.03 -0.35 16 16 N -0.37 -0.29 3.68 -61.36 -0.23 -0.51 16 17 C 0.05 0.00 11.45 -17.22 -0.20 -0.19 16 18 C -0.28 -0.23 10.80 -40.01 -0.43 -0.66 16 19 C 0.04 0.07 12.03 -17.36 -0.21 -0.14 16 20 N -0.30 -0.86 12.28 30.62 0.38 -0.48 16 21 C -0.15 0.19 7.45 -25.77 -0.19 0.00 16 22 C 0.03 -0.05 11.61 30.07 0.35 0.30 16 23 O -0.17 0.05 8.89 7.63 0.07 0.12 16 24 H 0.38 -1.66 8.70 45.56 0.40 -1.27 16 25 H 0.13 -0.11 7.96 -51.93 -0.41 -0.52 16 26 H -0.25 -0.29 7.11 56.52 0.40 0.11 16 27 H -0.25 -0.35 7.11 56.52 0.40 0.05 16 28 H 0.16 0.42 8.06 -52.49 -0.42 0.00 16 29 H 0.40 -1.42 7.67 -40.82 -0.31 -1.73 16 30 H 0.10 -0.48 8.10 -51.93 -0.42 -0.90 16 31 H 0.08 -0.32 8.14 -51.93 -0.42 -0.74 16 32 H 0.10 -0.43 7.78 -51.93 -0.40 -0.83 16 33 H 0.09 -0.23 8.14 -51.93 -0.42 -0.65 16 34 H 0.17 -0.53 8.06 -52.48 -0.42 -0.95 16 35 H 0.15 -0.13 8.06 -52.49 -0.42 -0.55 16 36 H 0.18 -0.17 8.06 -52.49 -0.42 -0.59 16 37 H 0.07 0.06 8.14 -51.93 -0.42 -0.36 16 38 H 0.09 -0.21 7.91 -51.93 -0.41 -0.62 16 39 H 0.21 -1.26 7.47 -52.49 -0.39 -1.65 16 LS Contribution 342.89 15.07 5.17 5.17 Total: 0.00 -10.83 342.89 -8.43 -19.26 By element: Atomic # 1 Polarization: -7.14 SS G_CDS: -4.92 Total: -12.06 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -2.80 Total: -1.49 kcal Atomic # 7 Polarization: -0.57 SS G_CDS: -0.13 Total: -0.71 kcal Atomic # 8 Polarization: -3.37 SS G_CDS: -0.30 Total: -3.67 kcal Atomic # 14 Polarization: -1.05 SS G_CDS: -5.45 Total: -6.50 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -10.83 -8.43 -19.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_13456056.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.597 kcal (2) G-P(sol) polarization free energy of solvation -10.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds