Wall clock time and date at job start Sun Mar 7 2021 04:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86294 * 109.47073 * 2 1 4 4 C 1.50696 * 109.46847 * 240.00069 * 2 1 3 5 5 C 1.34177 * 125.43743 * 299.99231 * 4 2 1 6 6 C 1.47029 * 105.95271 * 179.75629 * 5 4 2 7 7 C 1.47375 * 127.19001 * 180.26328 * 6 5 4 8 8 O 1.21613 * 120.00281 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99854 * 180.02562 * 7 6 5 10 10 C 1.46504 * 120.00035 * 179.97438 * 9 7 6 11 11 H 1.09001 * 112.84806 * 25.33400 * 10 9 7 12 12 C 1.53782 * 113.61384 * 156.53003 * 10 9 7 13 13 C 1.53778 * 87.08315 * 89.11613 * 12 10 9 14 14 H 1.09000 * 113.61470 * 270.88394 * 13 12 10 15 15 C 1.52997 * 113.61594 * 140.06343 * 13 12 10 16 16 N 1.46505 * 109.47173 * 175.00274 * 15 13 12 17 17 C 1.34942 * 126.03625 * 125.00104 * 16 15 13 18 18 C 1.35322 * 107.74639 * 179.97438 * 17 16 15 19 19 C 1.39868 * 107.91961 * 359.97438 * 18 17 16 20 20 N 1.30841 * 108.19832 * 359.74510 * 19 18 17 21 21 C 1.53779 * 113.61405 * 254.13684 * 10 9 7 22 22 C 1.36414 * 105.61423 * 0.23221 * 6 5 4 23 23 O 1.33657 * 108.40072 * 359.97438 * 22 6 5 24 24 H 0.96702 * 114.00029 * 60.00211 * 1 2 3 25 25 H 1.09005 * 109.46962 * 120.00095 * 2 1 3 26 26 H 1.48501 * 109.99987 * 59.99755 * 3 2 1 27 27 H 1.48499 * 110.00086 * 181.31878 * 3 2 1 28 28 H 1.08002 * 127.02646 * 0.02836 * 5 4 2 29 29 H 0.97004 * 120.00099 * 0.02562 * 9 7 6 30 30 H 1.08994 * 113.61608 * 203.66870 * 12 10 9 31 31 H 1.09003 * 113.61236 * 334.48573 * 12 10 9 32 32 H 1.09005 * 109.47100 * 294.99898 * 15 13 12 33 33 H 1.08993 * 109.46947 * 55.00231 * 15 13 12 34 34 H 1.08008 * 126.13109 * 359.97438 * 17 16 15 35 35 H 1.07994 * 126.03929 * 180.02562 * 18 17 16 36 36 H 1.07995 * 125.90038 * 179.97438 * 19 18 17 37 37 H 1.09000 * 113.61431 * 25.43651 * 21 10 9 38 38 H 1.09005 * 113.61476 * 156.33780 * 21 10 9 39 39 H 1.08002 * 125.80114 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6753 -1.9882 -1.5500 6 6 2.3635 -2.2311 -2.8264 7 6 2.3861 -3.4841 -3.6019 8 8 1.7884 -4.4620 -3.1949 9 7 3.0691 -3.5464 -4.7621 10 6 3.0920 -4.7921 -5.5327 11 1 2.2243 -5.4237 -5.3421 12 6 3.3876 -4.5863 -7.0278 13 6 4.8776 -4.7174 -6.6707 14 1 5.3487 -3.7701 -6.4084 15 6 5.6848 -5.5192 -7.6936 16 7 7.1036 -5.4868 -7.3299 17 6 7.8990 -6.5600 -7.1393 18 6 9.1331 -6.1070 -6.8184 19 6 9.0905 -4.7090 -6.8133 20 7 7.8758 -4.3361 -7.1254 21 6 4.4311 -5.5435 -5.4494 22 6 2.9762 -1.0542 -3.1431 23 8 2.7080 -0.1666 -2.1804 24 1 -0.3933 0.4417 -0.7651 25 1 1.7924 -0.5139 0.8900 26 1 1.5614 2.4678 1.2085 27 1 3.5346 1.7703 -0.0321 28 1 1.0812 -2.6929 -0.9872 29 1 3.5461 -2.7665 -5.0865 30 1 3.0178 -5.3926 -7.6611 31 1 3.1107 -3.5982 -7.3956 32 1 5.3357 -6.5518 -7.7030 33 1 5.5533 -5.0821 -8.6833 34 1 7.6037 -7.5952 -7.2272 35 1 9.9982 -6.7171 -6.6049 36 1 9.9181 -4.0510 -6.5935 37 1 4.9974 -5.3273 -4.5435 38 1 4.3461 -6.6112 -5.6520 39 1 3.5754 -0.8705 -4.0227 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_13456056.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:35:59 Heat of formation + Delta-G solvation = 62.969052 kcal Electronic energy + Delta-G solvation = -23784.381850 eV Core-core repulsion = 20084.471287 eV Total energy + Delta-G solvation = -3699.910564 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.76472 -42.06454 -41.18013 -39.37892 -38.02803 -35.18895 -34.11270 -33.31719 -31.73423 -30.96731 -28.60548 -26.78783 -26.72366 -25.40425 -23.86125 -22.35957 -22.00462 -21.61223 -21.16492 -20.20490 -19.34463 -18.21228 -17.80516 -17.53023 -17.50165 -17.00609 -16.48183 -16.22311 -15.99887 -15.65861 -15.59680 -15.41633 -14.82768 -14.56177 -14.29014 -14.25305 -14.06301 -13.87678 -13.63892 -13.51735 -13.46974 -12.84285 -12.78295 -12.24023 -12.23127 -11.68627 -11.57719 -11.35318 -11.30450 -11.01270 -10.66809 -10.32759 -10.20371 -9.82243 -9.46638 -4.99669 0.20329 0.77299 1.00953 1.16862 1.47791 1.67706 1.79748 1.91744 1.95642 1.97213 2.17238 3.26630 3.37692 3.43841 3.49846 3.53007 3.56131 3.78157 3.92372 3.97779 4.09044 4.21445 4.24618 4.34632 4.40720 4.47145 4.52716 4.66193 4.69287 4.74042 4.80599 4.84358 4.91416 4.95979 5.04159 5.08809 5.14070 5.16858 5.51422 5.76217 5.78860 6.18960 6.38731 6.61147 6.78605 7.07022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.037 4.037 3 Si 0.799 3.201 4 C -0.051 4.051 5 C -0.152 4.152 6 C -0.270 4.270 7 C 0.589 3.411 8 O -0.584 6.584 9 N -0.695 5.695 10 C 0.112 3.888 11 H 0.088 0.912 12 C -0.116 4.116 13 C -0.112 4.112 14 H 0.091 0.909 15 C 0.135 3.865 16 N -0.374 5.374 17 C 0.051 3.949 18 C -0.295 4.295 19 C 0.028 3.972 20 N -0.332 5.332 21 C -0.145 4.145 22 C 0.065 3.935 23 O -0.163 6.163 24 H 0.400 0.600 25 H 0.130 0.870 26 H -0.284 1.284 27 H -0.289 1.289 28 H 0.144 0.856 29 H 0.414 0.586 30 H 0.121 0.879 31 H 0.092 0.908 32 H 0.124 0.876 33 H 0.094 0.906 34 H 0.203 0.797 35 H 0.158 0.842 36 H 0.196 0.804 37 H 0.046 0.954 38 H 0.104 0.896 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.042 2.211 -6.290 6.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.146 4.146 3 Si 0.703 3.297 4 C -0.100 4.100 5 C -0.172 4.172 6 C -0.274 4.274 7 C 0.378 3.622 8 O -0.465 6.465 9 N -0.346 5.346 10 C 0.007 3.993 11 H 0.106 0.894 12 C -0.154 4.154 13 C -0.131 4.131 14 H 0.109 0.891 15 C 0.015 3.985 16 N -0.156 5.156 17 C -0.095 4.095 18 C -0.325 4.325 19 C -0.157 4.157 20 N -0.155 5.155 21 C -0.184 4.184 22 C -0.005 4.005 23 O -0.059 6.059 24 H 0.251 0.749 25 H 0.147 0.853 26 H -0.210 1.210 27 H -0.215 1.215 28 H 0.162 0.838 29 H 0.251 0.749 30 H 0.139 0.861 31 H 0.110 0.890 32 H 0.142 0.858 33 H 0.113 0.887 34 H 0.219 0.781 35 H 0.175 0.825 36 H 0.212 0.788 37 H 0.065 0.935 38 H 0.122 0.878 39 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 0.316 3.074 -5.266 6.106 hybrid contribution 0.955 -1.543 0.482 1.877 sum 1.271 1.531 -4.784 5.181 Atomic orbital electron populations 1.86544 1.16123 1.82252 1.50329 1.24677 0.85370 1.12243 0.92310 0.93172 0.77794 0.73776 0.84995 1.22813 0.99359 0.93625 0.94176 1.22551 1.02334 0.96119 0.96152 1.21473 1.10074 0.95851 1.00017 1.17512 0.77726 0.86416 0.80549 1.90784 1.46539 1.38765 1.70447 1.45375 1.52201 1.15258 1.21767 1.21893 0.98575 0.85988 0.92893 0.89390 1.23291 0.93056 1.05262 0.93837 1.22865 0.95536 0.99520 0.95228 0.89089 1.22072 0.73734 1.03696 0.99023 1.48969 1.10086 1.03470 1.53090 1.23147 0.91425 0.95040 0.99935 1.21858 0.99513 0.94925 1.16176 1.24298 0.95572 0.96405 0.99391 1.77221 1.04751 1.09152 1.24333 1.23578 0.96258 1.00527 0.98033 1.25262 0.97222 0.85434 0.92593 1.83720 1.54172 1.40186 1.27790 0.74867 0.85331 1.21021 1.21529 0.83802 0.74854 0.86119 0.88979 0.85842 0.88736 0.78071 0.82460 0.78764 0.93471 0.87754 0.72453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.15 12.86 -148.98 -1.92 -1.76 16 2 C -0.04 0.03 2.97 71.23 0.21 0.24 16 3 Si 0.80 -2.45 32.08 68.60 2.20 -0.25 16 4 C -0.05 -0.07 6.20 24.76 0.15 0.08 16 5 C -0.15 -0.92 10.88 23.65 0.26 -0.66 16 6 C -0.27 -0.95 6.31 -18.99 -0.12 -1.07 16 7 C 0.59 4.06 7.81 86.65 0.68 4.73 16 8 O -0.58 -9.80 16.60 -4.07 -0.07 -9.87 16 9 N -0.69 0.91 5.26 -443.34 -2.33 -1.42 16 10 C 0.11 -0.22 4.30 45.52 0.20 -0.02 16 11 H 0.09 0.22 7.50 -2.39 -0.02 0.20 16 12 C -0.12 1.00 7.38 31.12 0.23 1.23 16 13 C -0.11 0.64 3.76 -10.18 -0.04 0.60 16 14 H 0.09 -0.22 7.97 -2.39 -0.02 -0.24 16 15 C 0.13 -0.81 6.35 86.38 0.55 -0.26 16 16 N -0.37 -0.33 3.68 -348.05 -1.28 -1.61 16 17 C 0.05 -0.04 11.45 83.54 0.96 0.92 16 18 C -0.30 -0.46 10.80 21.99 0.24 -0.23 16 19 C 0.03 0.11 12.03 85.24 1.03 1.13 16 20 N -0.33 -1.98 12.28 -57.03 -0.70 -2.68 16 21 C -0.15 0.35 7.45 31.21 0.23 0.58 16 22 C 0.07 -0.28 11.61 67.39 0.78 0.50 16 23 O -0.16 0.26 8.89 4.38 0.04 0.30 16 24 H 0.40 -3.48 8.70 -74.06 -0.64 -4.12 16 25 H 0.13 -0.06 7.96 -2.38 -0.02 -0.08 16 26 H -0.28 -0.84 7.11 99.48 0.71 -0.13 16 27 H -0.29 -0.85 7.11 99.48 0.71 -0.14 16 28 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 29 H 0.41 -3.33 7.67 -92.71 -0.71 -4.04 16 30 H 0.12 -1.44 8.10 -2.39 -0.02 -1.46 16 31 H 0.09 -0.93 8.14 -2.39 -0.02 -0.95 16 32 H 0.12 -1.38 7.78 -2.38 -0.02 -1.40 16 33 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 34 H 0.20 -1.64 8.06 -2.91 -0.02 -1.66 16 35 H 0.16 -0.29 8.06 -2.91 -0.02 -0.31 16 36 H 0.20 -0.23 8.06 -2.91 -0.02 -0.25 16 37 H 0.05 0.15 8.14 -2.39 -0.02 0.13 16 38 H 0.10 -0.50 7.91 -2.38 -0.02 -0.52 16 39 H 0.26 -3.89 7.47 -2.91 -0.02 -3.91 16 Total: 0.00 -28.92 342.89 1.07 -27.85 By element: Atomic # 1 Polarization: -18.10 SS G_CDS: -0.23 Total: -18.33 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 5.35 Total: 7.78 kcal Atomic # 7 Polarization: -1.41 SS G_CDS: -4.31 Total: -5.72 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -1.95 Total: -11.34 kcal Atomic # 14 Polarization: -2.45 SS G_CDS: 2.20 Total: -0.25 kcal Total: -28.92 1.07 -27.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_13456056.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.820 kcal (2) G-P(sol) polarization free energy of solvation -28.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds