Wall clock time and date at job start Sun Mar 7 2021 04:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37873 * 126.45642 * 2 1 4 4 C 1.46680 * 126.23230 * 0.05288 * 3 2 1 5 5 O 1.21687 * 120.00116 * 0.02562 * 4 3 2 6 6 N 1.34781 * 119.99542 * 179.97438 * 4 3 2 7 7 C 1.46500 * 119.99659 * 180.02562 * 6 4 3 8 8 H 1.09000 * 112.85127 * 23.80820 * 7 6 4 9 9 C 1.53783 * 113.61175 * 154.99982 * 7 6 4 10 10 C 1.53780 * 87.07956 * 89.11895 * 9 7 6 11 11 H 1.09001 * 113.61383 * 270.88015 * 10 9 7 12 12 C 1.53003 * 113.61518 * 140.06362 * 10 9 7 13 13 N 1.46500 * 109.47198 * 174.99779 * 12 10 9 14 14 C 1.34947 * 126.03824 * 124.71517 * 13 12 10 15 15 C 1.35313 * 107.74619 * 179.84179 * 14 13 12 16 16 C 1.39865 * 107.92026 * 0.42293 * 15 14 13 17 17 N 1.30836 * 108.20451 * 359.74045 * 16 15 14 18 18 C 1.53779 * 113.61764 * 252.49929 * 7 6 4 19 19 N 1.37654 * 107.53347 * 179.76131 * 3 2 1 20 20 C 1.35539 * 108.64059 * 0.42448 * 19 3 2 21 21 C 1.50696 * 125.56125 * 179.83699 * 20 19 3 22 22 O 1.42903 * 109.47131 * 299.71153 * 21 20 19 23 23 Si 1.86305 * 109.47185 * 179.71693 * 21 20 19 24 24 C 1.35451 * 108.87061 * 359.56736 * 20 19 3 25 25 H 1.08991 * 109.47126 * 270.00076 * 1 2 3 26 26 H 1.09003 * 109.46862 * 30.00260 * 1 2 3 27 27 H 1.09003 * 109.46857 * 149.99610 * 1 2 3 28 28 H 0.96998 * 120.00434 * 0.02562 * 6 4 3 29 29 H 1.09000 * 113.61532 * 203.66429 * 9 7 6 30 30 H 1.08997 * 113.61880 * 334.56880 * 9 7 6 31 31 H 1.09003 * 109.46981 * 294.99858 * 12 10 9 32 32 H 1.09000 * 109.46760 * 54.99958 * 12 10 9 33 33 H 1.08002 * 126.12491 * 0.02562 * 14 13 12 34 34 H 1.07998 * 126.03989 * 180.16380 * 15 14 13 35 35 H 1.08004 * 125.90078 * 179.75780 * 16 15 14 36 36 H 1.09009 * 113.61195 * 25.42824 * 18 7 6 37 37 H 1.08993 * 113.62090 * 156.33540 * 18 7 6 38 38 H 0.96997 * 125.68292 * 180.27456 * 19 3 2 39 39 H 1.08999 * 109.47358 * 59.71513 * 21 20 19 40 40 H 0.96700 * 114.00311 * 300.00591 * 22 21 20 41 41 H 1.48499 * 109.99670 * 58.67633 * 23 21 20 42 42 H 1.48497 * 110.00233 * 179.97438 * 23 21 20 43 43 H 1.07997 * 126.06427 * 180.22470 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.1089 0.0000 4 6 1.8898 2.5093 0.0011 5 8 0.7027 2.7766 0.0026 6 7 2.8037 3.4999 0.0015 7 6 2.3678 4.8986 0.0031 8 1 1.3648 5.0288 0.4094 9 6 3.4041 5.8660 0.5989 10 6 3.9847 5.9931 -0.8194 11 1 4.7510 5.2517 -1.0456 12 6 4.4104 7.4172 -1.1821 13 7 5.0560 7.4140 -2.4972 14 6 4.6971 8.1644 -3.5597 15 6 5.5414 7.8714 -4.5757 16 6 6.4412 6.9018 -4.1214 17 7 6.1512 6.6268 -2.8756 18 6 2.5881 5.6141 -1.3401 19 7 3.6284 0.6625 0.0055 20 6 3.6218 -0.6928 -0.0007 21 6 4.8433 -1.5752 -0.0012 22 8 5.6239 -1.3075 -1.1679 23 14 4.3182 -3.3628 -0.0022 24 6 2.3379 -1.1246 -0.0004 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5139 28 1 3.7500 3.2868 0.0007 29 1 2.9704 6.7915 0.9777 30 1 4.0842 5.3947 1.3085 31 1 3.5326 8.0629 -1.2099 32 1 5.1110 7.7885 -0.4343 33 1 3.8837 8.8742 -3.5923 34 1 5.5211 8.3060 -5.5642 35 1 7.2381 6.4571 -4.6991 36 1 2.6096 4.9393 -2.1959 37 1 1.9314 6.4707 -1.4915 38 1 4.4191 1.2243 0.0105 39 1 5.4388 -1.3720 0.8889 40 1 5.1563 -1.4671 -1.9991 41 1 3.4791 -3.6449 -1.1944 42 1 5.5139 -4.2434 -0.0032 43 1 2.0136 -2.1548 -0.0011 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_13940406.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:36:03 Heat of formation + Delta-G solvation = 83.414185 kcal Electronic energy + Delta-G solvation = -26010.932769 eV Core-core repulsion = 22254.089816 eV Total energy + Delta-G solvation = -3756.842953 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.67091 -42.08847 -41.03736 -39.34758 -37.88149 -35.27861 -33.81942 -33.29374 -31.64336 -31.00464 -28.72461 -28.19723 -26.92460 -26.76800 -24.38550 -22.90687 -22.01726 -21.73684 -21.56028 -20.60425 -20.14074 -19.61426 -18.33969 -18.09327 -17.21980 -16.79121 -16.55550 -16.41964 -16.03861 -15.76881 -15.53295 -15.40519 -15.05257 -14.85712 -14.54899 -14.37002 -14.26348 -13.94378 -13.82980 -13.64873 -13.59212 -13.56420 -13.50819 -13.03723 -12.82259 -12.31703 -12.26482 -11.89154 -11.71822 -11.61596 -11.39547 -11.23100 -10.85812 -10.37893 -10.27500 -9.86713 -9.50518 -9.24714 -4.85697 0.24513 0.97281 1.19612 1.49824 1.63853 1.68007 1.85499 1.92044 1.94301 2.17936 2.18460 3.30182 3.33503 3.44493 3.47641 3.52832 3.69399 3.77152 3.92841 4.05875 4.10002 4.16253 4.19130 4.35979 4.46087 4.47557 4.60347 4.65080 4.67985 4.69007 4.74646 4.78162 4.87748 4.89071 4.90945 4.99052 5.06530 5.12936 5.13851 5.31300 5.45083 5.59414 5.72168 5.81722 6.15670 6.23128 6.35353 6.39555 6.74784 6.99055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.083 4.083 3 C -0.073 4.073 4 C 0.590 3.410 5 O -0.559 6.559 6 N -0.705 5.705 7 C 0.114 3.886 8 H 0.096 0.904 9 C -0.119 4.119 10 C -0.115 4.115 11 H 0.083 0.917 12 C 0.136 3.864 13 N -0.374 5.374 14 C 0.053 3.947 15 C -0.295 4.295 16 C 0.028 3.972 17 N -0.336 5.336 18 C -0.142 4.142 19 N -0.516 5.516 20 C 0.036 3.964 21 C -0.066 4.066 22 O -0.549 6.549 23 Si 0.798 3.202 24 C -0.206 4.206 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.079 0.921 28 H 0.405 0.595 29 H 0.124 0.876 30 H 0.084 0.916 31 H 0.127 0.873 32 H 0.093 0.907 33 H 0.205 0.795 34 H 0.159 0.841 35 H 0.195 0.805 36 H 0.045 0.955 37 H 0.109 0.891 38 H 0.425 0.575 39 H 0.135 0.865 40 H 0.389 0.611 41 H -0.282 1.282 42 H -0.297 1.297 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.456 1.764 2.471 3.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.186 4.186 4 C 0.379 3.621 5 O -0.437 6.437 6 N -0.355 5.355 7 C 0.009 3.991 8 H 0.115 0.885 9 C -0.157 4.157 10 C -0.134 4.134 11 H 0.102 0.898 12 C 0.016 3.984 13 N -0.156 5.156 14 C -0.094 4.094 15 C -0.324 4.324 16 C -0.157 4.157 17 N -0.159 5.159 18 C -0.181 4.181 19 N -0.113 5.113 20 C -0.083 4.083 21 C -0.174 4.174 22 O -0.357 6.357 23 Si 0.701 3.299 24 C -0.230 4.230 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.240 0.760 29 H 0.142 0.858 30 H 0.103 0.897 31 H 0.145 0.855 32 H 0.111 0.889 33 H 0.222 0.778 34 H 0.177 0.823 35 H 0.211 0.789 36 H 0.064 0.936 37 H 0.127 0.873 38 H 0.265 0.735 39 H 0.153 0.847 40 H 0.239 0.761 41 H -0.209 1.209 42 H -0.225 1.225 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.436 0.849 3.672 3.794 hybrid contribution 0.948 1.164 -2.147 2.619 sum 1.384 2.013 1.525 2.880 Atomic orbital electron populations 1.20343 0.88999 1.02772 1.02594 1.20189 0.96396 0.91188 1.01444 1.20156 0.84496 0.93131 1.20848 1.17197 0.85604 0.83678 0.75623 1.90809 1.17375 1.83713 1.51822 1.45493 1.09391 1.05622 1.75024 1.21902 0.99924 0.79639 0.97647 0.88547 1.23317 0.96943 1.00265 0.95178 1.22807 0.96601 0.96454 0.97531 0.89846 1.22070 0.98261 0.98189 0.79927 1.48965 1.24047 1.30968 1.11661 1.23172 1.01151 0.97788 0.87272 1.21863 1.01426 1.06677 1.02421 1.24295 1.00738 0.97968 0.92686 1.77232 1.04518 1.18184 1.15924 1.23522 0.96967 1.00917 0.96699 1.41837 1.06784 1.06830 1.55822 1.21254 0.97092 0.83255 1.06648 1.25140 0.91453 1.09285 0.91520 1.86580 1.42727 1.89686 1.16729 0.93303 0.78970 0.69956 0.87709 1.20838 0.90767 0.99611 1.11833 0.90931 0.92229 0.90249 0.75992 0.85776 0.89704 0.85500 0.88917 0.77847 0.82313 0.78863 0.93570 0.87285 0.73535 0.84746 0.76150 1.20850 1.22481 0.81415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.45 9.83 71.24 0.70 0.25 16 2 C -0.08 -0.44 6.21 -19.57 -0.12 -0.57 16 3 C -0.07 -0.36 7.06 40.35 0.28 -0.07 16 4 C 0.59 4.06 7.79 86.45 0.67 4.73 16 5 O -0.56 -7.69 14.40 -4.31 -0.06 -7.75 16 6 N -0.70 -0.21 5.26 -444.00 -2.33 -2.55 16 7 C 0.11 -0.16 4.32 45.52 0.20 0.03 16 8 H 0.10 0.17 7.46 -2.39 -0.02 0.16 16 9 C -0.12 0.87 7.39 31.12 0.23 1.10 16 10 C -0.11 0.49 3.74 -10.27 -0.04 0.45 16 11 H 0.08 0.01 7.96 -2.39 -0.02 -0.01 16 12 C 0.14 -0.69 6.35 86.38 0.55 -0.14 16 13 N -0.37 -0.67 3.68 -348.05 -1.28 -1.95 16 14 C 0.05 -0.02 11.45 83.54 0.96 0.94 16 15 C -0.29 -0.63 10.80 21.99 0.24 -0.39 16 16 C 0.03 0.13 12.02 85.24 1.02 1.16 16 17 N -0.34 -2.47 12.27 -57.02 -0.70 -3.17 16 18 C -0.14 0.29 7.43 31.12 0.23 0.52 16 19 N -0.52 0.25 5.99 -171.93 -1.03 -0.78 16 20 C 0.04 -0.03 6.47 41.34 0.27 0.24 16 21 C -0.07 0.23 3.08 71.23 0.22 0.45 16 22 O -0.55 0.24 12.88 -148.98 -1.92 -1.68 16 23 Si 0.80 -3.38 30.54 68.60 2.10 -1.28 16 24 C -0.21 -0.17 9.27 22.01 0.20 0.03 16 25 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 26 H 0.06 0.56 6.49 -2.39 -0.02 0.55 16 27 H 0.08 0.11 8.14 -2.39 -0.02 0.09 16 28 H 0.40 -1.62 7.83 -92.71 -0.73 -2.34 16 29 H 0.12 -1.39 8.10 -2.39 -0.02 -1.41 16 30 H 0.08 -0.65 8.14 -2.39 -0.02 -0.67 16 31 H 0.13 -1.38 7.78 -2.39 -0.02 -1.40 16 32 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 33 H 0.20 -1.64 8.06 -2.91 -0.02 -1.66 16 34 H 0.16 -0.24 8.06 -2.91 -0.02 -0.26 16 35 H 0.19 0.00 8.06 -2.91 -0.02 -0.02 16 36 H 0.05 0.17 8.14 -2.38 -0.02 0.15 16 37 H 0.11 -0.56 7.90 -2.39 -0.02 -0.58 16 38 H 0.43 -2.05 8.19 -92.71 -0.76 -2.81 16 39 H 0.13 -0.83 7.96 -2.39 -0.02 -0.85 16 40 H 0.39 -1.89 8.70 -74.06 -0.64 -2.53 16 41 H -0.28 -0.13 7.11 99.48 0.71 0.58 16 42 H -0.30 -0.87 7.11 99.48 0.71 -0.17 16 43 H 0.17 -0.60 6.17 -2.91 -0.02 -0.62 16 Total: 0.00 -23.88 361.86 -0.65 -24.53 By element: Atomic # 1 Polarization: -13.07 SS G_CDS: -1.03 Total: -14.10 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 5.61 Total: 8.73 kcal Atomic # 7 Polarization: -3.11 SS G_CDS: -5.35 Total: -8.45 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: -1.98 Total: -9.43 kcal Atomic # 14 Polarization: -3.38 SS G_CDS: 2.10 Total: -1.28 kcal Total: -23.88 -0.65 -24.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_13940406.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.942 kcal (2) G-P(sol) polarization free energy of solvation -23.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds