Wall clock time and date at job start Sun Mar 7 2021 04:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86299 * 109.47631 * 2 1 4 4 C 1.50706 * 109.47150 * 120.00358 * 2 1 3 5 5 C 1.31115 * 118.54125 * 249.99598 * 4 2 1 6 6 N 1.38930 * 121.84506 * 180.12309 * 5 4 2 7 7 C 1.47036 * 118.88400 * 346.94263 * 6 5 4 8 8 C 1.50696 * 109.82242 * 163.20051 * 7 6 5 9 9 O 1.21280 * 120.00015 * 340.00727 * 8 7 6 10 10 N 1.34776 * 120.00096 * 160.00052 * 8 7 6 11 11 C 1.46491 * 120.00139 * 180.02562 * 10 8 7 12 12 H 1.08999 * 112.85073 * 336.19021 * 11 10 8 13 13 C 1.53785 * 113.61805 * 107.50335 * 11 10 8 14 14 C 1.53781 * 87.08263 * 89.11598 * 13 11 10 15 15 H 1.08999 * 113.61488 * 270.88710 * 14 13 11 16 16 C 1.53000 * 113.69163 * 139.99186 * 14 13 11 17 17 N 1.46497 * 109.46674 * 87.46266 * 16 14 13 18 18 C 1.34953 * 126.03370 * 125.00202 * 17 16 14 19 19 C 1.35316 * 107.74609 * 179.97438 * 18 17 16 20 20 C 1.39869 * 107.91942 * 359.97438 * 19 18 17 21 21 N 1.30836 * 108.20288 * 359.74349 * 20 19 18 22 22 C 1.53782 * 113.61539 * 205.00220 * 11 10 8 23 23 C 1.53542 * 107.65369 * 43.66309 * 7 6 5 24 24 C 1.50196 * 118.54786 * 70.20821 * 4 2 1 25 25 H 0.96702 * 114.00308 * 60.00015 * 1 2 3 26 26 H 1.09001 * 109.47166 * 240.00019 * 2 1 3 27 27 H 1.48502 * 109.99887 * 59.99849 * 3 2 1 28 28 H 1.48499 * 110.00357 * 181.31859 * 3 2 1 29 29 H 1.08002 * 119.08189 * 0.40812 * 5 4 2 30 30 H 0.96998 * 120.55664 * 166.96894 * 6 5 4 31 31 H 1.08996 * 109.82254 * 284.12499 * 7 6 5 32 32 H 0.96999 * 119.99778 * 0.02562 * 10 8 7 33 33 H 1.09002 * 113.61270 * 203.66214 * 13 11 10 34 34 H 1.08996 * 113.61018 * 334.56179 * 13 11 10 35 35 H 1.08999 * 109.46916 * 207.46393 * 16 14 13 36 36 H 1.08997 * 109.46915 * 327.46323 * 16 14 13 37 37 H 1.07994 * 126.12596 * 359.97438 * 18 17 16 38 38 H 1.08003 * 126.04298 * 180.02562 * 19 18 17 39 39 H 1.08006 * 125.89950 * 179.97438 * 20 19 18 40 40 H 1.09007 * 113.61580 * 25.42426 * 22 11 10 41 41 H 1.08999 * 113.61840 * 156.24702 * 22 11 10 42 42 H 1.09002 * 109.62588 * 58.77691 * 23 7 6 43 43 H 1.09000 * 109.61911 * 179.32896 * 23 7 6 44 44 H 1.09009 * 109.45018 * 39.79976 * 24 4 2 45 45 H 1.09003 * 109.00511 * 280.27197 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 2.5116 -0.0029 2.1694 6 7 3.0020 -0.5874 3.3304 7 6 2.6166 -1.9707 3.6467 8 6 3.5516 -2.5373 4.6839 9 8 4.6399 -2.0318 4.8600 10 7 3.1784 -3.6056 5.4158 11 6 4.0871 -4.1561 6.4244 12 1 5.1326 -3.9203 6.2260 13 6 3.6517 -3.8650 7.8704 14 6 2.8444 -5.1723 7.8072 15 1 1.8285 -5.0406 7.4347 16 6 2.9026 -5.9937 9.0967 17 7 1.8443 -5.5491 10.0069 18 6 0.8971 -6.3314 10.5655 19 6 0.1148 -5.5434 11.3389 20 6 0.6008 -4.2349 11.2503 21 7 1.6411 -4.2381 10.4568 22 6 3.8386 -5.6422 6.7321 23 6 2.7175 -2.7898 2.3519 24 6 1.7494 -2.1984 1.3247 25 1 -0.3934 0.4417 -0.7650 26 1 1.7923 -0.5138 -0.8900 27 1 1.5616 2.4679 1.2085 28 1 3.5347 1.7702 -0.0321 29 1 2.6070 1.0649 2.0387 30 1 3.5884 -0.0912 3.9227 31 1 1.5926 -1.9931 4.0194 32 1 2.3082 -4.0101 5.2747 33 1 4.4722 -3.8928 8.5874 34 1 3.0323 -2.9735 7.9687 35 1 2.7606 -7.0487 8.8621 36 1 3.8733 -5.8547 9.5725 37 1 0.7838 -7.3956 10.4212 38 1 -0.7344 -5.8677 11.9222 39 1 0.1907 -3.3716 11.7533 40 1 3.3698 -6.1855 5.9115 41 1 4.7105 -6.1561 7.1366 42 1 3.7357 -2.7406 1.9659 43 1 2.4492 -3.8269 2.5530 44 1 1.9374 -2.6495 0.3503 45 1 0.7249 -2.4122 1.6296 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_15413834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:36:10 Heat of formation + Delta-G solvation = 65.238263 kcal Electronic energy + Delta-G solvation = -26418.218676 eV Core-core repulsion = 22633.276077 eV Total energy + Delta-G solvation = -3784.942599 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.10939 -41.67581 -40.32496 -39.14035 -37.36195 -35.22615 -33.78705 -33.42615 -32.83307 -30.96635 -28.79358 -27.47787 -26.74961 -25.53718 -24.40689 -23.59544 -22.12433 -21.92197 -21.62371 -20.41719 -19.33883 -19.18551 -18.23762 -18.19803 -17.67640 -17.29971 -16.53950 -16.33431 -16.16607 -15.66137 -15.56054 -15.30320 -15.05883 -14.83973 -14.71148 -14.59695 -14.35352 -14.24220 -13.85979 -13.74845 -13.66859 -13.56012 -13.43914 -12.99358 -12.85163 -12.48905 -12.23671 -11.99064 -11.77789 -11.70767 -11.60476 -11.45210 -11.27849 -11.03616 -10.35628 -10.23159 -10.10531 -9.49714 -8.65080 -4.94392 1.00293 1.13180 1.27996 1.36557 1.62290 1.66582 1.73608 1.94427 1.96042 2.44025 3.30268 3.38541 3.42298 3.51955 3.62613 3.65677 3.72773 3.84860 3.94865 3.99389 4.07992 4.13183 4.20294 4.30136 4.33736 4.43174 4.51418 4.55496 4.62065 4.68128 4.70412 4.76775 4.78731 4.90013 4.90765 4.96765 5.00762 5.08070 5.11242 5.14915 5.15183 5.41282 5.46941 5.74281 6.06354 6.18902 6.30031 6.57117 6.78427 6.96571 7.02392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.567 6.567 2 C -0.050 4.050 3 Si 0.752 3.248 4 C -0.242 4.242 5 C 0.115 3.885 6 N -0.741 5.741 7 C 0.138 3.862 8 C 0.517 3.483 9 O -0.573 6.573 10 N -0.692 5.692 11 C 0.110 3.890 12 H 0.086 0.914 13 C -0.137 4.137 14 C -0.109 4.109 15 H 0.090 0.910 16 C 0.134 3.866 17 N -0.376 5.376 18 C 0.053 3.947 19 C -0.293 4.293 20 C 0.024 3.976 21 N -0.332 5.332 22 C -0.114 4.114 23 C -0.120 4.120 24 C -0.051 4.051 25 H 0.397 0.603 26 H 0.083 0.917 27 H -0.300 1.300 28 H -0.298 1.298 29 H 0.117 0.883 30 H 0.403 0.597 31 H 0.105 0.895 32 H 0.417 0.583 33 H 0.088 0.912 34 H 0.046 0.954 35 H 0.132 0.868 36 H 0.087 0.913 37 H 0.207 0.793 38 H 0.159 0.841 39 H 0.191 0.809 40 H 0.097 0.903 41 H 0.117 0.883 42 H 0.060 0.940 43 H 0.108 0.892 44 H 0.085 0.915 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.691 -6.989 -3.156 8.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.162 4.162 3 Si 0.661 3.339 4 C -0.252 4.252 5 C -0.005 4.005 6 N -0.374 5.374 7 C 0.029 3.971 8 C 0.303 3.697 9 O -0.452 6.452 10 N -0.344 5.344 11 C 0.004 3.996 12 H 0.104 0.896 13 C -0.176 4.176 14 C -0.128 4.128 15 H 0.108 0.892 16 C 0.014 3.986 17 N -0.158 5.158 18 C -0.093 4.093 19 C -0.322 4.322 20 C -0.161 4.161 21 N -0.154 5.154 22 C -0.153 4.153 23 C -0.159 4.159 24 C -0.089 4.089 25 H 0.247 0.753 26 H 0.101 0.899 27 H -0.229 1.229 28 H -0.226 1.226 29 H 0.134 0.866 30 H 0.239 0.761 31 H 0.123 0.877 32 H 0.254 0.746 33 H 0.107 0.893 34 H 0.065 0.935 35 H 0.150 0.850 36 H 0.105 0.895 37 H 0.224 0.776 38 H 0.177 0.823 39 H 0.208 0.792 40 H 0.116 0.884 41 H 0.135 0.865 42 H 0.079 0.921 43 H 0.127 0.873 44 H 0.104 0.896 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.376 -5.837 -2.691 6.573 hybrid contribution -0.558 -0.233 1.193 1.338 sum -1.934 -6.070 -1.498 6.545 Atomic orbital electron populations 1.86457 1.17964 1.82146 1.50985 1.24497 0.85226 1.08812 0.97653 0.94724 0.77202 0.77172 0.84778 1.20518 1.11171 0.96885 0.96640 1.20324 0.97594 0.95537 0.87079 1.44318 1.55376 1.13262 1.24413 1.21129 0.97524 0.83550 0.94895 1.20785 0.87144 0.80341 0.81432 1.90718 1.24278 1.60853 1.69337 1.45484 1.20784 1.30977 1.37129 1.21930 0.94212 0.96014 0.87424 0.89603 1.23371 0.99922 0.97918 0.96368 1.22769 0.99451 0.95716 0.94869 0.89168 1.22069 0.88802 1.00326 0.87407 1.49000 1.24829 1.05156 1.36863 1.23199 0.90423 0.99547 0.96117 1.21859 1.07138 0.93007 1.10243 1.24304 0.94354 0.99608 0.97826 1.77331 1.20552 0.99685 1.17868 1.23282 1.00032 0.93818 0.98129 1.21879 1.00785 0.99975 0.93245 1.20014 0.99008 0.90321 0.99511 0.75289 0.89887 1.22871 1.22622 0.86620 0.76107 0.87747 0.74572 0.89310 0.93474 0.85021 0.89474 0.77589 0.82293 0.79169 0.88408 0.86460 0.92113 0.87318 0.89623 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -0.53 12.86 -148.98 -1.92 -2.44 16 2 C -0.05 -0.05 2.80 71.24 0.20 0.15 16 3 Si 0.75 0.49 29.92 68.60 2.05 2.54 16 4 C -0.24 -1.26 5.40 -16.76 -0.09 -1.35 16 5 C 0.11 0.87 9.61 83.41 0.80 1.67 16 6 N -0.74 -5.21 5.46 -328.99 -1.80 -7.00 16 7 C 0.14 0.32 3.36 44.32 0.15 0.47 16 8 C 0.52 2.42 7.08 87.66 0.62 3.04 16 9 O -0.57 -7.80 15.70 -3.03 -0.05 -7.85 16 10 N -0.69 1.23 5.26 -440.05 -2.32 -1.09 16 11 C 0.11 -0.15 4.32 45.52 0.20 0.05 16 12 H 0.09 0.28 7.46 -2.39 -0.02 0.27 16 13 C -0.14 -0.05 7.43 31.12 0.23 0.18 16 14 C -0.11 0.58 3.70 -10.26 -0.04 0.54 16 15 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 16 C 0.13 -0.76 6.35 86.38 0.55 -0.21 16 17 N -0.38 -0.47 3.68 -348.07 -1.28 -1.75 16 18 C 0.05 -0.07 11.45 83.54 0.96 0.88 16 19 C -0.29 -0.44 10.80 21.99 0.24 -0.20 16 20 C 0.02 0.12 12.03 85.24 1.02 1.14 16 21 N -0.33 -2.51 12.42 -57.02 -0.71 -3.22 16 22 C -0.11 0.99 7.39 31.12 0.23 1.22 16 23 C -0.12 0.03 5.47 30.79 0.17 0.20 16 24 C -0.05 -0.06 5.85 29.70 0.17 0.11 16 25 H 0.40 -3.62 8.74 -74.06 -0.65 -4.27 16 26 H 0.08 -0.20 7.96 -2.39 -0.02 -0.22 16 27 H -0.30 -2.41 6.88 99.48 0.68 -1.73 16 28 H -0.30 -2.18 7.11 99.48 0.71 -1.47 16 29 H 0.12 0.94 4.34 -2.91 -0.01 0.93 16 30 H 0.40 3.36 8.12 -92.71 -0.75 2.61 16 31 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.42 -3.13 8.70 -92.71 -0.81 -3.94 16 33 H 0.09 0.09 7.90 -2.39 -0.02 0.07 16 34 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.13 -1.62 8.07 -2.39 -0.02 -1.64 16 36 H 0.09 -0.47 7.85 -2.39 -0.02 -0.49 16 37 H 0.21 -1.97 8.06 -2.91 -0.02 -2.00 16 38 H 0.16 -0.35 8.06 -2.91 -0.02 -0.38 16 39 H 0.19 0.11 8.06 -2.91 -0.02 0.09 16 40 H 0.10 -1.11 8.14 -2.38 -0.02 -1.13 16 41 H 0.12 -1.31 8.10 -2.39 -0.02 -1.33 16 42 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 43 H 0.11 -0.66 8.14 -2.39 -0.02 -0.68 16 44 H 0.09 -0.05 8.14 -2.38 -0.02 -0.07 16 45 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 Total: 0.00 -26.47 368.90 -1.77 -28.24 By element: Atomic # 1 Polarization: -14.14 SS G_CDS: -1.17 Total: -15.31 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 5.41 Total: 7.90 kcal Atomic # 7 Polarization: -6.96 SS G_CDS: -6.10 Total: -13.06 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -1.96 Total: -10.30 kcal Atomic # 14 Polarization: 0.49 SS G_CDS: 2.05 Total: 2.54 kcal Total: -26.47 -1.77 -28.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_15413834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.475 kcal (2) G-P(sol) polarization free energy of solvation -26.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds