Wall clock time and date at job start Sun Mar 7 2021 04:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86300 * 109.47185 * 2 1 4 4 C 1.50701 * 109.46720 * 119.99493 * 2 1 3 5 5 C 1.31116 * 118.55142 * 250.02803 * 4 2 1 6 6 N 1.38921 * 121.84951 * 179.57500 * 5 4 2 7 7 C 1.47032 * 118.88704 * 13.33108 * 6 5 4 8 8 C 1.53466 * 107.50777 * 316.24918 * 7 6 5 9 9 C 1.50212 * 118.54532 * 70.00119 * 4 2 1 10 10 C 1.50698 * 109.32899 * 320.31608 * 9 4 2 11 11 O 1.21282 * 119.99364 * 239.65341 * 10 9 4 12 12 N 1.34774 * 120.00600 * 59.64867 * 10 9 4 13 13 C 1.46496 * 120.00099 * 180.02562 * 12 10 9 14 14 H 1.08994 * 112.91109 * 23.75176 * 13 12 10 15 15 C 1.53787 * 113.61210 * 155.00440 * 13 12 10 16 16 C 1.53778 * 87.08035 * 89.11438 * 15 13 12 17 17 H 1.08999 * 113.61280 * 270.79710 * 16 15 13 18 18 C 1.53001 * 113.61263 * 139.98349 * 16 15 13 19 19 N 1.46505 * 109.47164 * 174.99956 * 18 16 15 20 20 C 1.34944 * 126.03783 * 125.00074 * 19 18 16 21 21 C 1.35309 * 107.74568 * 179.97438 * 20 19 18 22 22 C 1.39869 * 107.92224 * 359.97438 * 21 20 19 23 23 N 1.30844 * 108.20206 * 359.74524 * 22 21 20 24 24 C 1.53778 * 87.08449 * 25.43264 * 16 15 13 25 25 H 0.96698 * 114.00683 * 300.00503 * 1 2 3 26 26 H 1.08997 * 109.47710 * 239.99800 * 2 1 3 27 27 H 1.48498 * 109.99770 * 299.99552 * 3 2 1 28 28 H 1.48508 * 109.99857 * 61.31476 * 3 2 1 29 29 H 1.08001 * 119.07085 * 359.58645 * 5 4 2 30 30 H 0.96995 * 120.55421 * 193.35621 * 6 5 4 31 31 H 1.09003 * 109.82066 * 75.87456 * 7 6 5 32 32 H 1.08992 * 109.82001 * 196.73359 * 7 6 5 33 33 H 1.09000 * 109.71478 * 301.38153 * 8 7 6 34 34 H 1.08999 * 109.47729 * 180.85083 * 8 7 6 35 35 H 1.09005 * 109.32457 * 79.96282 * 9 4 2 36 36 H 0.97002 * 119.99411 * 0.02562 * 12 10 9 37 37 H 1.08998 * 113.61103 * 203.66698 * 15 13 12 38 38 H 1.08997 * 113.61087 * 334.48007 * 15 13 12 39 39 H 1.09008 * 109.46870 * 294.99672 * 18 16 15 40 40 H 1.09000 * 109.47055 * 54.99500 * 18 16 15 41 41 H 1.08002 * 126.12782 * 359.97438 * 20 19 18 42 42 H 1.08002 * 126.04481 * 180.02562 * 21 20 19 43 43 H 1.07997 * 125.90405 * 180.02562 * 22 21 20 44 44 H 1.08993 * 113.61229 * 220.02023 * 24 16 15 45 45 H 1.09000 * 113.61263 * 89.11673 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7103 1.2306 5 6 2.5110 -0.0027 2.1699 6 7 2.9912 -0.5855 3.3359 7 6 3.1170 -2.0491 3.3987 8 6 1.8440 -2.6486 2.7862 9 6 1.7450 -2.1977 1.3271 10 6 0.3896 -2.5671 0.7816 11 8 -0.4174 -3.1284 1.4920 12 7 0.0742 -2.2738 -0.4955 13 6 -1.2436 -2.6324 -1.0254 14 1 -1.9993 -2.7387 -0.2472 15 6 -1.6931 -1.7538 -2.2049 16 6 -0.9889 -2.7653 -3.1246 17 1 0.0608 -2.5340 -3.3052 18 6 -1.7612 -3.0650 -4.4109 19 7 -0.9591 -3.9404 -5.2693 20 6 -1.3481 -5.1293 -5.7754 21 6 -0.3245 -5.6185 -6.5127 22 6 0.7260 -4.6967 -6.4557 23 7 0.3445 -3.6876 -5.7154 24 6 -1.2100 -3.8081 -2.0162 25 1 -0.3934 0.4417 0.7650 26 1 1.7924 -0.5138 -0.8899 27 1 1.5616 2.4678 -1.2085 28 1 1.5878 2.4586 1.2243 29 1 2.6180 1.0633 2.0333 30 1 3.2389 -0.0362 4.0959 31 1 3.9902 -2.3698 2.8305 32 1 3.2142 -2.3675 4.4366 33 1 0.9709 -2.2992 3.3373 34 1 1.8969 -3.7364 2.8303 35 1 2.5175 -2.6967 0.7419 36 1 0.7199 -1.8251 -1.0636 37 1 -2.7745 -1.7217 -2.3380 38 1 -1.2363 -0.7642 -2.2111 39 1 -2.7005 -3.5599 -4.1638 40 1 -1.9689 -2.1325 -4.9357 41 1 -2.3051 -5.6051 -5.6198 42 1 -0.3196 -6.5549 -7.0508 43 1 1.6845 -4.7980 -6.9428 44 1 -0.3620 -4.4773 -1.8710 45 1 -2.1592 -4.3376 -2.0979 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_15608500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:36:14 Heat of formation + Delta-G solvation = 83.404648 kcal Electronic energy + Delta-G solvation = -27822.826088 eV Core-core repulsion = 24038.671243 eV Total energy + Delta-G solvation = -3784.154845 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.08657 -41.63213 -40.14511 -38.81417 -37.67290 -34.88905 -33.75644 -32.91171 -32.66260 -30.97312 -28.61751 -27.25923 -26.69149 -25.96976 -24.02489 -23.24594 -22.08636 -21.80906 -21.57673 -20.12461 -19.32143 -19.01310 -18.27712 -17.88802 -17.42890 -16.95640 -16.43114 -16.33014 -16.03081 -15.80165 -15.51371 -15.41448 -15.08342 -14.79401 -14.51817 -14.48097 -14.23422 -13.99649 -13.94867 -13.68952 -13.47425 -13.41553 -13.18604 -12.73706 -12.68168 -12.21341 -12.18871 -11.89278 -11.68152 -11.58109 -11.52784 -11.40792 -11.29212 -10.73079 -10.36457 -10.31035 -9.78015 -9.46094 -8.45031 -4.86286 1.01701 1.27156 1.40205 1.59838 1.66731 1.80381 1.96782 2.01888 2.32337 2.66267 3.43129 3.50505 3.53983 3.55996 3.66110 3.80479 3.89477 3.98117 4.02467 4.09084 4.20061 4.21584 4.33040 4.37322 4.41206 4.51137 4.59442 4.64887 4.70949 4.72007 4.74449 4.78899 4.82735 4.90874 4.92127 5.03755 5.11469 5.16876 5.20171 5.24912 5.26560 5.45050 5.72141 5.77208 6.18689 6.30944 6.55627 6.68227 6.79667 6.95138 7.37668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.536 6.536 2 C -0.060 4.060 3 Si 0.753 3.247 4 C -0.291 4.291 5 C 0.158 3.842 6 N -0.745 5.745 7 C 0.123 3.877 8 C -0.117 4.117 9 C -0.038 4.038 10 C 0.530 3.470 11 O -0.597 6.597 12 N -0.675 5.675 13 C 0.125 3.875 14 H 0.078 0.922 15 C -0.118 4.118 16 C -0.111 4.111 17 H 0.084 0.916 18 C 0.137 3.863 19 N -0.374 5.374 20 C 0.051 3.949 21 C -0.293 4.293 22 C 0.030 3.970 23 N -0.335 5.335 24 C -0.144 4.144 25 H 0.373 0.627 26 H 0.115 0.885 27 H -0.311 1.311 28 H -0.289 1.289 29 H 0.147 0.853 30 H 0.412 0.588 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.407 0.593 37 H 0.110 0.890 38 H 0.081 0.919 39 H 0.123 0.877 40 H 0.089 0.911 41 H 0.202 0.798 42 H 0.160 0.840 43 H 0.197 0.803 44 H 0.048 0.952 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.123 1.326 0.476 3.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.343 6.343 2 C -0.171 4.171 3 Si 0.661 3.339 4 C -0.302 4.302 5 C 0.035 3.965 6 N -0.375 5.375 7 C -0.002 4.002 8 C -0.156 4.156 9 C -0.059 4.059 10 C 0.318 3.682 11 O -0.479 6.479 12 N -0.327 5.327 13 C 0.019 3.981 14 H 0.096 0.904 15 C -0.157 4.157 16 C -0.130 4.130 17 H 0.103 0.897 18 C 0.017 3.983 19 N -0.156 5.156 20 C -0.096 4.096 21 C -0.323 4.323 22 C -0.155 4.155 23 N -0.157 5.157 24 C -0.182 4.182 25 H 0.222 0.778 26 H 0.132 0.868 27 H -0.240 1.240 28 H -0.216 1.216 29 H 0.164 0.836 30 H 0.249 0.751 31 H 0.093 0.907 32 H 0.115 0.885 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.124 0.876 36 H 0.246 0.754 37 H 0.128 0.872 38 H 0.099 0.901 39 H 0.141 0.859 40 H 0.107 0.893 41 H 0.219 0.781 42 H 0.178 0.822 43 H 0.214 0.786 44 H 0.067 0.933 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.711 2.535 0.994 3.842 hybrid contribution -1.065 -0.624 0.070 1.236 sum 1.646 1.911 1.064 2.737 Atomic orbital electron populations 1.86702 1.18552 1.79504 1.49543 1.24813 0.83681 1.10160 0.98426 0.94341 0.91003 0.72998 0.75593 1.20444 1.14460 0.93981 1.01325 1.20697 0.91998 0.97356 0.86495 1.44686 1.71274 1.06673 1.14912 1.21674 0.96206 0.79946 1.02338 1.21640 0.98826 1.00907 0.94265 1.19718 0.93641 0.94915 0.97635 1.20807 0.89441 0.76479 0.81475 1.90656 1.52853 1.45052 1.59307 1.45643 1.15948 1.59098 1.11992 1.21611 0.85969 0.95665 0.94897 0.90390 1.23219 1.02032 0.97965 0.92472 1.22757 1.00272 0.97575 0.92376 0.89727 1.22028 0.92937 0.94441 0.88908 1.48943 1.11362 1.16469 1.38853 1.23155 1.01709 0.87750 0.96971 1.21854 0.94711 1.04759 1.10928 1.24321 1.01215 0.92057 0.97941 1.77253 0.95000 1.24923 1.18540 1.23527 1.02425 0.96568 0.95729 0.77840 0.86768 1.23955 1.21637 0.83628 0.75146 0.90726 0.88547 0.92937 0.90865 0.87630 0.75411 0.87153 0.90067 0.85863 0.89275 0.78073 0.82233 0.78609 0.93311 0.88046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.01 9.14 -148.98 -1.36 -1.35 16 2 C -0.06 0.19 1.74 71.24 0.12 0.31 16 3 Si 0.75 -2.69 29.96 68.60 2.05 -0.63 16 4 C -0.29 0.56 5.14 -16.76 -0.09 0.48 16 5 C 0.16 -0.61 9.62 83.41 0.80 0.20 16 6 N -0.75 3.73 5.83 -346.02 -2.02 1.71 16 7 C 0.12 -0.54 7.16 86.43 0.62 0.08 16 8 C -0.12 -0.21 4.89 30.76 0.15 -0.06 16 9 C -0.04 -0.05 2.75 -12.43 -0.03 -0.09 16 10 C 0.53 3.87 6.37 87.66 0.56 4.42 16 11 O -0.60 -9.64 15.40 -3.04 -0.05 -9.69 16 12 N -0.68 -2.05 2.92 -440.04 -1.28 -3.33 16 13 C 0.12 0.35 4.27 45.52 0.19 0.54 16 14 H 0.08 0.58 7.47 -2.39 -0.02 0.56 16 15 C -0.12 0.24 7.39 31.12 0.23 0.47 16 16 C -0.11 0.08 3.75 -10.27 -0.04 0.04 16 17 H 0.08 0.29 7.97 -2.39 -0.02 0.27 16 18 C 0.14 -0.29 6.35 86.38 0.55 0.26 16 19 N -0.37 -1.34 3.68 -348.05 -1.28 -2.62 16 20 C 0.05 0.05 11.45 83.54 0.96 1.01 16 21 C -0.29 -0.83 10.80 21.99 0.24 -0.59 16 22 C 0.03 0.16 12.03 85.23 1.02 1.18 16 23 N -0.33 -2.83 12.28 -57.02 -0.70 -3.53 16 24 C -0.14 -0.18 7.43 31.12 0.23 0.06 16 25 H 0.37 -0.64 8.70 -74.06 -0.64 -1.29 16 26 H 0.11 -0.59 6.39 -2.39 -0.02 -0.60 16 27 H -0.31 -1.62 7.11 99.48 0.71 -0.91 16 28 H -0.29 -0.12 6.84 99.48 0.68 0.56 16 29 H 0.15 -0.98 4.30 -2.91 -0.01 -1.00 16 30 H 0.41 -3.56 8.96 -92.71 -0.83 -4.39 16 31 H 0.07 -0.44 8.14 -2.39 -0.02 -0.46 16 32 H 0.10 -0.68 8.14 -2.39 -0.02 -0.70 16 33 H 0.05 0.39 7.76 -2.39 -0.02 0.37 16 34 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.11 -0.13 8.14 -2.38 -0.02 -0.15 16 36 H 0.41 0.11 5.61 -92.71 -0.52 -0.41 16 37 H 0.11 -0.59 8.10 -2.39 -0.02 -0.61 16 38 H 0.08 -0.04 7.83 -2.39 -0.02 -0.06 16 39 H 0.12 -0.93 7.77 -2.38 -0.02 -0.95 16 40 H 0.09 -0.23 8.14 -2.39 -0.02 -0.25 16 41 H 0.20 -1.30 8.06 -2.91 -0.02 -1.32 16 42 H 0.16 -0.17 8.06 -2.91 -0.02 -0.19 16 43 H 0.20 0.00 8.06 -2.91 -0.02 -0.02 16 44 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 45 H 0.10 -0.15 7.90 -2.39 -0.02 -0.17 16 Total: 0.00 -22.36 356.06 -0.07 -22.43 By element: Atomic # 1 Polarization: -10.34 SS G_CDS: -0.95 Total: -11.29 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 5.52 Total: 8.31 kcal Atomic # 7 Polarization: -2.49 SS G_CDS: -5.28 Total: -7.77 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -1.41 Total: -11.04 kcal Atomic # 14 Polarization: -2.69 SS G_CDS: 2.05 Total: -0.63 kcal Total: -22.36 -0.07 -22.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_15608500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.832 kcal (2) G-P(sol) polarization free energy of solvation -22.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds