Wall clock time and date at job start Sun Mar 7 2021 04:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86301 * 109.47268 * 2 1 4 4 C 1.50704 * 109.47433 * 240.00096 * 2 1 3 5 5 C 1.34490 * 125.49873 * 150.24977 * 4 2 1 6 6 C 1.46747 * 106.36805 * 180.15580 * 5 4 2 7 7 C 1.47264 * 126.96988 * 179.88047 * 6 5 4 8 8 O 1.21633 * 119.99975 * 179.68496 * 7 6 5 9 9 N 1.34777 * 119.99990 * 359.41144 * 7 6 5 10 10 C 1.46504 * 119.99854 * 180.27781 * 9 7 6 11 11 H 1.08994 * 112.85022 * 336.19146 * 10 9 7 12 12 C 1.53783 * 113.61316 * 107.50055 * 10 9 7 13 13 C 1.53783 * 87.07906 * 89.11585 * 12 10 9 14 14 H 1.08999 * 113.60886 * 270.88202 * 13 12 10 15 15 C 1.53002 * 113.69003 * 139.99149 * 13 12 10 16 16 N 1.46503 * 109.47083 * 87.45949 * 15 13 12 17 17 C 1.34943 * 126.03421 * 124.71812 * 16 15 13 18 18 C 1.35321 * 107.74515 * 179.83909 * 17 16 15 19 19 C 1.39876 * 107.91810 * 0.42276 * 18 17 16 20 20 N 1.30838 * 108.20111 * 359.73684 * 19 18 17 21 21 C 1.53774 * 87.08299 * 25.43119 * 13 12 10 22 22 C 1.36334 * 106.06145 * 359.61895 * 6 5 4 23 23 C 1.51003 * 126.79473 * 180.27181 * 22 6 5 24 24 C 1.53386 * 108.25507 * 164.30499 * 23 22 6 25 25 C 1.53157 * 109.05146 * 48.45345 * 24 23 22 26 26 C 1.53129 * 109.52424 * 290.43311 * 25 24 23 27 27 N 1.35214 * 108.66302 * 0.24617 * 22 6 5 28 28 H 0.96698 * 114.00234 * 60.00139 * 1 2 3 29 29 H 1.09004 * 109.47324 * 120.00327 * 2 1 3 30 30 H 1.48498 * 109.99810 * 59.99904 * 3 2 1 31 31 H 1.48499 * 109.99843 * 181.31776 * 3 2 1 32 32 H 1.08001 * 126.81634 * 0.04392 * 5 4 2 33 33 H 0.97000 * 119.99736 * 0.27056 * 9 7 6 34 34 H 1.09003 * 113.60807 * 203.66362 * 12 10 9 35 35 H 1.08995 * 113.61705 * 334.55989 * 12 10 9 36 36 H 1.08994 * 109.46962 * 207.46301 * 15 13 12 37 37 H 1.08997 * 109.47084 * 327.46292 * 15 13 12 38 38 H 1.07998 * 126.12958 * 359.97438 * 17 16 15 39 39 H 1.07995 * 126.04265 * 180.15761 * 18 17 16 40 40 H 1.07995 * 125.89620 * 179.75542 * 19 18 17 41 41 H 1.09004 * 113.61080 * 220.01891 * 21 13 12 42 42 H 1.08995 * 113.61678 * 89.11621 * 21 13 12 43 43 H 1.08998 * 109.70461 * 283.99519 * 23 22 6 44 44 H 1.09005 * 109.70550 * 44.57280 * 23 22 6 45 45 H 1.08998 * 109.54261 * 168.32972 * 24 23 22 46 46 H 1.09006 * 109.54207 * 288.49931 * 24 23 22 47 47 H 1.09005 * 109.45775 * 50.44207 * 25 24 23 48 48 H 1.09002 * 109.46643 * 170.41281 * 25 24 23 49 49 H 1.09000 * 109.56755 * 170.83345 * 26 25 24 50 50 H 1.09005 * 109.56203 * 291.17032 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 3.0879 -0.4495 -1.8653 6 6 3.1547 -1.3768 -3.0008 7 6 4.2327 -1.4785 -3.9989 8 8 4.1602 -2.3027 -4.8905 9 7 5.2970 -0.6547 -3.9277 10 6 6.3665 -0.7519 -4.9242 11 1 6.4178 -1.7333 -5.3956 12 6 6.3842 0.4159 -5.9246 13 6 7.3026 1.1488 -4.9325 14 1 6.7627 1.7406 -4.1933 15 6 8.4363 1.9267 -5.6036 16 7 7.9688 3.2719 -5.9473 17 6 8.5437 4.4328 -5.5695 18 6 7.8135 5.4444 -6.0934 19 6 6.7504 4.8826 -6.8080 20 7 6.8425 3.5803 -6.7212 21 6 7.7258 -0.2383 -4.4210 22 6 2.0192 -2.1289 -2.9408 23 6 1.6158 -3.2348 -3.8866 24 6 0.4950 -4.0471 -3.2259 25 6 -0.5700 -3.0858 -2.6900 26 6 -0.0053 -2.3103 -1.4964 27 7 1.2884 -1.7251 -1.8772 28 1 -0.3933 0.4417 -0.7650 29 1 1.7923 -0.5139 0.8900 30 1 1.5614 2.4678 1.2085 31 1 3.5346 1.7702 -0.0321 32 1 3.8211 0.2958 -1.5944 33 1 5.3548 0.0026 -3.2167 34 1 6.8686 0.1731 -6.8705 35 1 5.4132 0.8935 -6.0556 36 1 9.2816 1.9995 -4.9194 37 1 8.7463 1.4072 -6.5103 38 1 9.4294 4.5360 -4.9602 39 1 8.0134 6.4993 -5.9765 40 1 5.9858 5.4293 -7.3399 41 1 7.8379 -0.2887 -3.3379 42 1 8.5769 -0.6598 -4.9557 43 1 1.2565 -2.8056 -4.8219 44 1 2.4717 -3.8805 -4.0835 45 1 0.0465 -4.7149 -3.9614 46 1 0.9056 -4.6334 -2.4038 47 1 -0.8557 -2.3860 -3.4754 48 1 -1.4452 -3.6532 -2.3733 49 1 -0.6972 -1.5158 -1.2170 50 1 0.1343 -2.9879 -0.6540 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_16915396.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:36:18 Heat of formation + Delta-G solvation = 86.347808 kcal Electronic energy + Delta-G solvation = -31972.902322 eV Core-core repulsion = 27776.885202 eV Total energy + Delta-G solvation = -4196.017120 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.83644 -42.01807 -40.98665 -39.21852 -37.97450 -36.89633 -34.96194 -33.62428 -33.22578 -31.20162 -30.92521 -29.63421 -28.39812 -26.69073 -26.58180 -24.73932 -24.68605 -23.53905 -21.87948 -21.80603 -21.55484 -21.31129 -20.28312 -19.52245 -18.92004 -18.12213 -17.47030 -17.06570 -16.69918 -16.62140 -16.21537 -16.02317 -15.96659 -15.66598 -15.40322 -15.21702 -15.17242 -15.05534 -14.79120 -14.66036 -14.57179 -14.37718 -14.23822 -13.90917 -13.64337 -13.51783 -13.37266 -13.27651 -12.79521 -12.75719 -12.39416 -12.15043 -12.09523 -11.98843 -11.81465 -11.80036 -11.62552 -11.54472 -11.20533 -10.95146 -10.69057 -10.30175 -10.09278 -9.60437 -9.44753 -9.09639 -4.95341 0.67228 1.02214 1.05431 1.35002 1.63411 1.71228 1.77752 1.99073 1.99786 2.34177 2.47558 3.28890 3.37468 3.43607 3.49646 3.56293 3.67637 3.70900 3.78957 3.81042 3.83312 4.05364 4.10213 4.11822 4.25110 4.31182 4.32703 4.38655 4.39039 4.40646 4.49913 4.59410 4.68546 4.73977 4.76081 4.78250 4.79785 4.81723 4.87734 4.95248 4.96092 4.99734 5.05935 5.07875 5.12473 5.19921 5.20973 5.21660 5.62216 5.67150 5.79954 5.99346 6.18868 6.23008 6.56363 6.59940 6.84028 7.30004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.043 4.043 3 Si 0.791 3.209 4 C -0.008 4.008 5 C -0.173 4.173 6 C -0.257 4.257 7 C 0.590 3.410 8 O -0.587 6.587 9 N -0.700 5.700 10 C 0.112 3.888 11 H 0.085 0.915 12 C -0.134 4.134 13 C -0.108 4.108 14 H 0.087 0.913 15 C 0.136 3.864 16 N -0.376 5.376 17 C 0.051 3.949 18 C -0.293 4.293 19 C 0.026 3.974 20 N -0.330 5.330 21 C -0.118 4.118 22 C 0.108 3.892 23 C -0.053 4.053 24 C -0.125 4.125 25 C -0.133 4.133 26 C 0.094 3.906 27 N -0.423 5.423 28 H 0.395 0.605 29 H 0.113 0.887 30 H -0.290 1.290 31 H -0.276 1.276 32 H 0.160 0.840 33 H 0.409 0.591 34 H 0.090 0.910 35 H 0.048 0.952 36 H 0.129 0.871 37 H 0.089 0.911 38 H 0.205 0.795 39 H 0.160 0.840 40 H 0.193 0.807 41 H 0.089 0.911 42 H 0.118 0.882 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.063 0.937 47 H 0.076 0.924 48 H 0.108 0.892 49 H 0.123 0.877 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.327 2.788 3.408 4.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.153 4.153 3 Si 0.694 3.306 4 C -0.117 4.117 5 C -0.197 4.197 6 C -0.267 4.267 7 C 0.381 3.619 8 O -0.469 6.469 9 N -0.350 5.350 10 C 0.006 3.994 11 H 0.103 0.897 12 C -0.172 4.172 13 C -0.127 4.127 14 H 0.105 0.895 15 C 0.015 3.985 16 N -0.158 5.158 17 C -0.095 4.095 18 C -0.322 4.322 19 C -0.160 4.160 20 N -0.152 5.152 21 C -0.156 4.156 22 C -0.011 4.011 23 C -0.091 4.091 24 C -0.163 4.163 25 C -0.171 4.171 26 C -0.025 4.025 27 N -0.099 5.099 28 H 0.245 0.755 29 H 0.131 0.869 30 H -0.217 1.217 31 H -0.202 1.202 32 H 0.177 0.823 33 H 0.245 0.755 34 H 0.108 0.892 35 H 0.067 0.933 36 H 0.147 0.853 37 H 0.107 0.893 38 H 0.222 0.778 39 H 0.177 0.823 40 H 0.210 0.790 41 H 0.108 0.892 42 H 0.136 0.864 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.108 0.892 46 H 0.082 0.918 47 H 0.094 0.906 48 H 0.127 0.873 49 H 0.140 0.860 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.047 1.104 3.598 3.764 hybrid contribution 0.485 0.462 0.490 0.830 sum 0.532 1.566 4.088 4.410 Atomic orbital electron populations 1.86455 1.17043 1.81516 1.50750 1.24958 0.85131 1.10707 0.94518 0.93134 0.78540 0.74229 0.84719 1.20924 0.95814 0.95343 0.99629 1.21885 0.98604 1.02928 0.96297 1.19931 0.98238 1.06292 1.02228 1.17596 0.81404 0.79662 0.83269 1.90734 1.79769 1.38769 1.37595 1.45343 1.20550 1.37989 1.31153 1.21875 0.87872 0.99259 0.90369 0.89660 1.23348 0.99889 0.96181 0.97830 1.22735 0.96424 0.95425 0.98127 0.89487 1.22045 0.97177 0.77813 1.01423 1.48986 1.20575 1.06946 1.39328 1.23182 1.00510 0.85258 1.00542 1.21850 1.00054 1.01147 1.09136 1.24317 1.00085 0.91499 1.00068 1.77349 1.05256 1.16807 1.15785 1.23292 0.96123 0.93399 1.02831 1.20557 0.91538 0.97860 0.91163 1.20441 0.99487 0.93381 0.95807 1.21706 0.95470 0.97995 1.01121 1.21934 0.99217 0.98772 0.97142 1.22513 0.81926 0.99583 0.98471 1.44053 1.17984 1.26757 1.21099 0.75469 0.86938 1.21703 1.20177 0.82266 0.75527 0.89187 0.93337 0.85266 0.89315 0.77799 0.82282 0.78989 0.89235 0.86395 0.89948 0.90337 0.89198 0.91781 0.90558 0.87348 0.85964 0.90102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.22 10.28 -148.98 -1.53 0.69 16 2 C -0.04 0.11 3.00 71.24 0.21 0.32 16 3 Si 0.79 -3.14 31.30 68.60 2.15 -0.99 16 4 C -0.01 -0.01 6.14 40.99 0.25 0.24 16 5 C -0.17 -0.47 9.09 23.64 0.21 -0.26 16 6 C -0.26 -2.02 6.28 -19.12 -0.12 -2.14 16 7 C 0.59 6.28 7.81 86.62 0.68 6.96 16 8 O -0.59 -10.22 14.93 -4.14 -0.06 -10.29 16 9 N -0.70 -2.94 5.26 -443.44 -2.33 -5.27 16 10 C 0.11 0.28 4.32 45.52 0.20 0.48 16 11 H 0.09 0.58 7.46 -2.39 -0.02 0.56 16 12 C -0.13 -0.38 7.43 31.12 0.23 -0.15 16 13 C -0.11 0.28 3.70 -10.27 -0.04 0.24 16 14 H 0.09 -0.07 8.14 -2.39 -0.02 -0.09 16 15 C 0.14 -0.54 6.35 86.38 0.55 0.01 16 16 N -0.38 -0.87 3.68 -348.06 -1.28 -2.15 16 17 C 0.05 -0.03 11.45 83.54 0.96 0.93 16 18 C -0.29 -0.54 10.80 21.99 0.24 -0.30 16 19 C 0.03 0.13 12.03 85.24 1.03 1.15 16 20 N -0.33 -2.68 12.42 -57.02 -0.71 -3.39 16 21 C -0.12 0.60 7.39 31.12 0.23 0.83 16 22 C 0.11 0.69 6.57 41.69 0.27 0.97 16 23 C -0.05 -0.27 5.32 30.07 0.16 -0.11 16 24 C -0.13 0.13 5.98 30.78 0.18 0.31 16 25 C -0.13 0.60 5.92 30.69 0.18 0.79 16 26 C 0.09 -0.29 6.22 86.33 0.54 0.25 16 27 N -0.42 -0.84 3.11 -493.61 -1.54 -2.38 16 28 H 0.39 -4.30 8.27 -74.06 -0.61 -4.92 16 29 H 0.11 -0.18 7.96 -2.39 -0.02 -0.20 16 30 H -0.29 -0.73 7.11 99.48 0.71 -0.02 16 31 H -0.28 0.07 6.77 99.48 0.67 0.74 16 32 H 0.16 -0.19 6.31 -2.91 -0.02 -0.21 16 33 H 0.41 -0.09 7.83 -92.71 -0.73 -0.82 16 34 H 0.09 0.25 7.90 -2.39 -0.02 0.23 16 35 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.13 -1.35 8.07 -2.39 -0.02 -1.37 16 37 H 0.09 -0.36 7.85 -2.39 -0.02 -0.37 16 38 H 0.21 -1.73 8.06 -2.91 -0.02 -1.76 16 39 H 0.16 -0.32 8.06 -2.91 -0.02 -0.34 16 40 H 0.19 0.08 8.06 -2.91 -0.02 0.05 16 41 H 0.09 -0.59 8.14 -2.38 -0.02 -0.61 16 42 H 0.12 -0.98 8.10 -2.39 -0.02 -1.00 16 43 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.08 0.71 7.40 -2.38 -0.02 0.69 16 45 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 46 H 0.06 -0.01 8.12 -2.38 -0.02 -0.02 16 47 H 0.08 -0.31 8.11 -2.38 -0.02 -0.33 16 48 H 0.11 -0.88 8.14 -2.39 -0.02 -0.90 16 49 H 0.12 -0.76 5.68 -2.39 -0.01 -0.78 16 50 H 0.08 -0.21 8.14 -2.38 -0.02 -0.23 16 Total: 0.00 -24.67 400.88 0.29 -24.38 By element: Atomic # 1 Polarization: -10.76 SS G_CDS: -0.37 Total: -11.13 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: 5.96 Total: 10.52 kcal Atomic # 7 Polarization: -7.33 SS G_CDS: -5.86 Total: -13.18 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: -1.59 Total: -9.60 kcal Atomic # 14 Polarization: -3.14 SS G_CDS: 2.15 Total: -0.99 kcal Total: -24.67 0.29 -24.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_16915396.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.725 kcal (2) G-P(sol) polarization free energy of solvation -24.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds