Wall clock time and date at job start Sun Mar 7 2021 04:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86305 * 109.46851 * 2 1 4 4 C 1.50693 * 109.47246 * 120.00014 * 2 1 3 5 5 C 1.38717 * 120.02742 * 75.22907 * 4 2 1 6 6 O 1.35896 * 120.05449 * 359.97438 * 5 4 2 7 7 C 1.42897 * 116.99891 * 180.25402 * 6 5 4 8 8 C 1.50703 * 109.47339 * 180.02562 * 7 6 5 9 9 O 1.21283 * 119.99957 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00008 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99578 * 179.97438 * 10 8 7 12 12 H 1.09000 * 112.85257 * 25.33213 * 11 10 8 13 13 C 1.53781 * 113.61185 * 156.53125 * 11 10 8 14 14 C 1.53780 * 87.08184 * 89.11569 * 13 11 10 15 15 H 1.08995 * 113.61217 * 270.79592 * 14 13 11 16 16 C 1.53002 * 113.61149 * 139.98372 * 14 13 11 17 17 N 1.46507 * 109.46906 * 174.99946 * 16 14 13 18 18 C 1.34941 * 126.03513 * 124.71253 * 17 16 14 19 19 C 1.35316 * 107.74502 * 179.83930 * 18 17 16 20 20 C 1.39873 * 107.91937 * 0.42276 * 19 18 17 21 21 N 1.30839 * 108.19975 * 359.74182 * 20 19 18 22 22 C 1.53786 * 113.61587 * 254.13692 * 11 10 8 23 23 C 1.38752 * 119.88645 * 180.23115 * 5 4 2 24 24 C 1.38121 * 119.94858 * 359.77071 * 23 5 4 25 25 C 1.38291 * 120.05358 * 0.02562 * 24 23 5 26 26 C 1.38163 * 120.02868 * 254.99655 * 4 2 1 27 27 H 0.96701 * 113.99557 * 299.99732 * 1 2 3 28 28 H 1.08999 * 109.46648 * 240.00558 * 2 1 3 29 29 H 1.48497 * 109.99972 * 300.00091 * 3 2 1 30 30 H 1.48496 * 109.99926 * 61.32149 * 3 2 1 31 31 H 1.09006 * 109.47000 * 299.99262 * 7 6 5 32 32 H 1.08996 * 109.47426 * 59.99493 * 7 6 5 33 33 H 0.97000 * 120.00352 * 0.02562 * 10 8 7 34 34 H 1.09005 * 113.61350 * 203.66450 * 13 11 10 35 35 H 1.09002 * 113.61783 * 334.48186 * 13 11 10 36 36 H 1.09008 * 109.46977 * 294.99456 * 16 14 13 37 37 H 1.09000 * 109.47375 * 54.99951 * 16 14 13 38 38 H 1.08004 * 126.13124 * 359.97438 * 18 17 16 39 39 H 1.08005 * 126.04363 * 180.16119 * 19 18 17 40 40 H 1.07997 * 125.89913 * 179.71512 * 20 19 18 41 41 H 1.08996 * 113.61193 * 25.43181 * 22 11 10 42 42 H 1.09000 * 113.61686 * 156.34184 * 22 11 10 43 43 H 1.07998 * 120.02579 * 179.79079 * 23 5 4 44 44 H 1.08000 * 119.97840 * 179.97438 * 24 23 5 45 45 H 1.07998 * 119.94616 * 179.97438 * 25 24 23 46 46 H 1.08002 * 119.97507 * 0.02749 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.8741 -2.0944 1.3049 6 8 1.3646 -2.8112 0.2689 7 6 1.3317 -4.2321 0.4173 8 6 0.7394 -4.8530 -0.8215 9 8 0.3804 -4.1481 -1.7409 10 7 0.6088 -6.1917 -0.9079 11 6 0.0325 -6.7951 -2.1120 12 1 0.1535 -6.1713 -2.9976 13 6 0.4509 -8.2591 -2.3279 14 6 -0.7718 -8.6511 -1.4817 15 1 -0.5626 -8.7109 -0.4137 16 6 -1.5153 -9.8791 -2.0112 17 7 -2.5848 -10.2423 -1.0781 18 6 -3.8921 -10.3789 -1.3832 19 6 -4.5462 -10.7244 -0.2502 20 6 -3.6078 -10.7921 0.7849 21 7 -2.4317 -10.5032 0.2897 22 6 -1.4018 -7.3138 -1.9152 23 6 2.3330 -2.7451 2.4412 24 6 2.8500 -2.0143 3.4930 25 6 2.9099 -0.6349 3.4145 26 6 2.4538 0.0159 2.2832 27 1 -0.3933 0.4417 0.7651 28 1 1.7923 -0.5138 -0.8900 29 1 1.5614 2.4679 -1.2085 30 1 1.5879 2.4585 1.2242 31 1 2.3454 -4.6059 0.5615 32 1 0.7218 -4.4931 1.2822 33 1 0.8956 -6.7554 -0.1725 34 1 0.3853 -8.5834 -3.3665 35 1 1.4041 -8.5138 -1.8645 36 1 -1.9459 -9.6507 -2.9862 37 1 -0.8188 -10.7120 -2.1075 38 1 -4.3365 -10.2398 -2.3577 39 1 -5.6063 -10.9105 -0.1599 40 1 -3.8179 -11.0396 1.8149 41 1 -1.9440 -6.8061 -1.1175 42 1 -1.9730 -7.3801 -2.8412 43 1 2.2864 -3.8223 2.5030 44 1 3.2069 -2.5203 4.3778 45 1 3.3140 -0.0651 4.2382 46 1 2.5017 1.0933 2.2244 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_2989392.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:36:23 Heat of formation + Delta-G solvation = 42.403344 kcal Electronic energy + Delta-G solvation = -28968.428767 eV Core-core repulsion = 24828.325029 eV Total energy + Delta-G solvation = -4140.103738 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.09936 -41.70288 -41.06472 -39.62310 -38.45626 -37.62694 -35.16957 -33.57005 -32.76507 -31.30473 -30.99318 -29.67598 -28.23299 -26.77872 -26.71175 -24.48196 -23.52918 -22.65724 -22.08202 -21.84126 -21.61709 -20.24023 -19.54016 -18.51889 -18.20953 -18.01572 -17.56196 -17.17980 -16.93202 -16.63197 -16.37447 -16.11648 -15.80278 -15.56099 -15.45129 -15.39694 -15.05160 -14.89267 -14.58966 -14.28820 -14.21105 -13.90425 -13.75918 -13.60242 -13.50289 -13.45503 -13.07819 -12.80009 -12.55474 -12.25971 -12.16573 -11.89924 -11.71508 -11.69533 -11.59196 -11.36272 -11.10341 -10.55478 -10.34807 -10.22576 -9.99450 -9.48096 -9.23905 -4.96553 0.21852 0.40093 0.99456 1.27398 1.33459 1.41842 1.53218 1.66323 1.92224 1.94410 2.53533 2.68352 3.35369 3.42198 3.43805 3.47452 3.51906 3.69603 3.74441 3.85584 3.93163 3.95340 4.00548 4.07611 4.10856 4.19706 4.29764 4.35883 4.38857 4.49974 4.52027 4.61457 4.65802 4.67573 4.71486 4.77129 4.89814 4.93139 4.96576 5.01948 5.11089 5.15400 5.26726 5.36132 5.47473 5.51597 5.74169 5.74937 6.17317 6.22556 6.38788 6.50652 6.77201 7.02762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.084 4.084 3 Si 0.785 3.215 4 C -0.164 4.164 5 C 0.128 3.872 6 O -0.312 6.312 7 C 0.038 3.962 8 C 0.515 3.485 9 O -0.568 6.568 10 N -0.695 5.695 11 C 0.113 3.887 12 H 0.087 0.913 13 C -0.116 4.116 14 C -0.112 4.112 15 H 0.091 0.909 16 C 0.135 3.865 17 N -0.374 5.374 18 C 0.051 3.949 19 C -0.295 4.295 20 C 0.029 3.971 21 N -0.333 5.333 22 C -0.146 4.146 23 C -0.213 4.213 24 C -0.075 4.075 25 C -0.153 4.153 26 C -0.088 4.088 27 H 0.381 0.619 28 H 0.096 0.904 29 H -0.307 1.307 30 H -0.264 1.264 31 H 0.126 0.874 32 H 0.116 0.884 33 H 0.418 0.582 34 H 0.120 0.880 35 H 0.091 0.909 36 H 0.123 0.877 37 H 0.094 0.906 38 H 0.202 0.798 39 H 0.158 0.842 40 H 0.196 0.804 41 H 0.047 0.953 42 H 0.103 0.897 43 H 0.152 0.848 44 H 0.154 0.846 45 H 0.151 0.849 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.121 -4.487 2.979 6.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.192 4.192 3 Si 0.689 3.311 4 C -0.165 4.165 5 C 0.082 3.918 6 O -0.225 6.225 7 C -0.040 4.040 8 C 0.301 3.699 9 O -0.446 6.446 10 N -0.349 5.349 11 C 0.007 3.993 12 H 0.105 0.895 13 C -0.154 4.154 14 C -0.131 4.131 15 H 0.109 0.891 16 C 0.015 3.985 17 N -0.156 5.156 18 C -0.096 4.096 19 C -0.324 4.324 20 C -0.156 4.156 21 N -0.155 5.155 22 C -0.184 4.184 23 C -0.231 4.231 24 C -0.092 4.092 25 C -0.171 4.171 26 C -0.105 4.105 27 H 0.230 0.770 28 H 0.114 0.886 29 H -0.236 1.236 30 H -0.190 1.190 31 H 0.144 0.856 32 H 0.133 0.867 33 H 0.256 0.744 34 H 0.138 0.862 35 H 0.110 0.890 36 H 0.141 0.859 37 H 0.113 0.887 38 H 0.219 0.781 39 H 0.176 0.824 40 H 0.213 0.787 41 H 0.066 0.934 42 H 0.122 0.878 43 H 0.170 0.830 44 H 0.171 0.829 45 H 0.169 0.831 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.034 -3.246 1.729 6.235 hybrid contribution -2.253 -0.723 0.671 2.460 sum 2.781 -3.969 2.400 5.409 Atomic orbital electron populations 1.86652 1.19031 1.80389 1.49659 1.25244 0.83230 1.12578 0.98115 0.94024 0.89796 0.70711 0.76619 1.19715 1.06702 0.91352 0.98688 1.19084 0.94227 0.91153 0.87309 1.86183 1.78228 1.18517 1.39582 1.22670 1.04534 0.80085 0.96738 1.20533 0.78108 0.82906 0.88340 1.90772 1.50156 1.62411 1.41215 1.45386 1.63435 1.05518 1.20518 1.21879 0.94249 0.95163 0.87993 0.89516 1.23288 0.97947 0.91718 1.02469 1.22864 0.96725 0.92761 1.00789 0.89114 1.22073 0.87995 0.97840 0.90624 1.48965 1.07128 1.52750 1.06794 1.23148 0.84414 1.00145 1.01864 1.21860 1.01945 1.15961 0.92625 1.24307 0.90299 0.99501 1.01536 1.77225 1.24030 1.23874 0.90403 1.23577 0.96454 0.96245 1.02147 1.21582 1.05737 1.01756 0.94045 1.21398 0.95435 0.94247 0.98164 1.21413 1.01985 0.95044 0.98670 1.21201 0.96394 1.00545 0.92381 0.77024 0.88603 1.23596 1.19017 0.85615 0.86674 0.74427 0.86155 0.88996 0.85863 0.88739 0.78088 0.82406 0.78717 0.93414 0.87829 0.83007 0.82879 0.83103 0.83531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -6.27 12.88 -148.98 -1.92 -8.19 16 2 C -0.08 -0.62 2.38 71.23 0.17 -0.45 16 3 Si 0.78 1.42 30.25 68.60 2.08 3.50 16 4 C -0.16 -0.83 5.27 -19.77 -0.10 -0.94 16 5 C 0.13 0.71 6.66 22.51 0.15 0.86 16 6 O -0.31 -2.88 9.00 -73.34 -0.66 -3.54 16 7 C 0.04 0.01 5.22 71.24 0.37 0.38 16 8 C 0.51 2.91 7.91 87.66 0.69 3.60 16 9 O -0.57 -9.87 16.12 16.00 0.26 -9.61 16 10 N -0.69 1.22 5.26 -440.03 -2.32 -1.10 16 11 C 0.11 -0.17 4.30 45.52 0.20 0.02 16 12 H 0.09 0.27 7.50 -2.39 -0.02 0.26 16 13 C -0.12 0.93 7.38 31.12 0.23 1.16 16 14 C -0.11 0.56 3.76 -10.17 -0.04 0.53 16 15 H 0.09 -0.15 7.96 -2.39 -0.02 -0.17 16 16 C 0.13 -0.73 6.35 86.38 0.55 -0.18 16 17 N -0.37 -0.53 3.68 -348.03 -1.28 -1.81 16 18 C 0.05 -0.01 11.45 83.54 0.96 0.94 16 19 C -0.29 -0.56 10.80 21.99 0.24 -0.32 16 20 C 0.03 0.12 12.03 85.24 1.03 1.14 16 21 N -0.33 -2.16 12.27 -57.02 -0.70 -2.86 16 22 C -0.15 0.26 7.45 31.21 0.23 0.50 16 23 C -0.21 0.12 9.04 22.36 0.20 0.32 16 24 C -0.07 0.21 10.04 22.25 0.22 0.43 16 25 C -0.15 0.34 10.04 22.29 0.22 0.57 16 26 C -0.09 -0.03 8.66 22.26 0.19 0.16 16 27 H 0.38 1.49 8.70 -74.06 -0.64 0.84 16 28 H 0.10 1.02 7.82 -2.39 -0.02 1.00 16 29 H -0.31 -3.08 7.11 99.48 0.71 -2.37 16 30 H -0.26 -0.62 6.68 99.48 0.66 0.05 16 31 H 0.13 -0.85 7.66 -2.38 -0.02 -0.87 16 32 H 0.12 -0.55 7.66 -2.39 -0.02 -0.57 16 33 H 0.42 -3.42 8.70 -92.71 -0.81 -4.22 16 34 H 0.12 -1.35 8.10 -2.38 -0.02 -1.37 16 35 H 0.09 -0.87 8.14 -2.39 -0.02 -0.89 16 36 H 0.12 -1.30 7.78 -2.38 -0.02 -1.32 16 37 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 38 H 0.20 -1.53 8.06 -2.91 -0.02 -1.56 16 39 H 0.16 -0.25 8.06 -2.91 -0.02 -0.27 16 40 H 0.20 -0.18 8.06 -2.91 -0.02 -0.20 16 41 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 42 H 0.10 -0.41 7.90 -2.39 -0.02 -0.43 16 43 H 0.15 -0.96 6.30 -2.91 -0.02 -0.98 16 44 H 0.15 -1.23 8.06 -2.91 -0.02 -1.25 16 45 H 0.15 -1.06 8.06 -2.91 -0.02 -1.08 16 46 H 0.15 -0.44 4.86 -2.91 -0.01 -0.45 16 Total: 0.00 -31.77 387.63 0.53 -31.24 By element: Atomic # 1 Polarization: -15.92 SS G_CDS: -0.44 Total: -16.35 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 5.51 Total: 8.73 kcal Atomic # 7 Polarization: -1.48 SS G_CDS: -4.30 Total: -5.77 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -2.32 Total: -21.34 kcal Atomic # 14 Polarization: 1.42 SS G_CDS: 2.08 Total: 3.50 kcal Total: -31.77 0.53 -31.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_2989392.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.640 kcal (2) G-P(sol) polarization free energy of solvation -31.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds