Wall clock time and date at job start Sun Mar 7 2021 04:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86305 * 109.46727 * 2 1 4 4 C 1.50702 * 109.47541 * 239.99909 * 2 1 3 5 5 C 1.38258 * 119.94378 * 299.99944 * 4 2 1 6 6 C 1.38143 * 120.05694 * 179.97438 * 5 4 2 7 7 C 1.38726 * 119.94127 * 0.02562 * 6 5 4 8 8 O 1.35907 * 120.05262 * 179.97438 * 7 6 5 9 9 C 1.42903 * 116.99663 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.46916 * 179.97438 * 9 8 7 11 11 O 1.21277 * 119.99882 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00208 * 179.97438 * 10 9 8 13 13 C 1.46493 * 120.00517 * 179.97438 * 12 10 9 14 14 H 1.09005 * 112.84745 * 23.80541 * 13 12 10 15 15 C 1.53777 * 113.61721 * 154.99924 * 13 12 10 16 16 C 1.53786 * 87.08054 * 89.11825 * 15 13 12 17 17 H 1.09000 * 113.61459 * 270.80074 * 16 15 13 18 18 C 1.53005 * 113.61359 * 139.97989 * 16 15 13 19 19 N 1.46503 * 109.47104 * 176.52918 * 18 16 15 20 20 C 1.34939 * 126.03492 * 124.99889 * 19 18 16 21 21 C 1.35315 * 107.74580 * 179.97438 * 20 19 18 22 22 C 1.39870 * 107.92072 * 0.02562 * 21 20 19 23 23 N 1.30839 * 108.20307 * 359.97438 * 22 21 20 24 24 C 1.53784 * 87.17221 * 25.39240 * 16 15 13 25 25 C 1.38731 * 119.89191 * 0.27004 * 7 6 5 26 26 C 1.38148 * 119.94177 * 359.47220 * 25 7 6 27 27 H 0.96707 * 113.99914 * 60.00666 * 1 2 3 28 28 H 1.08998 * 109.46915 * 119.99643 * 2 1 3 29 29 H 1.48498 * 110.00200 * 298.67534 * 3 2 1 30 30 H 1.48498 * 109.99943 * 60.00121 * 3 2 1 31 31 H 1.08007 * 119.97121 * 359.97438 * 5 4 2 32 32 H 1.08000 * 120.02993 * 179.97438 * 6 5 4 33 33 H 1.08997 * 109.47443 * 60.00297 * 9 8 7 34 34 H 1.08998 * 109.47204 * 299.99753 * 9 8 7 35 35 H 0.97008 * 119.99695 * 0.02562 * 12 10 9 36 36 H 1.09001 * 113.61480 * 334.57141 * 15 13 12 37 37 H 1.08999 * 113.61640 * 203.66541 * 15 13 12 38 38 H 1.09003 * 109.46768 * 56.52938 * 18 16 15 39 39 H 1.09004 * 109.47031 * 296.53179 * 18 16 15 40 40 H 1.07999 * 126.13245 * 0.02562 * 20 19 18 41 41 H 1.07999 * 126.04347 * 179.73376 * 21 20 19 42 42 H 1.08001 * 125.90246 * 179.97438 * 22 21 20 43 43 H 1.08998 * 113.61606 * 89.15712 * 24 16 15 44 44 H 1.09000 * 113.61238 * 220.06445 * 24 16 15 45 45 H 1.08004 * 120.02915 * 179.72328 * 25 7 6 46 46 H 1.08001 * 119.97273 * 180.27846 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9315 -0.7104 -1.2304 5 6 1.5968 -2.0341 -1.4481 6 6 2.0557 -2.6874 -2.5754 7 6 2.8533 -2.0143 -3.4893 8 8 3.3064 -2.6550 -4.5989 9 6 4.1224 -1.8996 -5.4964 10 6 4.5280 -2.7686 -6.6589 11 8 4.1554 -3.9215 -6.7131 12 7 5.3049 -2.2648 -7.6382 13 6 5.6997 -3.1096 -8.7679 14 1 5.0138 -3.9402 -8.9353 15 6 6.0305 -2.3174 -10.0437 16 6 7.4768 -2.2408 -9.5268 17 1 7.6693 -1.3738 -8.8948 18 6 8.5296 -2.4233 -10.6219 19 7 9.8664 -2.2522 -10.0476 20 6 10.8805 -3.1396 -10.1189 21 6 11.9404 -2.6079 -9.4669 22 6 11.5607 -1.3529 -8.9799 23 7 10.3177 -1.1385 -9.3276 24 6 7.1815 -3.5262 -8.7359 25 6 3.1928 -0.6879 -3.2656 26 6 2.7270 -0.0375 -2.1393 27 1 -0.3933 0.4416 -0.7652 28 1 1.7923 -0.5138 0.8900 29 1 1.5879 2.4586 -1.2243 30 1 1.5614 2.4679 1.2085 31 1 0.9761 -2.5578 -0.7360 32 1 1.7943 -3.7216 -2.7448 33 1 5.0140 -1.5538 -4.9734 34 1 3.5603 -1.0408 -5.8632 35 1 5.6032 -1.3427 -7.5946 36 1 5.5340 -1.3484 -10.0970 37 1 5.9242 -2.8995 -10.9591 38 1 8.3724 -1.6807 -11.4043 39 1 8.4420 -3.4232 -11.0471 40 1 10.8519 -4.1014 -10.6093 41 1 12.9070 -3.0727 -9.3404 42 1 12.1856 -0.6774 -8.4145 43 1 7.3904 -4.4394 -9.2930 44 1 7.6128 -3.5318 -7.7349 45 1 3.8173 -0.1631 -3.9733 46 1 2.9872 0.9964 -1.9669 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_2989410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:36:27 Heat of formation + Delta-G solvation = 39.848077 kcal Electronic energy + Delta-G solvation = -28284.315850 eV Core-core repulsion = 24144.101307 eV Total energy + Delta-G solvation = -4140.214543 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.07292 -41.65299 -41.01403 -39.69904 -38.86829 -37.25005 -35.14808 -33.54361 -32.39816 -31.76053 -30.98765 -29.84789 -28.25727 -26.74976 -26.25394 -24.48674 -23.86458 -22.55073 -22.02717 -21.82506 -21.59022 -20.20700 -19.52503 -18.56611 -18.32942 -18.01408 -17.50371 -17.21820 -16.84784 -16.47612 -16.34810 -16.16033 -15.78820 -15.59123 -15.50096 -15.39439 -14.92850 -14.64275 -14.56702 -14.38432 -14.26899 -13.87806 -13.77089 -13.60538 -13.50256 -13.47428 -13.41622 -12.78617 -12.31784 -12.22574 -12.16362 -12.08985 -11.67423 -11.65067 -11.56185 -11.34232 -11.08867 -10.60225 -10.31776 -10.20171 -10.05754 -9.45361 -9.26048 -4.91344 0.25127 0.28858 1.02220 1.33046 1.35573 1.41895 1.60754 1.68801 1.97214 1.97759 2.53786 2.62960 3.39116 3.42360 3.45152 3.50135 3.54190 3.71442 3.77031 3.79936 3.92036 3.97887 3.99381 4.05121 4.10338 4.22638 4.28924 4.40290 4.41785 4.52380 4.54733 4.64092 4.68144 4.70513 4.74159 4.80180 4.92638 4.95464 4.96354 5.04722 5.13365 5.14165 5.18215 5.23464 5.47479 5.49948 5.67680 5.77714 6.19915 6.21834 6.39380 6.49843 6.79988 7.04587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.082 4.082 3 Si 0.770 3.230 4 C -0.158 4.158 5 C -0.060 4.060 6 C -0.166 4.166 7 C 0.120 3.880 8 O -0.319 6.319 9 C 0.037 3.963 10 C 0.515 3.485 11 O -0.570 6.570 12 N -0.695 5.695 13 C 0.113 3.887 14 H 0.088 0.912 15 C -0.118 4.118 16 C -0.113 4.113 17 H 0.092 0.908 18 C 0.134 3.866 19 N -0.374 5.374 20 C 0.051 3.949 21 C -0.295 4.295 22 C 0.029 3.971 23 N -0.332 5.332 24 C -0.144 4.144 25 C -0.201 4.201 26 C -0.075 4.075 27 H 0.386 0.614 28 H 0.122 0.878 29 H -0.278 1.278 30 H -0.307 1.307 31 H 0.134 0.866 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.419 0.581 36 H 0.090 0.910 37 H 0.119 0.881 38 H 0.093 0.907 39 H 0.123 0.877 40 H 0.202 0.798 41 H 0.158 0.842 42 H 0.196 0.804 43 H 0.103 0.897 44 H 0.050 0.950 45 H 0.163 0.837 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.675 3.530 -4.560 7.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.190 4.190 3 Si 0.675 3.325 4 C -0.158 4.158 5 C -0.078 4.078 6 C -0.184 4.184 7 C 0.075 3.925 8 O -0.233 6.233 9 C -0.041 4.041 10 C 0.302 3.698 11 O -0.449 6.449 12 N -0.348 5.348 13 C 0.007 3.993 14 H 0.106 0.894 15 C -0.156 4.156 16 C -0.132 4.132 17 H 0.110 0.890 18 C 0.014 3.986 19 N -0.156 5.156 20 C -0.096 4.096 21 C -0.324 4.324 22 C -0.156 4.156 23 N -0.155 5.155 24 C -0.183 4.183 25 C -0.219 4.219 26 C -0.093 4.093 27 H 0.235 0.765 28 H 0.140 0.860 29 H -0.205 1.205 30 H -0.236 1.236 31 H 0.152 0.848 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.257 0.743 36 H 0.109 0.891 37 H 0.137 0.863 38 H 0.111 0.889 39 H 0.141 0.859 40 H 0.219 0.781 41 H 0.175 0.825 42 H 0.213 0.787 43 H 0.121 0.879 44 H 0.069 0.931 45 H 0.181 0.819 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.125 3.811 -4.153 6.445 hybrid contribution -0.189 -0.505 -0.301 0.617 sum 2.936 3.307 -4.454 6.276 Atomic orbital electron populations 1.86570 1.18784 1.80401 1.50168 1.25234 0.83270 1.11986 0.98524 0.94139 0.90204 0.71705 0.76406 1.20297 1.01992 0.95183 0.98377 1.20912 0.97119 0.94023 0.95723 1.20623 1.01492 1.01299 0.95034 1.19225 0.94716 0.92022 0.86559 1.86128 1.65113 1.40270 1.31750 1.22726 0.97718 0.94229 0.89419 1.20547 0.77922 0.87572 0.83779 1.90760 1.55783 1.20120 1.78197 1.45393 1.51205 1.16354 1.21888 1.21916 0.95967 0.94703 0.86703 0.89406 1.23299 0.93421 1.01956 0.96955 1.22820 0.94409 0.98761 0.97178 0.89005 1.22065 0.76180 1.04922 0.95395 1.48955 1.11752 1.12808 1.42084 1.23139 0.88203 0.97425 1.00802 1.21855 1.02112 0.98138 1.10293 1.24304 0.93165 0.97996 1.00152 1.77230 1.14048 1.08845 1.15354 1.23544 0.95552 0.98576 1.00611 1.21492 1.05787 0.93297 1.01330 1.21065 0.95352 1.00174 0.92680 0.76522 0.86039 1.20480 1.23552 0.84774 0.85532 0.85757 0.85570 0.74339 0.89105 0.86299 0.88917 0.85888 0.78114 0.82450 0.78728 0.87904 0.93099 0.81939 0.82956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.63 12.77 -148.98 -1.90 -3.53 16 2 C -0.08 0.05 2.82 71.24 0.20 0.25 16 3 Si 0.77 -2.22 29.78 68.60 2.04 -0.17 16 4 C -0.16 -0.04 5.39 -19.85 -0.11 -0.15 16 5 C -0.06 -0.17 9.60 22.25 0.21 0.04 16 6 C -0.17 -0.83 9.99 22.36 0.22 -0.61 16 7 C 0.12 0.44 6.69 22.50 0.15 0.59 16 8 O -0.32 -1.98 9.67 -73.46 -0.71 -2.69 16 9 C 0.04 -0.10 5.22 71.24 0.37 0.27 16 10 C 0.52 1.51 7.91 87.66 0.69 2.20 16 11 O -0.57 -8.23 16.10 16.02 0.26 -7.97 16 12 N -0.69 2.73 5.26 -439.77 -2.31 0.42 16 13 C 0.11 -0.38 4.33 45.58 0.20 -0.18 16 14 H 0.09 0.12 7.46 -2.38 -0.02 0.10 16 15 C -0.12 1.09 7.39 31.12 0.23 1.32 16 16 C -0.11 0.73 3.73 -10.26 -0.04 0.69 16 17 H 0.09 -0.30 7.99 -2.39 -0.02 -0.32 16 18 C 0.13 -0.87 6.33 86.38 0.55 -0.33 16 19 N -0.37 -0.10 3.68 -348.05 -1.28 -1.38 16 20 C 0.05 -0.07 11.45 83.54 0.96 0.89 16 21 C -0.29 -0.27 10.80 21.99 0.24 -0.03 16 22 C 0.03 0.09 12.03 85.24 1.02 1.11 16 23 N -0.33 -1.78 12.29 -57.02 -0.70 -2.48 16 24 C -0.14 0.53 7.44 31.18 0.23 0.77 16 25 C -0.20 0.45 9.04 22.37 0.20 0.66 16 26 C -0.08 0.20 8.66 22.25 0.19 0.39 16 27 H 0.39 -1.03 8.70 -74.05 -0.64 -1.67 16 28 H 0.12 -0.21 7.96 -2.39 -0.02 -0.23 16 29 H -0.28 -0.03 7.11 99.48 0.71 0.68 16 30 H -0.31 -1.69 7.11 99.48 0.71 -0.99 16 31 H 0.13 0.26 8.06 -2.91 -0.02 0.24 16 32 H 0.13 0.70 8.06 -2.91 -0.02 0.68 16 33 H 0.12 -1.10 7.65 -2.39 -0.02 -1.12 16 34 H 0.13 -1.18 7.68 -2.39 -0.02 -1.20 16 35 H 0.42 -4.32 8.70 -92.70 -0.81 -5.13 16 36 H 0.09 -0.95 8.14 -2.39 -0.02 -0.97 16 37 H 0.12 -1.45 8.10 -2.39 -0.02 -1.47 16 38 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 39 H 0.12 -1.43 7.80 -2.38 -0.02 -1.45 16 40 H 0.20 -1.74 8.06 -2.91 -0.02 -1.76 16 41 H 0.16 -0.39 8.06 -2.91 -0.02 -0.42 16 42 H 0.20 -0.37 8.06 -2.91 -0.02 -0.39 16 43 H 0.10 -0.58 7.92 -2.39 -0.02 -0.60 16 44 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 45 H 0.16 -1.52 6.30 -2.91 -0.02 -1.53 16 46 H 0.15 -1.16 4.87 -2.91 -0.01 -1.18 16 Total: 0.00 -29.86 388.43 0.53 -29.33 By element: Atomic # 1 Polarization: -19.00 SS G_CDS: -0.39 Total: -19.40 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 5.53 Total: 7.88 kcal Atomic # 7 Polarization: 0.84 SS G_CDS: -4.29 Total: -3.45 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: -2.35 Total: -14.19 kcal Atomic # 14 Polarization: -2.22 SS G_CDS: 2.04 Total: -0.17 kcal Total: -29.86 0.53 -29.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_2989410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.178 kcal (2) G-P(sol) polarization free energy of solvation -29.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds