Wall clock time and date at job start Sun Mar 7 2021 04:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86299 * 109.47004 * 2 1 4 4 C 1.50706 * 109.47147 * 240.00515 * 2 1 3 5 5 C 1.38263 * 119.94672 * 119.72205 * 4 2 1 6 6 C 1.38143 * 120.05579 * 179.72304 * 5 4 2 7 7 C 1.38733 * 119.94210 * 0.57301 * 6 5 4 8 8 O 1.35904 * 120.05704 * 179.67609 * 7 6 5 9 9 C 1.42900 * 116.99600 * 0.02656 * 8 7 6 10 10 C 1.53002 * 109.46747 * 179.97438 * 9 8 7 11 11 C 1.50705 * 109.46839 * 179.97438 * 10 9 8 12 12 O 1.21276 * 120.00124 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99917 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00325 * 180.02562 * 13 11 10 15 15 H 1.09002 * 112.84480 * 23.80254 * 14 13 11 16 16 C 1.53774 * 113.61887 * 154.99763 * 14 13 11 17 17 C 1.53776 * 87.08056 * 89.11539 * 16 14 13 18 18 H 1.09000 * 113.62163 * 270.88202 * 17 16 14 19 19 C 1.53002 * 113.61543 * 139.98034 * 17 16 14 20 20 N 1.46500 * 109.47272 * 175.00093 * 19 17 16 21 21 C 1.34950 * 126.03369 * 125.00428 * 20 19 17 22 22 C 1.35320 * 107.74068 * 179.97438 * 21 20 19 23 23 C 1.39869 * 107.92393 * 359.97438 * 22 21 20 24 24 N 1.30839 * 108.20075 * 359.74515 * 23 22 21 25 25 C 1.53777 * 113.61497 * 252.49925 * 14 13 11 26 26 C 1.38737 * 119.89046 * 359.70242 * 7 6 5 27 27 C 1.38141 * 119.94063 * 0.02562 * 26 7 6 28 28 H 0.96700 * 114.00205 * 299.99223 * 1 2 3 29 29 H 1.09001 * 109.47626 * 120.00659 * 2 1 3 30 30 H 1.48494 * 110.00213 * 300.00024 * 3 2 1 31 31 H 1.48501 * 109.99913 * 61.32272 * 3 2 1 32 32 H 1.08001 * 119.97259 * 359.97438 * 5 4 2 33 33 H 1.07992 * 120.02912 * 180.24892 * 6 5 4 34 34 H 1.08995 * 109.47478 * 299.99538 * 9 8 7 35 35 H 1.08998 * 109.47227 * 59.99807 * 9 8 7 36 36 H 1.08995 * 109.47172 * 300.00237 * 10 9 8 37 37 H 1.08998 * 109.46998 * 60.00177 * 10 9 8 38 38 H 0.97005 * 119.99606 * 359.97438 * 13 11 10 39 39 H 1.09004 * 113.61814 * 203.66723 * 16 14 13 40 40 H 1.09006 * 113.61327 * 334.48878 * 16 14 13 41 41 H 1.09000 * 109.47312 * 295.00748 * 19 17 16 42 42 H 1.09003 * 109.46828 * 55.00265 * 19 17 16 43 43 H 1.07994 * 126.12801 * 359.95145 * 21 20 19 44 44 H 1.08003 * 126.03653 * 179.97438 * 22 21 20 45 45 H 1.08000 * 125.89979 * 179.97438 * 23 22 21 46 46 H 1.09000 * 113.61675 * 25.42586 * 25 14 13 47 47 H 1.09000 * 113.61747 * 156.33099 * 25 14 13 48 48 H 1.07994 * 120.02869 * 180.02562 * 26 7 6 49 49 H 1.07998 * 119.97159 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2306 5 6 2.7214 -0.0356 -2.1428 6 6 3.1878 -0.6861 -3.2687 7 6 2.8530 -2.0142 -3.4896 8 8 3.3052 -2.6545 -4.5998 9 6 4.1217 -1.8992 -5.4970 10 6 4.5323 -2.7812 -6.6779 11 6 5.3929 -1.9845 -7.6244 12 8 5.6525 -0.8256 -7.3784 13 7 5.8739 -2.5598 -8.7443 14 6 6.7108 -1.7856 -9.6641 15 1 7.2081 -0.9457 -9.1788 16 6 7.6541 -2.6514 -10.5158 17 6 6.5146 -2.7420 -11.5444 18 1 5.8381 -3.5796 -11.3741 19 6 6.9897 -2.6458 -12.9956 20 7 5.8546 -2.8610 -13.8963 21 6 5.4484 -2.0256 -14.8752 22 6 4.3719 -2.5852 -15.4746 23 6 4.1117 -3.8045 -14.8407 24 7 5.0034 -3.9736 -13.8983 25 6 6.0003 -1.4093 -10.9750 26 6 2.0554 -2.6874 -2.5756 27 6 1.5962 -2.0340 -1.4485 28 1 -0.3933 0.4416 0.7651 29 1 1.7924 -0.5139 0.8899 30 1 1.5614 2.4679 -1.2084 31 1 1.5878 2.4585 1.2243 32 1 2.9774 0.9998 -1.9730 33 1 3.8082 -0.1598 -3.9789 34 1 3.5603 -1.0397 -5.8630 35 1 5.0137 -1.5546 -4.9739 36 1 5.0938 -3.6405 -6.3116 37 1 3.6405 -3.1261 -7.2011 38 1 5.6664 -3.4868 -8.9408 39 1 8.5298 -2.1143 -10.8804 40 1 7.9050 -3.6068 -10.0549 41 1 7.4133 -1.6575 -13.1745 42 1 7.7492 -3.4055 -13.1803 43 1 5.9011 -1.0798 -15.1336 44 1 3.8125 -2.1645 -16.2971 45 1 3.3149 -4.4899 -15.0890 46 1 4.9150 -1.3625 -10.8855 47 1 6.4238 -0.5326 -11.4651 48 1 1.7938 -3.7214 -2.7452 49 1 0.9756 -2.5577 -0.7365 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688104_4549602.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:36:32 Heat of formation + Delta-G solvation = 32.457367 kcal Electronic energy + Delta-G solvation = -29837.679504 eV Core-core repulsion = 25541.606857 eV Total energy + Delta-G solvation = -4296.072647 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.11337 -41.47166 -41.07341 -39.68677 -38.95309 -37.30082 -35.13620 -33.76955 -33.07931 -31.93839 -31.45006 -30.97611 -28.67388 -26.94376 -26.60036 -25.63740 -24.28110 -23.40392 -22.12134 -21.97483 -21.66861 -21.54784 -20.28677 -19.47909 -18.49298 -18.34695 -17.90668 -17.48406 -17.28662 -17.00636 -16.69815 -16.52130 -16.01816 -15.86586 -15.64031 -15.55144 -15.36197 -14.81669 -14.71966 -14.54141 -14.35787 -14.28314 -14.21042 -13.94857 -13.82820 -13.66247 -13.61191 -13.58748 -13.01885 -12.84053 -12.79242 -12.37368 -12.33654 -11.93615 -11.78302 -11.70565 -11.60435 -11.59614 -11.46451 -11.04674 -10.45482 -10.31833 -10.20224 -9.92554 -9.47833 -9.08975 -4.93826 0.39108 0.42428 0.99713 1.32103 1.46110 1.56304 1.61763 1.64792 1.98282 1.98745 2.42773 2.72025 3.21357 3.31217 3.36598 3.38953 3.48910 3.60545 3.81026 3.81962 3.85271 3.87639 3.88718 3.93649 4.02477 4.05403 4.27013 4.28221 4.32949 4.34716 4.40013 4.47477 4.47537 4.49854 4.58903 4.62728 4.65626 4.68678 4.80253 4.83726 4.84880 4.90557 5.01290 5.05163 5.13804 5.28122 5.38415 5.41087 5.60893 5.75870 5.79902 6.08808 6.28605 6.41779 6.48118 6.80369 7.04398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.070 4.070 3 Si 0.678 3.322 4 C -0.112 4.112 5 C -0.073 4.073 6 C -0.202 4.202 7 C 0.137 3.863 8 O -0.316 6.316 9 C 0.074 3.926 10 C -0.142 4.142 11 C 0.524 3.476 12 O -0.536 6.536 13 N -0.712 5.712 14 C 0.121 3.879 15 H 0.108 0.892 16 C -0.137 4.137 17 C -0.123 4.123 18 H 0.105 0.895 19 C 0.142 3.858 20 N -0.370 5.370 21 C 0.052 3.948 22 C -0.275 4.275 23 C 0.044 3.956 24 N -0.297 5.297 25 C -0.146 4.146 26 C -0.150 4.150 27 C -0.052 4.052 28 H 0.379 0.621 29 H 0.076 0.924 30 H -0.256 1.256 31 H -0.261 1.261 32 H 0.129 0.871 33 H 0.135 0.865 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.404 0.596 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.172 0.828 44 H 0.147 0.853 45 H 0.182 0.818 46 H 0.072 0.928 47 H 0.093 0.907 48 H 0.134 0.866 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.148 -0.748 -1.083 4.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.180 4.180 3 Si 0.579 3.421 4 C -0.112 4.112 5 C -0.091 4.091 6 C -0.220 4.220 7 C 0.091 3.909 8 O -0.230 6.230 9 C -0.002 4.002 10 C -0.182 4.182 11 C 0.311 3.689 12 O -0.412 6.412 13 N -0.363 5.363 14 C 0.016 3.984 15 H 0.126 0.874 16 C -0.176 4.176 17 C -0.142 4.142 18 H 0.123 0.877 19 C 0.021 3.979 20 N -0.153 5.153 21 C -0.094 4.094 22 C -0.305 4.305 23 C -0.142 4.142 24 N -0.119 5.119 25 C -0.185 4.185 26 C -0.169 4.169 27 C -0.070 4.070 28 H 0.227 0.773 29 H 0.093 0.907 30 H -0.180 1.180 31 H -0.187 1.187 32 H 0.147 0.853 33 H 0.153 0.847 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.239 0.761 39 H 0.119 0.881 40 H 0.099 0.901 41 H 0.116 0.884 42 H 0.105 0.895 43 H 0.189 0.811 44 H 0.164 0.836 45 H 0.199 0.801 46 H 0.091 0.909 47 H 0.111 0.889 48 H 0.152 0.848 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.742 -0.308 -0.502 4.778 hybrid contribution -1.484 0.141 -0.495 1.571 sum 3.258 -0.167 -0.997 3.411 Atomic orbital electron populations 1.86592 1.17986 1.80112 1.49724 1.24715 0.84288 1.10701 0.98270 0.95133 0.91807 0.74861 0.80254 1.19155 1.00921 0.94658 0.96510 1.20733 0.96423 0.99016 0.92913 1.21231 1.05911 0.94357 1.00545 1.18976 0.94162 0.91030 0.86699 1.85974 1.65107 1.40419 1.31470 1.22418 0.94775 0.93813 0.89169 1.21469 1.01348 0.99930 0.95419 1.20309 0.79806 0.87444 0.81370 1.90752 1.58569 1.17183 1.74692 1.45627 1.52415 1.15736 1.22554 1.21787 0.91903 0.95453 0.89269 0.87440 1.23347 0.97117 1.01239 0.95883 1.22978 0.98978 0.99794 0.92498 0.87673 1.21785 0.85323 1.02995 0.87779 1.48710 1.24818 1.15074 1.26664 1.22596 0.97715 0.97352 0.91735 1.21561 1.02628 0.98760 1.07507 1.23923 0.98402 0.97598 0.94268 1.77314 1.04890 1.06789 1.22858 1.23519 1.01641 0.97077 0.96263 1.20478 1.00928 1.01078 0.94421 1.20798 0.96604 0.93565 0.96049 0.77341 0.90656 1.18034 1.18660 0.85332 0.84718 0.90910 0.90753 0.87321 0.87426 0.76081 0.88117 0.90099 0.88397 0.89508 0.81063 0.83551 0.80074 0.90914 0.88901 0.84839 0.85033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.00 12.74 -35.23 -0.45 -1.44 16 2 C -0.07 -0.05 2.81 36.01 0.10 0.05 16 3 Si 0.68 -0.06 29.78 -169.99 -5.06 -5.13 16 4 C -0.11 -0.24 5.42 -104.60 -0.57 -0.81 16 5 C -0.07 -0.13 8.66 -39.61 -0.34 -0.47 16 6 C -0.20 -0.40 9.04 -39.43 -0.36 -0.76 16 7 C 0.14 0.36 6.69 -39.21 -0.26 0.10 16 8 O -0.32 -0.65 10.14 -19.44 -0.20 -0.84 16 9 C 0.07 0.03 4.03 37.16 0.15 0.18 16 10 C -0.14 0.23 6.07 -27.88 -0.17 0.06 16 11 C 0.52 0.14 7.83 -10.98 -0.09 0.06 16 12 O -0.54 -2.21 15.58 5.56 0.09 -2.12 16 13 N -0.71 1.31 5.26 -53.02 -0.28 1.03 16 14 C 0.12 -0.21 4.32 -67.13 -0.29 -0.50 16 15 H 0.11 -0.02 7.46 -51.93 -0.39 -0.41 16 16 C -0.14 0.51 7.39 -25.92 -0.19 0.32 16 17 C -0.12 0.31 3.75 -89.81 -0.34 -0.03 16 18 H 0.11 -0.10 7.97 -51.93 -0.41 -0.51 16 19 C 0.14 -0.33 6.34 -4.04 -0.03 -0.35 16 20 N -0.37 -0.27 3.68 -61.36 -0.23 -0.50 16 21 C 0.05 0.00 11.45 -17.22 -0.20 -0.20 16 22 C -0.28 -0.22 10.80 -40.01 -0.43 -0.65 16 23 C 0.04 0.07 12.03 -17.36 -0.21 -0.14 16 24 N -0.30 -0.88 12.28 30.62 0.38 -0.50 16 25 C -0.15 0.26 7.43 -25.92 -0.19 0.07 16 26 C -0.15 -0.33 9.99 -39.43 -0.39 -0.73 16 27 C -0.05 -0.11 9.60 -39.61 -0.38 -0.49 16 28 H 0.38 -0.82 8.74 45.56 0.40 -0.42 16 29 H 0.08 -0.08 7.96 -51.93 -0.41 -0.50 16 30 H -0.26 -0.82 7.11 56.52 0.40 -0.42 16 31 H -0.26 -0.46 7.11 56.52 0.40 -0.06 16 32 H 0.13 -0.01 4.87 -52.49 -0.26 -0.27 16 33 H 0.14 0.09 6.30 -52.49 -0.33 -0.24 16 34 H 0.07 0.07 7.62 -51.93 -0.40 -0.32 16 35 H 0.07 0.04 7.62 -51.93 -0.40 -0.36 16 36 H 0.11 -0.35 8.14 -51.93 -0.42 -0.77 16 37 H 0.11 -0.29 8.14 -51.93 -0.42 -0.71 16 38 H 0.40 -1.60 8.70 -40.82 -0.36 -1.95 16 39 H 0.10 -0.49 8.10 -51.93 -0.42 -0.91 16 40 H 0.08 -0.31 8.14 -51.93 -0.42 -0.74 16 41 H 0.10 -0.44 7.77 -51.93 -0.40 -0.84 16 42 H 0.09 -0.23 8.14 -51.93 -0.42 -0.65 16 43 H 0.17 -0.55 8.06 -52.49 -0.42 -0.97 16 44 H 0.15 -0.13 8.06 -52.48 -0.42 -0.56 16 45 H 0.18 -0.16 8.06 -52.49 -0.42 -0.58 16 46 H 0.07 0.02 8.14 -51.93 -0.42 -0.41 16 47 H 0.09 -0.24 7.90 -51.93 -0.41 -0.65 16 48 H 0.13 0.11 8.06 -52.49 -0.42 -0.31 16 49 H 0.13 0.12 8.06 -52.49 -0.42 -0.30 16 LS Contribution 409.35 15.07 6.17 6.17 Total: 0.00 -10.50 409.35 -10.97 -21.47 By element: Atomic # 1 Polarization: -6.64 SS G_CDS: -7.21 Total: -13.85 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -4.18 Total: -4.29 kcal Atomic # 7 Polarization: 0.16 SS G_CDS: -0.13 Total: 0.03 kcal Atomic # 8 Polarization: -3.85 SS G_CDS: -0.56 Total: -4.41 kcal Atomic # 14 Polarization: -0.06 SS G_CDS: -5.06 Total: -5.13 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -10.50 -10.97 -21.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_4549602.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.928 kcal (2) G-P(sol) polarization free energy of solvation -10.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds