Wall clock time and date at job start Sun Mar 7 2021 04:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86299 * 109.47004 * 2 1 4 4 C 1.50706 * 109.47147 * 240.00515 * 2 1 3 5 5 C 1.38263 * 119.94672 * 119.72205 * 4 2 1 6 6 C 1.38143 * 120.05579 * 179.72304 * 5 4 2 7 7 C 1.38733 * 119.94210 * 0.57301 * 6 5 4 8 8 O 1.35904 * 120.05704 * 179.67609 * 7 6 5 9 9 C 1.42900 * 116.99600 * 0.02656 * 8 7 6 10 10 C 1.53002 * 109.46747 * 179.97438 * 9 8 7 11 11 C 1.50705 * 109.46839 * 179.97438 * 10 9 8 12 12 O 1.21276 * 120.00124 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99917 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00325 * 180.02562 * 13 11 10 15 15 H 1.09002 * 112.84480 * 23.80254 * 14 13 11 16 16 C 1.53774 * 113.61887 * 154.99763 * 14 13 11 17 17 C 1.53776 * 87.08056 * 89.11539 * 16 14 13 18 18 H 1.09000 * 113.62163 * 270.88202 * 17 16 14 19 19 C 1.53002 * 113.61543 * 139.98034 * 17 16 14 20 20 N 1.46500 * 109.47272 * 175.00093 * 19 17 16 21 21 C 1.34950 * 126.03369 * 125.00428 * 20 19 17 22 22 C 1.35320 * 107.74068 * 179.97438 * 21 20 19 23 23 C 1.39869 * 107.92393 * 359.97438 * 22 21 20 24 24 N 1.30839 * 108.20075 * 359.74515 * 23 22 21 25 25 C 1.53777 * 113.61497 * 252.49925 * 14 13 11 26 26 C 1.38737 * 119.89046 * 359.70242 * 7 6 5 27 27 C 1.38141 * 119.94063 * 0.02562 * 26 7 6 28 28 H 0.96700 * 114.00205 * 299.99223 * 1 2 3 29 29 H 1.09001 * 109.47626 * 120.00659 * 2 1 3 30 30 H 1.48494 * 110.00213 * 300.00024 * 3 2 1 31 31 H 1.48501 * 109.99913 * 61.32272 * 3 2 1 32 32 H 1.08001 * 119.97259 * 359.97438 * 5 4 2 33 33 H 1.07992 * 120.02912 * 180.24892 * 6 5 4 34 34 H 1.08995 * 109.47478 * 299.99538 * 9 8 7 35 35 H 1.08998 * 109.47227 * 59.99807 * 9 8 7 36 36 H 1.08995 * 109.47172 * 300.00237 * 10 9 8 37 37 H 1.08998 * 109.46998 * 60.00177 * 10 9 8 38 38 H 0.97005 * 119.99606 * 359.97438 * 13 11 10 39 39 H 1.09004 * 113.61814 * 203.66723 * 16 14 13 40 40 H 1.09006 * 113.61327 * 334.48878 * 16 14 13 41 41 H 1.09000 * 109.47312 * 295.00748 * 19 17 16 42 42 H 1.09003 * 109.46828 * 55.00265 * 19 17 16 43 43 H 1.07994 * 126.12801 * 359.95145 * 21 20 19 44 44 H 1.08003 * 126.03653 * 179.97438 * 22 21 20 45 45 H 1.08000 * 125.89979 * 179.97438 * 23 22 21 46 46 H 1.09000 * 113.61675 * 25.42586 * 25 14 13 47 47 H 1.09000 * 113.61747 * 156.33099 * 25 14 13 48 48 H 1.07994 * 120.02869 * 180.02562 * 26 7 6 49 49 H 1.07998 * 119.97159 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2306 5 6 2.7214 -0.0356 -2.1428 6 6 3.1878 -0.6861 -3.2687 7 6 2.8530 -2.0142 -3.4896 8 8 3.3052 -2.6545 -4.5998 9 6 4.1217 -1.8992 -5.4970 10 6 4.5323 -2.7812 -6.6779 11 6 5.3929 -1.9845 -7.6244 12 8 5.6525 -0.8256 -7.3784 13 7 5.8739 -2.5598 -8.7443 14 6 6.7108 -1.7856 -9.6641 15 1 7.2081 -0.9457 -9.1788 16 6 7.6541 -2.6514 -10.5158 17 6 6.5146 -2.7420 -11.5444 18 1 5.8381 -3.5796 -11.3741 19 6 6.9897 -2.6458 -12.9956 20 7 5.8546 -2.8610 -13.8963 21 6 5.4484 -2.0256 -14.8752 22 6 4.3719 -2.5852 -15.4746 23 6 4.1117 -3.8045 -14.8407 24 7 5.0034 -3.9736 -13.8983 25 6 6.0003 -1.4093 -10.9750 26 6 2.0554 -2.6874 -2.5756 27 6 1.5962 -2.0340 -1.4485 28 1 -0.3933 0.4416 0.7651 29 1 1.7924 -0.5139 0.8899 30 1 1.5614 2.4679 -1.2084 31 1 1.5878 2.4585 1.2243 32 1 2.9774 0.9998 -1.9730 33 1 3.8082 -0.1598 -3.9789 34 1 3.5603 -1.0397 -5.8630 35 1 5.0137 -1.5546 -4.9739 36 1 5.0938 -3.6405 -6.3116 37 1 3.6405 -3.1261 -7.2011 38 1 5.6664 -3.4868 -8.9408 39 1 8.5298 -2.1143 -10.8804 40 1 7.9050 -3.6068 -10.0549 41 1 7.4133 -1.6575 -13.1745 42 1 7.7492 -3.4055 -13.1803 43 1 5.9011 -1.0798 -15.1336 44 1 3.8125 -2.1645 -16.2971 45 1 3.3149 -4.4899 -15.0890 46 1 4.9150 -1.3625 -10.8855 47 1 6.4238 -0.5326 -11.4651 48 1 1.7938 -3.7214 -2.7452 49 1 0.9756 -2.5577 -0.7365 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_4549602.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:36:31 Heat of formation + Delta-G solvation = 32.380490 kcal Electronic energy + Delta-G solvation = -29837.682837 eV Core-core repulsion = 25541.606857 eV Total energy + Delta-G solvation = -4296.075981 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.173 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.07786 -41.49569 -41.11662 -39.66038 -39.03205 -37.38656 -35.09728 -33.76114 -33.07413 -32.03771 -31.52826 -30.97240 -28.59155 -26.76347 -26.63604 -25.67381 -24.22902 -23.45753 -22.16635 -21.98696 -21.65259 -21.52059 -20.15915 -19.55975 -18.55699 -18.30233 -17.90292 -17.51374 -17.26875 -17.00221 -16.78618 -16.46158 -16.02077 -15.83593 -15.70975 -15.54398 -15.37978 -14.80431 -14.75050 -14.57326 -14.39867 -14.26132 -14.18161 -14.00486 -13.78537 -13.69945 -13.53930 -13.46321 -12.99361 -12.82426 -12.74662 -12.46107 -12.22516 -12.01527 -11.77261 -11.72902 -11.65854 -11.57302 -11.33871 -11.11930 -10.50141 -10.32548 -10.15202 -10.05500 -9.46949 -9.22041 -4.95130 0.25642 0.29100 1.00673 1.29163 1.45275 1.56903 1.65507 1.68164 1.92631 1.95413 2.44108 2.60439 3.38783 3.39748 3.50148 3.51708 3.53437 3.75531 3.77833 3.80567 3.87199 3.89008 3.97758 4.01077 4.08813 4.21640 4.23464 4.30955 4.40013 4.40610 4.45446 4.51937 4.63174 4.64666 4.67068 4.70147 4.73736 4.75678 4.82499 4.91230 4.95322 4.96590 5.05030 5.15285 5.16402 5.17658 5.26017 5.48454 5.53650 5.69364 5.75803 6.18896 6.29287 6.39657 6.59500 6.78399 7.09230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.078 4.078 3 Si 0.755 3.245 4 C -0.125 4.125 5 C -0.082 4.082 6 C -0.209 4.209 7 C 0.122 3.878 8 O -0.321 6.321 9 C 0.073 3.927 10 C -0.133 4.133 11 C 0.523 3.477 12 O -0.580 6.580 13 N -0.702 5.702 14 C 0.113 3.887 15 H 0.092 0.908 16 C -0.119 4.119 17 C -0.115 4.115 18 H 0.088 0.912 19 C 0.135 3.865 20 N -0.373 5.373 21 C 0.051 3.949 22 C -0.295 4.295 23 C 0.028 3.972 24 N -0.334 5.334 25 C -0.144 4.144 26 C -0.158 4.158 27 C -0.060 4.060 28 H 0.395 0.605 29 H 0.098 0.902 30 H -0.304 1.304 31 H -0.283 1.283 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.129 0.871 37 H 0.121 0.879 38 H 0.416 0.584 39 H 0.119 0.881 40 H 0.087 0.913 41 H 0.125 0.875 42 H 0.092 0.908 43 H 0.203 0.797 44 H 0.158 0.842 45 H 0.195 0.805 46 H 0.048 0.952 47 H 0.104 0.896 48 H 0.144 0.856 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.159 -1.022 -1.185 5.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.186 4.186 3 Si 0.661 3.339 4 C -0.125 4.125 5 C -0.099 4.099 6 C -0.227 4.227 7 C 0.076 3.924 8 O -0.235 6.235 9 C -0.003 4.003 10 C -0.173 4.173 11 C 0.310 3.690 12 O -0.460 6.460 13 N -0.353 5.353 14 C 0.007 3.993 15 H 0.110 0.890 16 C -0.158 4.158 17 C -0.134 4.134 18 H 0.106 0.894 19 C 0.015 3.985 20 N -0.156 5.156 21 C -0.095 4.095 22 C -0.324 4.324 23 C -0.157 4.157 24 N -0.157 5.157 25 C -0.183 4.183 26 C -0.177 4.177 27 C -0.078 4.078 28 H 0.245 0.755 29 H 0.116 0.884 30 H -0.232 1.232 31 H -0.210 1.210 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.147 0.853 37 H 0.140 0.860 38 H 0.253 0.747 39 H 0.137 0.863 40 H 0.106 0.894 41 H 0.143 0.857 42 H 0.110 0.890 43 H 0.220 0.780 44 H 0.176 0.824 45 H 0.212 0.788 46 H 0.067 0.933 47 H 0.122 0.878 48 H 0.162 0.838 49 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.761 -0.635 -0.599 5.827 hybrid contribution -1.831 0.270 -0.497 1.916 sum 3.930 -0.365 -1.096 4.096 Atomic orbital electron populations 1.86544 1.18643 1.80618 1.51071 1.24887 0.83912 1.11334 0.98507 0.94257 0.90604 0.72680 0.76338 1.19428 1.00959 0.94947 0.97155 1.20948 0.96446 0.99685 0.92851 1.21390 1.06057 0.94420 1.00870 1.19173 0.94647 0.91430 0.87109 1.85956 1.65327 1.40693 1.31486 1.22451 0.94253 0.94009 0.89541 1.21438 1.01808 0.99703 0.94349 1.20613 0.79551 0.86954 0.81838 1.90732 1.60368 1.19073 1.75792 1.45589 1.51632 1.16235 1.21857 1.21863 0.92523 0.95737 0.89169 0.89003 1.23299 0.96864 1.01240 0.94382 1.22818 0.99109 0.98514 0.92947 0.89411 1.22072 0.84625 1.04686 0.87139 1.48965 1.24987 1.14563 1.27065 1.23157 0.97318 0.98082 0.90959 1.21859 1.03461 0.98794 1.08279 1.24300 0.98696 0.98426 0.94243 1.77237 1.06057 1.08448 1.23931 1.23516 1.00132 0.98086 0.96521 1.20675 1.00877 1.01673 0.94463 1.20990 0.96755 0.93782 0.96281 0.75509 0.88448 1.23167 1.20998 0.84066 0.84069 0.91951 0.91077 0.85251 0.86050 0.74726 0.86253 0.89441 0.85735 0.89000 0.77982 0.82395 0.78801 0.93283 0.87761 0.83843 0.84058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.98 12.74 -148.98 -1.90 -3.88 16 2 C -0.08 -0.08 2.81 71.24 0.20 0.12 16 3 Si 0.76 -0.07 29.78 68.60 2.04 1.98 16 4 C -0.12 -0.57 5.42 -19.85 -0.11 -0.68 16 5 C -0.08 -0.34 8.66 22.25 0.19 -0.15 16 6 C -0.21 -1.06 9.04 22.37 0.20 -0.86 16 7 C 0.12 0.75 6.69 22.51 0.15 0.90 16 8 O -0.32 -1.54 10.14 -92.47 -0.94 -2.48 16 9 C 0.07 0.14 4.03 71.98 0.29 0.43 16 10 C -0.13 0.41 6.07 29.85 0.18 0.59 16 11 C 0.52 0.70 7.83 87.66 0.69 1.38 16 12 O -0.58 -5.72 15.58 -3.02 -0.05 -5.76 16 13 N -0.70 2.34 5.26 -440.06 -2.32 0.03 16 14 C 0.11 -0.37 4.32 45.51 0.20 -0.18 16 15 H 0.09 0.03 7.46 -2.39 -0.02 0.02 16 16 C -0.12 1.01 7.39 31.12 0.23 1.24 16 17 C -0.11 0.62 3.75 -10.27 -0.04 0.58 16 18 H 0.09 -0.12 7.97 -2.39 -0.02 -0.14 16 19 C 0.13 -0.76 6.34 86.38 0.55 -0.21 16 20 N -0.37 -0.44 3.68 -348.05 -1.28 -1.72 16 21 C 0.05 -0.04 11.45 83.54 0.96 0.92 16 22 C -0.29 -0.49 10.80 21.99 0.24 -0.26 16 23 C 0.03 0.12 12.03 85.24 1.02 1.14 16 24 N -0.33 -2.21 12.28 -57.02 -0.70 -2.91 16 25 C -0.14 0.48 7.43 31.12 0.23 0.71 16 26 C -0.16 -0.79 9.99 22.37 0.22 -0.57 16 27 C -0.06 -0.27 9.60 22.25 0.21 -0.06 16 28 H 0.39 -1.84 8.74 -74.06 -0.65 -2.49 16 29 H 0.10 -0.33 7.96 -2.39 -0.02 -0.35 16 30 H -0.30 -2.40 7.11 99.48 0.71 -1.69 16 31 H -0.28 -0.97 7.11 99.48 0.71 -0.26 16 32 H 0.14 0.07 4.87 -2.91 -0.01 0.05 16 33 H 0.14 0.40 6.30 -2.91 -0.02 0.39 16 34 H 0.06 0.24 7.62 -2.39 -0.02 0.22 16 35 H 0.07 0.17 7.62 -2.39 -0.02 0.15 16 36 H 0.13 -0.92 8.14 -2.39 -0.02 -0.94 16 37 H 0.12 -0.69 8.14 -2.39 -0.02 -0.71 16 38 H 0.42 -3.33 8.70 -92.70 -0.81 -4.14 16 39 H 0.12 -1.40 8.10 -2.38 -0.02 -1.42 16 40 H 0.09 -0.80 8.14 -2.38 -0.02 -0.82 16 41 H 0.12 -1.39 7.77 -2.39 -0.02 -1.41 16 42 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 43 H 0.20 -1.67 8.06 -2.91 -0.02 -1.69 16 44 H 0.16 -0.29 8.06 -2.91 -0.02 -0.32 16 45 H 0.20 -0.14 8.06 -2.91 -0.02 -0.16 16 46 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 47 H 0.10 -0.60 7.90 -2.39 -0.02 -0.62 16 48 H 0.14 0.29 8.06 -2.91 -0.02 0.26 16 49 H 0.14 0.26 8.06 -2.91 -0.02 0.23 16 Total: 0.00 -26.11 409.35 0.05 -26.07 By element: Atomic # 1 Polarization: -15.95 SS G_CDS: -0.44 Total: -16.39 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 5.62 Total: 5.07 kcal Atomic # 7 Polarization: -0.31 SS G_CDS: -4.30 Total: -4.61 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -2.88 Total: -12.12 kcal Atomic # 14 Polarization: -0.07 SS G_CDS: 2.04 Total: 1.98 kcal Total: -26.11 0.05 -26.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_4549602.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.447 kcal (2) G-P(sol) polarization free energy of solvation -26.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds