Wall clock time and date at job start Sun Mar 7 2021 04:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86300 * 109.47079 * 2 1 4 4 C 1.50696 * 109.46833 * 120.00142 * 2 1 3 5 5 C 1.38247 * 119.96984 * 245.02132 * 4 2 1 6 6 C 1.38292 * 120.11271 * 180.02562 * 5 4 2 7 7 C 1.38121 * 120.05156 * 359.67474 * 6 5 4 8 8 C 1.38756 * 119.94383 * 0.59933 * 7 6 5 9 9 O 1.35910 * 120.05354 * 179.70061 * 8 7 6 10 10 C 1.42895 * 116.99913 * 359.72563 * 9 8 7 11 11 C 1.53000 * 109.46880 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.47332 * 180.02562 * 11 10 9 13 13 O 1.21286 * 119.99513 * 0.02562 * 12 11 10 14 14 N 1.34769 * 120.00205 * 179.97438 * 12 11 10 15 15 C 1.46501 * 120.00014 * 179.97438 * 14 12 11 16 16 H 1.09004 * 112.85074 * 336.20143 * 15 14 12 17 17 C 1.53782 * 113.61142 * 107.50467 * 15 14 12 18 18 C 1.53962 * 87.11063 * 89.18830 * 17 15 14 19 19 H 1.08993 * 113.61598 * 270.84305 * 18 17 15 20 20 C 1.52999 * 113.66529 * 139.88900 * 18 17 15 21 21 N 1.46494 * 109.47391 * 87.55384 * 20 18 17 22 22 C 1.34948 * 126.04143 * 124.99918 * 21 20 18 23 23 C 1.35319 * 107.74754 * 179.97438 * 22 21 20 24 24 C 1.39867 * 107.91928 * 359.97438 * 23 22 21 25 25 N 1.30835 * 108.20571 * 359.73998 * 24 23 22 26 26 C 1.53781 * 113.61619 * 205.00312 * 15 14 12 27 27 C 1.38164 * 119.97350 * 65.00173 * 4 2 1 28 28 H 0.96702 * 114.00115 * 300.00283 * 1 2 3 29 29 H 1.08996 * 109.46916 * 239.99946 * 2 1 3 30 30 H 1.48507 * 109.99928 * 178.68021 * 3 2 1 31 31 H 1.48500 * 110.00132 * 300.00058 * 3 2 1 32 32 H 1.07998 * 119.94682 * 359.97438 * 5 4 2 33 33 H 1.07993 * 119.97543 * 179.97438 * 6 5 4 34 34 H 1.07996 * 120.03109 * 180.32684 * 7 6 5 35 35 H 1.08999 * 109.47305 * 60.00000 * 10 9 8 36 36 H 1.08996 * 109.47434 * 299.99695 * 10 9 8 37 37 H 1.08999 * 109.47114 * 59.99928 * 11 10 9 38 38 H 1.09003 * 109.47265 * 299.99994 * 11 10 9 39 39 H 0.97001 * 120.00013 * 0.02562 * 14 12 11 40 40 H 1.08997 * 113.61668 * 203.66381 * 17 15 14 41 41 H 1.08998 * 113.61674 * 334.48890 * 17 15 14 42 42 H 1.09002 * 109.47053 * 207.55709 * 20 18 17 43 43 H 1.09004 * 109.47121 * 327.55345 * 20 18 17 44 44 H 1.07995 * 126.12303 * 359.94867 * 22 21 20 45 45 H 1.07993 * 126.03946 * 179.97438 * 23 22 21 46 46 H 1.08001 * 125.89818 * 180.02562 * 24 23 22 47 47 H 1.09002 * 113.61445 * 25.43587 * 26 15 14 48 48 H 1.09002 * 113.61408 * 156.25317 * 26 15 14 49 49 H 1.07993 * 120.03206 * 0.03990 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.6382 -0.0116 2.1912 6 6 3.1010 -0.6607 3.3212 7 6 2.8519 -2.0080 3.4958 8 6 2.1474 -2.7129 2.5302 9 8 1.9063 -4.0400 2.6968 10 6 2.4125 -4.6469 3.8874 11 6 2.0450 -6.1320 3.8987 12 6 2.5783 -6.7720 5.1545 13 8 3.1915 -6.1056 5.9614 14 7 2.3730 -8.0844 5.3816 15 6 2.8919 -8.7067 6.6022 16 1 3.7378 -8.1656 7.0264 17 6 1.8008 -9.0513 7.6296 18 6 1.6779 -10.4150 6.9255 19 1 0.9594 -10.4200 6.1059 20 6 1.4908 -11.5889 7.8887 21 7 0.0643 -11.7664 8.1710 22 6 -0.6423 -12.9041 8.0050 23 6 -1.9191 -12.6546 8.3772 24 6 -1.9953 -11.3189 8.7852 25 7 -0.8057 -10.7871 8.6677 26 6 3.1331 -10.2195 6.4679 27 6 1.6844 -2.0595 1.3976 28 1 -0.3933 0.4417 0.7650 29 1 1.7923 -0.5138 -0.8900 30 1 3.5346 1.7703 0.0321 31 1 1.5615 2.4679 -1.2085 32 1 2.8302 1.0429 2.0586 33 1 3.6534 -0.1127 4.0701 34 1 3.2088 -2.5134 4.3809 35 1 1.9757 -4.1582 4.7583 36 1 3.4969 -4.5403 3.9168 37 1 2.4815 -6.6209 3.0278 38 1 0.9606 -6.2383 3.8695 39 1 1.8822 -8.6173 4.7365 40 1 2.1707 -9.1214 8.6525 41 1 0.9086 -8.4312 7.5438 42 1 1.8874 -12.4975 7.4356 43 1 2.0224 -11.3845 8.8181 44 1 -0.2577 -13.8449 7.6400 45 1 -2.7351 -13.3618 8.3620 46 1 -2.8819 -10.8149 9.1407 47 1 3.3158 -10.5433 5.4432 48 1 3.8683 -10.6086 7.1722 49 1 1.1324 -2.6051 0.6467 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_4549614.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:36:35 Heat of formation + Delta-G solvation = 30.779319 kcal Electronic energy + Delta-G solvation = -29911.742866 eV Core-core repulsion = 25615.597453 eV Total energy + Delta-G solvation = -4296.145413 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.173 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.06494 -41.51575 -41.13943 -39.67089 -39.05073 -37.27698 -35.11024 -33.76104 -32.98596 -32.48593 -30.98719 -30.80708 -28.58662 -27.05946 -26.71755 -25.66786 -24.02820 -23.70040 -22.25976 -21.90765 -21.66185 -21.47899 -20.32947 -19.40823 -18.35093 -18.04133 -17.73771 -17.54682 -17.13971 -17.07466 -16.84745 -16.38173 -16.26071 -16.02841 -15.76963 -15.40020 -15.16236 -14.94189 -14.87634 -14.67994 -14.51483 -14.30184 -14.22159 -14.09123 -13.67648 -13.54945 -13.40570 -13.25544 -12.97827 -12.86253 -12.79352 -12.40735 -12.20742 -12.05660 -11.85466 -11.68129 -11.65388 -11.58405 -11.24153 -11.14016 -10.49584 -10.33256 -10.15575 -9.97156 -9.47744 -9.30349 -4.98624 0.17065 0.36245 1.02136 1.29066 1.43224 1.63487 1.66342 1.68977 1.96459 1.96617 2.42737 2.63840 3.33340 3.46114 3.48030 3.51750 3.65331 3.67224 3.74695 3.81324 3.84827 3.92353 4.01961 4.06717 4.09582 4.20995 4.22507 4.23991 4.34306 4.35953 4.46533 4.47650 4.58385 4.61405 4.67094 4.71610 4.73239 4.78776 4.83225 4.92663 4.94971 5.00989 5.03812 5.13620 5.17097 5.23077 5.35315 5.41180 5.52622 5.67755 5.76503 6.20450 6.28769 6.38452 6.74777 6.80447 7.08104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.079 4.079 3 Si 0.785 3.215 4 C -0.085 4.085 5 C -0.155 4.155 6 C -0.075 4.075 7 C -0.211 4.211 8 C 0.115 3.885 9 O -0.325 6.325 10 C 0.075 3.925 11 C -0.133 4.133 12 C 0.522 3.478 13 O -0.582 6.582 14 N -0.699 5.699 15 C 0.110 3.890 16 H 0.087 0.913 17 C -0.137 4.137 18 C -0.110 4.110 19 H 0.090 0.910 20 C 0.134 3.866 21 N -0.375 5.375 22 C 0.052 3.948 23 C -0.293 4.293 24 C 0.025 3.975 25 N -0.331 5.331 26 C -0.116 4.116 27 C -0.142 4.142 28 H 0.396 0.604 29 H 0.106 0.894 30 H -0.285 1.285 31 H -0.298 1.298 32 H 0.151 0.849 33 H 0.154 0.846 34 H 0.136 0.864 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.417 0.583 40 H 0.088 0.912 41 H 0.049 0.951 42 H 0.130 0.870 43 H 0.087 0.913 44 H 0.206 0.794 45 H 0.159 0.841 46 H 0.192 0.808 47 H 0.094 0.906 48 H 0.116 0.884 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.790 -5.003 0.502 5.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.188 4.188 3 Si 0.691 3.309 4 C -0.085 4.085 5 C -0.172 4.172 6 C -0.093 4.093 7 C -0.230 4.230 8 C 0.070 3.930 9 O -0.239 6.239 10 C 0.000 4.000 11 C -0.172 4.172 12 C 0.310 3.690 13 O -0.461 6.461 14 N -0.351 5.351 15 C 0.004 3.996 16 H 0.105 0.895 17 C -0.175 4.175 18 C -0.129 4.129 19 H 0.108 0.892 20 C 0.014 3.986 21 N -0.158 5.158 22 C -0.094 4.094 23 C -0.322 4.322 24 C -0.160 4.160 25 N -0.153 5.153 26 C -0.155 4.155 27 C -0.161 4.161 28 H 0.246 0.754 29 H 0.124 0.876 30 H -0.212 1.212 31 H -0.226 1.226 32 H 0.168 0.832 33 H 0.172 0.828 34 H 0.154 0.846 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.146 0.854 38 H 0.141 0.859 39 H 0.254 0.746 40 H 0.106 0.894 41 H 0.067 0.933 42 H 0.148 0.852 43 H 0.105 0.895 44 H 0.223 0.777 45 H 0.177 0.823 46 H 0.209 0.791 47 H 0.113 0.887 48 H 0.134 0.866 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.544 -3.350 0.113 4.208 hybrid contribution -0.794 -1.588 -0.204 1.787 sum 1.750 -4.938 -0.091 5.240 Atomic orbital electron populations 1.86473 1.17152 1.82255 1.50449 1.25314 0.85367 1.11341 0.96753 0.93562 0.77827 0.74803 0.84743 1.20254 0.98005 0.93351 0.96936 1.21179 1.00808 1.00530 0.94679 1.21266 0.97113 0.93376 0.97507 1.21556 1.04290 0.96679 1.00485 1.19160 0.95875 0.82917 0.95022 1.85952 1.74728 1.20392 1.42839 1.22419 0.99212 0.92909 0.85494 1.21434 1.05232 0.93684 0.96892 1.20620 0.78604 0.82361 0.87429 1.90735 1.42952 1.63326 1.49131 1.45538 1.57162 1.09138 1.23215 1.21905 0.96996 0.95017 0.85663 0.89481 1.23397 0.98485 0.96836 0.98820 1.22800 0.98318 0.93734 0.98048 0.89206 1.22063 0.75011 1.01356 1.00170 1.48991 1.09596 1.07695 1.49513 1.23192 0.92632 0.92969 1.00622 1.21852 0.98471 0.97706 1.14208 1.24306 0.96411 0.95254 1.00044 1.77334 1.01541 1.15352 1.21095 1.23278 0.95499 0.92508 1.04184 1.20327 1.03958 0.94446 0.97353 0.75434 0.87648 1.21159 1.22595 0.83159 0.82798 0.84626 0.91739 0.91544 0.85395 0.85912 0.74624 0.89374 0.93256 0.85189 0.89451 0.77695 0.82343 0.79090 0.88719 0.86595 0.85587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.14 12.83 -148.98 -1.91 -3.05 16 2 C -0.08 -0.10 2.80 71.23 0.20 0.10 16 3 Si 0.79 -1.22 29.80 68.60 2.04 0.83 16 4 C -0.08 -0.23 5.35 -19.88 -0.11 -0.34 16 5 C -0.15 -0.01 8.67 22.28 0.19 0.18 16 6 C -0.07 -0.05 10.04 22.25 0.22 0.17 16 7 C -0.21 -0.82 9.04 22.37 0.20 -0.62 16 8 C 0.12 0.73 6.69 22.51 0.15 0.88 16 9 O -0.32 -1.87 10.14 -92.54 -0.94 -2.81 16 10 C 0.08 0.20 4.03 71.98 0.29 0.49 16 11 C -0.13 0.33 6.07 29.85 0.18 0.51 16 12 C 0.52 1.08 7.83 87.66 0.69 1.76 16 13 O -0.58 -6.41 15.58 -3.05 -0.05 -6.45 16 14 N -0.70 2.10 5.26 -440.03 -2.32 -0.22 16 15 C 0.11 -0.23 4.32 45.52 0.20 -0.03 16 16 H 0.09 0.20 7.47 -2.38 -0.02 0.18 16 17 C -0.14 0.05 7.44 31.18 0.23 0.28 16 18 C -0.11 0.62 3.72 -10.20 -0.04 0.58 16 19 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 20 C 0.13 -0.79 6.35 86.38 0.55 -0.24 16 21 N -0.38 -0.33 3.68 -348.07 -1.28 -1.61 16 22 C 0.05 -0.08 11.45 83.54 0.96 0.87 16 23 C -0.29 -0.33 10.80 21.99 0.24 -0.09 16 24 C 0.03 0.11 12.02 85.24 1.02 1.13 16 25 N -0.33 -2.31 12.42 -57.03 -0.71 -3.02 16 26 C -0.12 1.02 7.38 31.12 0.23 1.25 16 27 C -0.14 -0.85 9.62 22.36 0.22 -0.63 16 28 H 0.40 -2.43 8.70 -74.06 -0.64 -3.08 16 29 H 0.11 0.27 7.96 -2.39 -0.02 0.25 16 30 H -0.28 -0.87 7.11 99.48 0.71 -0.16 16 31 H -0.30 -1.70 7.11 99.48 0.71 -0.99 16 32 H 0.15 -0.77 4.90 -2.91 -0.01 -0.78 16 33 H 0.15 -0.69 8.06 -2.91 -0.02 -0.71 16 34 H 0.14 0.34 6.30 -2.91 -0.02 0.32 16 35 H 0.06 0.26 7.61 -2.39 -0.02 0.24 16 36 H 0.07 0.24 7.63 -2.39 -0.02 0.22 16 37 H 0.13 -0.83 8.14 -2.39 -0.02 -0.85 16 38 H 0.12 -0.66 8.14 -2.39 -0.02 -0.68 16 39 H 0.42 -3.59 8.70 -92.71 -0.81 -4.40 16 40 H 0.09 0.03 7.90 -2.39 -0.02 0.01 16 41 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 42 H 0.13 -1.60 8.07 -2.39 -0.02 -1.62 16 43 H 0.09 -0.49 7.85 -2.38 -0.02 -0.51 16 44 H 0.21 -1.98 8.06 -2.91 -0.02 -2.00 16 45 H 0.16 -0.40 8.06 -2.91 -0.02 -0.42 16 46 H 0.19 -0.02 8.06 -2.91 -0.02 -0.04 16 47 H 0.09 -1.05 8.14 -2.39 -0.02 -1.07 16 48 H 0.12 -1.30 8.10 -2.39 -0.02 -1.32 16 49 H 0.13 0.81 8.06 -2.91 -0.02 0.79 16 Total: 0.00 -26.86 409.74 0.03 -26.83 By element: Atomic # 1 Polarization: -16.34 SS G_CDS: -0.43 Total: -16.77 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 5.62 Total: 6.27 kcal Atomic # 7 Polarization: -0.54 SS G_CDS: -4.30 Total: -4.84 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: -2.90 Total: -12.31 kcal Atomic # 14 Polarization: -1.22 SS G_CDS: 2.04 Total: 0.83 kcal Total: -26.86 0.03 -26.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_4549614.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.604 kcal (2) G-P(sol) polarization free energy of solvation -26.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds