Wall clock time and date at job start Sun Mar 7 2021 04:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86303 * 109.47425 * 2 1 4 4 C 1.50698 * 109.47265 * 239.99338 * 2 1 3 5 5 C 1.38254 * 119.96888 * 120.02660 * 4 2 1 6 6 C 1.38289 * 120.11075 * 180.02562 * 5 4 2 7 7 C 1.38123 * 120.05303 * 359.67127 * 6 5 4 8 8 C 1.38757 * 119.94487 * 0.60317 * 7 6 5 9 9 O 1.35901 * 120.05248 * 179.69695 * 8 7 6 10 10 C 1.42895 * 117.00475 * 359.72479 * 9 8 7 11 11 C 1.52997 * 109.47269 * 179.97438 * 10 9 8 12 12 C 1.53006 * 109.47127 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47184 * 179.97438 * 12 11 10 14 14 O 1.21282 * 120.00025 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00035 * 179.97438 * 13 12 11 16 16 C 1.46496 * 119.99846 * 180.02562 * 15 13 12 17 17 H 1.09003 * 112.85161 * 336.19827 * 16 15 13 18 18 C 1.53781 * 113.61447 * 107.50861 * 16 15 13 19 19 C 1.53778 * 87.08406 * 89.11249 * 18 16 15 20 20 H 1.08998 * 113.68930 * 270.87210 * 19 18 16 21 21 C 1.53000 * 113.61134 * 139.98026 * 19 18 16 22 22 N 1.46505 * 109.47051 * 87.50695 * 21 19 18 23 23 C 1.34944 * 126.03598 * 124.99816 * 22 21 19 24 24 C 1.35321 * 107.74323 * 179.97438 * 23 22 21 25 25 C 1.39861 * 107.91862 * 359.97438 * 24 23 22 26 26 N 1.30832 * 108.20670 * 359.74110 * 25 24 23 27 27 C 1.53783 * 87.08162 * 25.43571 * 19 18 16 28 28 C 1.38165 * 119.97618 * 300.00446 * 4 2 1 29 29 H 0.96701 * 113.99529 * 60.00228 * 1 2 3 30 30 H 1.09005 * 109.47071 * 119.99373 * 2 1 3 31 31 H 1.48502 * 109.99634 * 298.67904 * 3 2 1 32 32 H 1.48499 * 110.00061 * 59.99468 * 3 2 1 33 33 H 1.08002 * 119.94125 * 359.97438 * 5 4 2 34 34 H 1.07996 * 119.97246 * 179.97438 * 6 5 4 35 35 H 1.08001 * 120.02720 * 180.32398 * 7 6 5 36 36 H 1.09001 * 109.47098 * 59.99597 * 10 9 8 37 37 H 1.09004 * 109.47055 * 300.00096 * 10 9 8 38 38 H 1.09001 * 109.46832 * 60.00112 * 11 10 9 39 39 H 1.08993 * 109.47194 * 299.99633 * 11 10 9 40 40 H 1.09001 * 109.46801 * 300.00272 * 12 11 10 41 41 H 1.09001 * 109.46998 * 59.99868 * 12 11 10 42 42 H 0.96998 * 119.99962 * 0.02562 * 15 13 12 43 43 H 1.09004 * 113.61691 * 203.66576 * 18 16 15 44 44 H 1.09002 * 113.61125 * 334.55994 * 18 16 15 45 45 H 1.09009 * 109.46987 * 207.50189 * 21 19 18 46 46 H 1.08999 * 109.47602 * 327.50438 * 21 19 18 47 47 H 1.07996 * 126.13163 * 359.95388 * 23 22 21 48 48 H 1.07999 * 126.03891 * 179.97438 * 24 23 22 49 49 H 1.08010 * 125.89567 * 179.97438 * 25 24 23 50 50 H 1.08998 * 113.61216 * 220.02209 * 27 19 18 51 51 H 1.08996 * 113.61555 * 89.11197 * 27 19 18 52 52 H 1.07997 * 120.02824 * 0.04226 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7266 -0.0383 -2.1398 6 6 3.1888 -0.6873 -3.2701 7 6 2.8623 -2.0113 -3.4896 8 6 2.0596 -2.6866 -2.5813 9 8 1.7320 -3.9875 -2.7983 10 6 2.2439 -4.5962 -3.9855 11 6 1.7735 -6.0503 -4.0566 12 6 2.3211 -6.7019 -5.3281 13 6 1.8583 -8.1343 -5.3979 14 8 1.1588 -8.5892 -4.5177 15 7 2.2207 -8.9096 -6.4391 16 6 1.7703 -10.3020 -6.5072 17 1 1.5228 -10.7151 -5.5293 18 6 0.6901 -10.5485 -7.5736 19 6 1.8378 -10.8155 -8.5616 20 1 2.1921 -9.9208 -9.0734 21 6 1.5651 -11.9784 -9.5179 22 7 0.8525 -11.4831 -10.6982 23 6 1.2365 -11.6420 -11.9821 24 6 0.3115 -11.0419 -12.7665 25 6 -0.6717 -10.4983 -11.9335 26 7 -0.3516 -10.7672 -10.6938 27 6 2.6906 -11.2070 -7.3433 28 6 1.5972 -2.0333 -1.4484 29 1 -0.3932 0.4417 -0.7651 30 1 1.7923 -0.5138 0.8901 31 1 1.5880 2.4585 -1.2243 32 1 1.5615 2.4679 1.2084 33 1 2.9867 0.9957 -1.9675 34 1 3.8095 -0.1599 -3.9792 35 1 3.2278 -2.5193 -4.3698 36 1 3.3334 -4.5676 -3.9677 37 1 1.8804 -4.0532 -4.8579 38 1 0.6840 -6.0792 -4.0743 39 1 2.1373 -6.5930 -3.1843 40 1 1.9569 -6.1590 -6.2003 41 1 3.4106 -6.6728 -5.3110 42 1 2.7798 -8.5457 -7.1433 43 1 0.0722 -11.4242 -7.3750 44 1 0.1039 -9.6616 -7.8145 45 1 2.5106 -12.4253 -9.8253 46 1 0.9557 -12.7283 -9.0136 47 1 2.1234 -12.1557 -12.3225 48 1 0.3293 -10.9917 -13.8452 49 1 -1.5464 -9.9539 -12.2579 50 1 3.7196 -10.8516 -7.3983 51 1 2.6197 -12.2627 -7.0817 52 1 0.9757 -2.5579 -0.7379 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_4549616.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:36:40 Heat of formation + Delta-G solvation = 24.353787 kcal Electronic energy + Delta-G solvation = -31481.014138 eV Core-core repulsion = 27029.052474 eV Total energy + Delta-G solvation = -4451.961664 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.188 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.06350 -41.37983 -41.18717 -39.63102 -39.17724 -37.43139 -35.06935 -34.92125 -33.40603 -32.47600 -31.25547 -30.94183 -28.98341 -27.96617 -26.83656 -26.71279 -24.47733 -23.71191 -23.39271 -21.94281 -21.89880 -21.64747 -21.45181 -20.30812 -19.25260 -18.40401 -18.00955 -17.92487 -17.49821 -17.20770 -17.00735 -16.84735 -16.48143 -16.32971 -16.17888 -15.77562 -15.53855 -15.27434 -15.02138 -14.85430 -14.71061 -14.60667 -14.45949 -14.20995 -14.11492 -13.72475 -13.58664 -13.41539 -13.29960 -13.26533 -13.09856 -12.81156 -12.74921 -12.35428 -12.30572 -12.19444 -11.95663 -11.67437 -11.62797 -11.57961 -11.56688 -11.24093 -11.02296 -10.69193 -10.33302 -10.10723 -9.92789 -9.47736 -9.25276 -4.91651 0.20962 0.40538 1.02339 1.28784 1.54440 1.61548 1.68591 1.87719 1.96559 1.97477 2.34884 2.67294 3.33770 3.38480 3.46813 3.57652 3.65035 3.67652 3.77393 3.83806 3.85978 3.95384 4.02148 4.09831 4.10144 4.17589 4.22863 4.24835 4.32747 4.35689 4.38233 4.43664 4.47162 4.54527 4.58521 4.66725 4.69997 4.73220 4.78965 4.85074 4.92829 4.97386 4.98665 5.00936 5.04200 5.12312 5.17072 5.17434 5.28410 5.38349 5.44807 5.56676 5.74313 5.76495 6.20596 6.41994 6.44807 6.47651 6.80658 7.19991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.093 4.093 3 Si 0.784 3.216 4 C -0.082 4.082 5 C -0.159 4.159 6 C -0.072 4.072 7 C -0.206 4.206 8 C 0.115 3.885 9 O -0.339 6.339 10 C 0.059 3.941 11 C -0.102 4.102 12 C -0.126 4.126 13 C 0.510 3.490 14 O -0.589 6.589 15 N -0.701 5.701 16 C 0.108 3.892 17 H 0.081 0.919 18 C -0.138 4.138 19 C -0.107 4.107 20 H 0.092 0.908 21 C 0.134 3.866 22 N -0.375 5.375 23 C 0.053 3.947 24 C -0.293 4.293 25 C 0.025 3.975 26 N -0.332 5.332 27 C -0.115 4.115 28 C -0.152 4.152 29 H 0.386 0.614 30 H 0.121 0.879 31 H -0.278 1.278 32 H -0.304 1.304 33 H 0.149 0.851 34 H 0.160 0.840 35 H 0.153 0.847 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.124 0.876 41 H 0.132 0.868 42 H 0.417 0.583 43 H 0.085 0.915 44 H 0.048 0.952 45 H 0.131 0.869 46 H 0.085 0.915 47 H 0.207 0.793 48 H 0.159 0.841 49 H 0.192 0.808 50 H 0.096 0.904 51 H 0.113 0.887 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.806 -0.204 -8.208 13.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.201 4.201 3 Si 0.688 3.312 4 C -0.083 4.083 5 C -0.177 4.177 6 C -0.090 4.090 7 C -0.224 4.224 8 C 0.070 3.930 9 O -0.254 6.254 10 C -0.016 4.016 11 C -0.140 4.140 12 C -0.166 4.166 13 C 0.298 3.702 14 O -0.469 6.469 15 N -0.353 5.353 16 C 0.002 3.998 17 H 0.099 0.901 18 C -0.177 4.177 19 C -0.127 4.127 20 H 0.110 0.890 21 C 0.014 3.986 22 N -0.158 5.158 23 C -0.093 4.093 24 C -0.322 4.322 25 C -0.160 4.160 26 N -0.154 5.154 27 C -0.154 4.154 28 C -0.171 4.171 29 H 0.235 0.765 30 H 0.138 0.862 31 H -0.205 1.205 32 H -0.232 1.232 33 H 0.166 0.834 34 H 0.177 0.823 35 H 0.171 0.829 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.142 0.858 41 H 0.150 0.850 42 H 0.254 0.746 43 H 0.103 0.897 44 H 0.067 0.933 45 H 0.149 0.851 46 H 0.104 0.896 47 H 0.224 0.776 48 H 0.177 0.823 49 H 0.209 0.791 50 H 0.115 0.885 51 H 0.132 0.868 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 9.826 -0.109 -5.583 11.302 hybrid contribution -1.391 -0.342 -1.571 2.126 sum 8.435 -0.451 -7.154 11.070 Atomic orbital electron populations 1.86575 1.18677 1.80544 1.50102 1.25451 0.83439 1.12761 0.98440 0.93894 0.90066 0.70825 0.76433 1.20147 0.97839 0.93313 0.96986 1.21192 1.00282 1.00920 0.95290 1.21311 0.97437 0.93454 0.96803 1.21608 1.02616 0.96885 1.01296 1.19212 0.95265 0.83564 0.94970 1.86052 1.71699 1.22952 1.44690 1.22979 0.99803 0.92990 0.85796 1.21149 1.01415 0.93136 0.98301 1.21532 1.04837 0.90374 0.99849 1.21226 0.78963 0.89286 0.80733 1.90736 1.39667 1.76018 1.40483 1.45588 1.53268 1.11500 1.24966 1.21876 0.96587 0.82366 0.98957 0.90103 1.23364 0.96631 1.01713 0.95958 1.22757 0.97204 0.98369 0.94322 0.88969 1.22069 0.97175 0.96034 0.83358 1.48989 1.17631 1.42676 1.06495 1.23200 1.01515 1.00736 0.83898 1.21850 0.98324 1.10334 1.01689 1.24303 1.00987 1.00319 0.90412 1.77339 0.99777 1.15988 1.22345 1.23270 0.98827 1.00984 0.92306 1.20318 1.04188 0.94942 0.97657 0.76487 0.86151 1.20467 1.23232 0.83415 0.82263 0.82918 0.89522 0.90060 0.92527 0.91952 0.85791 0.85030 0.74600 0.89695 0.93347 0.85077 0.89649 0.77626 0.82303 0.79129 0.88509 0.86837 0.86713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -3.18 12.77 -148.98 -1.90 -5.08 16 2 C -0.09 -0.18 2.82 71.24 0.20 0.02 16 3 Si 0.78 -1.11 29.79 68.60 2.04 0.94 16 4 C -0.08 -0.23 5.39 -19.88 -0.11 -0.34 16 5 C -0.16 0.16 8.67 22.29 0.19 0.35 16 6 C -0.07 0.18 10.04 22.25 0.22 0.40 16 7 C -0.21 0.07 9.04 22.37 0.20 0.28 16 8 C 0.12 0.62 6.69 22.51 0.15 0.77 16 9 O -0.34 -2.31 10.14 -92.44 -0.94 -3.25 16 10 C 0.06 -0.10 4.74 71.98 0.34 0.25 16 11 C -0.10 -0.11 4.87 30.60 0.15 0.04 16 12 C -0.13 0.70 5.70 29.85 0.17 0.87 16 13 C 0.51 1.29 7.83 87.66 0.69 1.98 16 14 O -0.59 -8.11 15.58 -3.04 -0.05 -8.15 16 15 N -0.70 2.06 5.26 -440.03 -2.32 -0.26 16 16 C 0.11 -0.12 4.32 45.52 0.20 0.08 16 17 H 0.08 0.34 7.46 -2.39 -0.02 0.33 16 18 C -0.14 -0.08 7.43 31.12 0.23 0.16 16 19 C -0.11 0.59 3.71 -10.27 -0.04 0.55 16 20 H 0.09 -0.42 8.14 -2.39 -0.02 -0.44 16 21 C 0.13 -0.77 6.34 86.38 0.55 -0.22 16 22 N -0.38 -0.32 3.68 -348.04 -1.28 -1.60 16 23 C 0.05 -0.10 11.45 83.54 0.96 0.86 16 24 C -0.29 -0.25 10.80 21.99 0.24 -0.01 16 25 C 0.03 0.11 12.02 85.23 1.02 1.13 16 26 N -0.33 -2.35 12.42 -57.03 -0.71 -3.06 16 27 C -0.12 0.97 7.39 31.12 0.23 1.20 16 28 C -0.15 -1.05 9.55 22.36 0.21 -0.84 16 29 H 0.39 -0.06 8.70 -74.06 -0.64 -0.70 16 30 H 0.12 0.14 7.96 -2.38 -0.02 0.12 16 31 H -0.28 -0.45 7.11 99.48 0.71 0.26 16 32 H -0.30 -1.94 7.11 99.48 0.71 -1.24 16 33 H 0.15 -0.82 4.87 -2.91 -0.01 -0.84 16 34 H 0.16 -1.36 8.06 -2.91 -0.02 -1.39 16 35 H 0.15 -0.90 6.30 -2.91 -0.02 -0.92 16 36 H 0.09 -0.53 7.65 -2.39 -0.02 -0.55 16 37 H 0.08 -0.43 7.67 -2.38 -0.02 -0.44 16 38 H 0.06 0.36 8.10 -2.39 -0.02 0.34 16 39 H 0.06 0.33 8.10 -2.39 -0.02 0.31 16 40 H 0.12 -1.27 8.14 -2.39 -0.02 -1.29 16 41 H 0.13 -1.55 8.14 -2.39 -0.02 -1.57 16 42 H 0.42 -3.97 8.70 -92.71 -0.81 -4.77 16 43 H 0.08 0.14 7.90 -2.38 -0.02 0.12 16 44 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 45 H 0.13 -1.62 8.07 -2.38 -0.02 -1.64 16 46 H 0.09 -0.44 7.84 -2.39 -0.02 -0.46 16 47 H 0.21 -2.06 8.06 -2.91 -0.02 -2.08 16 48 H 0.16 -0.45 8.06 -2.91 -0.02 -0.48 16 49 H 0.19 -0.03 8.06 -2.91 -0.02 -0.05 16 50 H 0.10 -1.08 8.14 -2.39 -0.02 -1.10 16 51 H 0.11 -1.19 8.10 -2.39 -0.02 -1.21 16 52 H 0.11 1.09 8.06 -2.91 -0.02 1.06 16 Total: 0.00 -31.50 431.09 0.19 -31.31 By element: Atomic # 1 Polarization: -17.89 SS G_CDS: -0.47 Total: -18.37 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: 5.81 Total: 7.52 kcal Atomic # 7 Polarization: -0.61 SS G_CDS: -4.30 Total: -4.92 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -2.89 Total: -16.48 kcal Atomic # 14 Polarization: -1.11 SS G_CDS: 2.04 Total: 0.94 kcal Total: -31.50 0.19 -31.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_4549616.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.665 kcal (2) G-P(sol) polarization free energy of solvation -31.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds