Wall clock time and date at job start Sun Mar 7 2021 04:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86300 * 109.47030 * 2 1 4 4 C 1.50696 * 109.47278 * 239.99675 * 2 1 3 5 5 C 1.38268 * 119.94238 * 119.72540 * 4 2 1 6 6 C 1.38148 * 120.05255 * 179.72402 * 5 4 2 7 7 C 1.38731 * 119.94303 * 0.55323 * 6 5 4 8 8 O 1.35900 * 120.05280 * 179.74897 * 7 6 5 9 9 C 1.42897 * 117.00207 * 359.97334 * 8 7 6 10 10 C 1.50703 * 109.47158 * 180.02562 * 9 8 7 11 11 C 1.36408 * 125.80427 * 90.00068 * 10 9 8 12 12 C 1.47378 * 127.19359 * 359.97438 * 11 10 9 13 13 O 1.21617 * 119.99920 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00340 * 180.02562 * 12 11 10 15 15 C 1.46501 * 120.00376 * 180.02562 * 14 12 11 16 16 H 1.08999 * 112.84482 * 334.66451 * 15 14 12 17 17 C 1.53773 * 113.61882 * 105.85904 * 15 14 12 18 18 C 1.54052 * 86.98530 * 89.16388 * 17 15 14 19 19 H 1.09000 * 113.61293 * 270.88592 * 18 17 15 20 20 C 1.53002 * 113.61990 * 139.97884 * 18 17 15 21 21 N 1.46505 * 109.46715 * 87.50651 * 20 18 17 22 22 C 1.34948 * 126.03342 * 125.00174 * 21 20 18 23 23 C 1.35317 * 107.74204 * 179.97438 * 22 21 20 24 24 C 1.39865 * 107.92215 * 0.02562 * 23 22 21 25 25 N 1.30834 * 108.20391 * 359.73838 * 24 23 22 26 26 C 1.53777 * 87.07820 * 25.43072 * 18 17 15 27 27 C 1.47024 * 105.61796 * 179.97438 * 11 10 9 28 28 C 1.34183 * 105.95179 * 0.02562 * 27 11 10 29 29 O 1.33656 * 125.79606 * 269.69382 * 10 9 8 30 30 C 1.38728 * 119.89302 * 359.72113 * 7 6 5 31 31 C 1.38154 * 119.93919 * 0.02562 * 30 7 6 32 32 H 0.96700 * 114.00022 * 300.00827 * 1 2 3 33 33 H 1.08997 * 109.46978 * 119.99554 * 2 1 3 34 34 H 1.48506 * 110.00048 * 178.68200 * 3 2 1 35 35 H 1.48502 * 109.99996 * 299.99525 * 3 2 1 36 36 H 1.07998 * 119.97204 * 359.97438 * 5 4 2 37 37 H 1.08003 * 120.02568 * 180.27470 * 6 5 4 38 38 H 1.08998 * 109.47221 * 300.00355 * 9 8 7 39 39 H 1.09003 * 109.47106 * 60.00320 * 9 8 7 40 40 H 0.96999 * 119.99613 * 359.97438 * 14 12 11 41 41 H 1.08998 * 113.61592 * 203.66818 * 17 15 14 42 42 H 1.09005 * 113.61539 * 334.57263 * 17 15 14 43 43 H 1.09000 * 109.46916 * 207.50295 * 20 18 17 44 44 H 1.08992 * 109.47023 * 327.50743 * 20 18 17 45 45 H 1.08000 * 126.13258 * 359.95429 * 22 21 20 46 46 H 1.08001 * 126.03866 * 179.97438 * 23 22 21 47 47 H 1.07998 * 125.90038 * 179.97438 * 24 23 22 48 48 H 1.08997 * 113.61916 * 220.02330 * 26 18 17 49 49 H 1.09007 * 113.61365 * 89.11927 * 26 18 17 50 50 H 1.07994 * 127.02592 * 179.97438 * 27 11 10 51 51 H 1.07998 * 125.43589 * 180.02562 * 28 27 11 52 52 H 1.07991 * 120.03247 * 180.02562 * 30 7 6 53 53 H 1.07997 * 119.96817 * 179.97438 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7216 -0.0357 -2.1426 6 6 3.1880 -0.6864 -3.2684 7 6 2.8536 -2.0146 -3.4891 8 8 3.3070 -2.6554 -4.5984 9 6 4.1235 -1.9003 -5.4957 10 6 4.5284 -2.7691 -6.6585 11 6 3.8395 -2.9099 -7.8275 12 6 2.5727 -2.2550 -8.1994 13 8 2.0310 -1.4928 -7.4218 14 7 2.0146 -2.5007 -9.4013 15 6 0.7556 -1.8492 -9.7713 16 1 0.1559 -1.5653 -8.9065 17 6 0.9257 -0.7195 -10.8006 18 6 0.7507 -1.7953 -11.8892 19 1 1.6861 -2.2652 -12.1931 20 6 -0.0971 -1.3339 -13.0764 21 7 0.7624 -0.6759 -14.0637 22 6 0.8681 -1.0041 -15.3684 23 6 1.7615 -0.1602 -15.9348 24 6 2.2177 0.7132 -14.9421 25 7 1.6156 0.4084 -13.8213 26 6 -0.0373 -2.6081 -10.8485 27 6 4.6249 -3.8515 -8.6388 28 6 5.6907 -4.1808 -7.8932 29 8 5.6266 -3.5284 -6.7220 30 6 2.0559 -2.6877 -2.5752 31 6 1.5963 -2.0340 -1.4482 32 1 -0.3933 0.4418 0.7650 33 1 1.7923 -0.5138 0.8900 34 1 3.5346 1.7703 0.0321 35 1 1.5616 2.4679 -1.2086 36 1 2.9776 0.9996 -1.9728 37 1 3.8089 -0.1603 -3.9785 38 1 3.5616 -1.0413 -5.8627 39 1 5.0149 -1.5546 -4.9723 40 1 2.4469 -3.1083 -10.0217 41 1 0.1209 0.0152 -10.7795 42 1 1.9162 -0.2644 -10.7897 43 1 -0.5815 -2.1965 -13.5339 44 1 -0.8558 -0.6323 -12.7301 45 1 0.3355 -1.7982 -15.8705 46 1 2.0687 -0.1615 -16.9702 47 1 2.9393 1.5051 -15.0783 48 1 0.1761 -3.6766 -10.8761 49 1 -1.1050 -2.3887 -10.8404 50 1 4.3912 -4.2062 -9.6317 51 1 6.4774 -4.8586 -8.1902 52 1 1.7945 -3.7218 -2.7445 53 1 0.9750 -2.5575 -0.7367 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_4549634.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:36:56 Heat of formation + Delta-G solvation = 60.922880 kcal Electronic energy + Delta-G solvation = -37557.782959 eV Core-core repulsion = 32559.584056 eV Total energy + Delta-G solvation = -4998.198903 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 410.172 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -43.82094 -42.07519 -41.44477 -41.21705 -39.50675 -39.21076 -37.27727 -35.23591 -34.27307 -33.35600 -32.93231 -32.16231 -31.59024 -30.96333 -28.79306 -27.92369 -26.76805 -26.22553 -25.27075 -24.07387 -23.86111 -22.52618 -22.26851 -21.91820 -21.66628 -21.08555 -20.29628 -19.67463 -19.30157 -18.38846 -18.18479 -17.76294 -17.39508 -17.21118 -17.08412 -16.80932 -16.75665 -16.40520 -16.15256 -15.98033 -15.76846 -15.65874 -15.46359 -15.07454 -14.89803 -14.80333 -14.61854 -14.44833 -14.33419 -14.09135 -13.94112 -13.89779 -13.72037 -13.59705 -13.49601 -13.43971 -13.25899 -12.86020 -12.58014 -12.29307 -12.21966 -12.13148 -11.90874 -11.74088 -11.59817 -11.29455 -11.27614 -11.07123 -10.35446 -10.32655 -10.23508 -10.22954 -9.92566 -9.49222 -9.37503 -4.97979 -0.15456 0.06808 0.12563 0.94125 1.00946 1.29015 1.39412 1.60937 1.66802 1.90094 1.95119 1.95636 2.02050 2.33212 2.45959 3.22068 3.29571 3.37429 3.41038 3.48835 3.51427 3.59473 3.64045 3.67470 3.74469 3.77888 3.89220 3.96920 3.99076 4.08235 4.09988 4.19370 4.27808 4.33654 4.35305 4.38422 4.41699 4.47687 4.54496 4.64394 4.69515 4.70420 4.76314 4.76691 4.79093 4.90859 4.96327 4.98535 4.99811 5.04917 5.08337 5.15652 5.18046 5.30821 5.46915 5.51713 5.74901 5.78595 6.08398 6.19136 6.32585 6.79206 6.92017 6.99756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.072 4.072 3 Si 0.773 3.227 4 C -0.128 4.128 5 C -0.099 4.099 6 C -0.207 4.207 7 C 0.124 3.876 8 O -0.317 6.317 9 C 0.135 3.865 10 C 0.040 3.960 11 C -0.223 4.223 12 C 0.584 3.416 13 O -0.573 6.573 14 N -0.689 5.689 15 C 0.109 3.891 16 H 0.084 0.916 17 C -0.135 4.135 18 C -0.107 4.107 19 H 0.090 0.910 20 C 0.135 3.865 21 N -0.375 5.375 22 C 0.053 3.947 23 C -0.293 4.293 24 C 0.025 3.975 25 N -0.332 5.332 26 C -0.115 4.115 27 C -0.197 4.197 28 C -0.008 4.008 29 O -0.176 6.176 30 C -0.155 4.155 31 C -0.052 4.052 32 H 0.404 0.596 33 H 0.099 0.901 34 H -0.287 1.287 35 H -0.303 1.303 36 H 0.122 0.878 37 H 0.142 0.858 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.414 0.586 41 H 0.090 0.910 42 H 0.047 0.953 43 H 0.132 0.868 44 H 0.087 0.913 45 H 0.207 0.793 46 H 0.160 0.840 47 H 0.192 0.808 48 H 0.095 0.905 49 H 0.119 0.881 50 H 0.192 0.808 51 H 0.256 0.744 52 H 0.145 0.855 53 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.470 -4.784 -2.422 5.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.182 4.182 3 Si 0.680 3.320 4 C -0.128 4.128 5 C -0.117 4.117 6 C -0.226 4.226 7 C 0.079 3.921 8 O -0.231 6.231 9 C 0.060 3.940 10 C -0.013 4.013 11 C -0.228 4.228 12 C 0.373 3.627 13 O -0.454 6.454 14 N -0.340 5.340 15 C 0.004 3.996 16 H 0.102 0.898 17 C -0.174 4.174 18 C -0.126 4.126 19 H 0.108 0.892 20 C 0.015 3.985 21 N -0.158 5.158 22 C -0.093 4.093 23 C -0.322 4.322 24 C -0.161 4.161 25 N -0.154 5.154 26 C -0.153 4.153 27 C -0.216 4.216 28 C -0.074 4.074 29 O -0.071 6.071 30 C -0.174 4.174 31 C -0.069 4.069 32 H 0.255 0.745 33 H 0.117 0.883 34 H -0.215 1.215 35 H -0.231 1.231 36 H 0.139 0.861 37 H 0.159 0.841 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.251 0.749 41 H 0.108 0.892 42 H 0.066 0.934 43 H 0.150 0.850 44 H 0.106 0.894 45 H 0.224 0.776 46 H 0.177 0.823 47 H 0.208 0.792 48 H 0.114 0.886 49 H 0.137 0.863 50 H 0.209 0.791 51 H 0.271 0.729 52 H 0.163 0.837 53 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.351 -3.985 -1.345 4.220 hybrid contribution 0.695 -0.349 -1.816 1.975 sum 0.344 -4.334 -3.161 5.375 Atomic orbital electron populations 1.86446 1.17223 1.82352 1.51435 1.24722 0.85846 1.10591 0.97001 0.94564 0.77278 0.75597 0.84587 1.19680 1.00500 0.95281 0.97375 1.20816 0.98051 0.98771 0.94026 1.21303 1.06252 0.94379 1.00659 1.19138 0.94864 0.91436 0.86626 1.86046 1.65236 1.40272 1.31546 1.21097 0.95278 0.91310 0.86278 1.21935 0.87165 0.96188 0.95969 1.21369 0.98466 1.05798 0.97153 1.17470 0.83330 0.80188 0.81728 1.90785 1.64191 1.38450 1.51983 1.45306 1.24488 1.47587 1.16608 1.21947 0.85239 0.94956 0.97493 0.89788 1.23410 1.01976 0.96679 0.95353 1.22797 0.99485 0.97227 0.93086 0.89165 1.22058 0.90745 0.97807 0.87928 1.48985 1.33681 1.24919 1.08207 1.23203 0.99952 1.01329 0.84844 1.21851 1.06329 1.01939 1.02061 1.24302 1.00172 1.00829 0.90762 1.77343 1.09097 1.04442 1.24555 1.23281 1.00553 1.00166 0.91307 1.23236 0.95439 1.00152 1.02736 1.24961 1.01998 0.98219 0.82173 1.83796 1.38362 1.46867 1.38092 1.20748 1.00391 1.01777 0.94440 1.21047 0.96403 0.93417 0.96078 0.74517 0.88332 1.21457 1.23120 0.86113 0.84075 0.88030 0.88342 0.74865 0.89193 0.93428 0.84984 0.89436 0.77600 0.82268 0.79152 0.88632 0.86316 0.79110 0.72868 0.83730 0.82837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.04 12.74 -148.98 -1.90 -2.94 16 2 C -0.07 -0.13 2.81 71.23 0.20 0.07 16 3 Si 0.77 0.43 29.78 68.60 2.04 2.47 16 4 C -0.13 -1.07 5.42 -19.85 -0.11 -1.18 16 5 C -0.10 -1.01 8.66 22.26 0.19 -0.81 16 6 C -0.21 -2.18 9.04 22.37 0.20 -1.98 16 7 C 0.12 1.48 6.69 22.50 0.15 1.63 16 8 O -0.32 -4.03 10.12 -92.43 -0.94 -4.96 16 9 C 0.13 1.20 4.74 71.24 0.34 1.54 16 10 C 0.04 0.33 7.00 25.26 0.18 0.50 16 11 C -0.22 -1.45 6.31 -18.99 -0.12 -1.57 16 12 C 0.58 5.50 7.81 86.65 0.68 6.18 16 13 O -0.57 -9.86 14.46 -4.08 -0.06 -9.92 16 14 N -0.69 -1.44 5.26 -443.35 -2.33 -3.77 16 15 C 0.11 0.15 4.30 45.52 0.20 0.34 16 16 H 0.08 0.53 7.50 -2.39 -0.02 0.51 16 17 C -0.14 -0.29 7.45 31.21 0.23 -0.05 16 18 C -0.11 0.43 3.72 -10.18 -0.04 0.39 16 19 H 0.09 -0.24 8.14 -2.39 -0.02 -0.26 16 20 C 0.13 -0.66 6.35 86.38 0.55 -0.11 16 21 N -0.38 -0.62 3.68 -348.06 -1.28 -1.90 16 22 C 0.05 -0.06 11.45 83.54 0.96 0.90 16 23 C -0.29 -0.45 10.80 21.99 0.24 -0.21 16 24 C 0.02 0.12 12.02 85.24 1.02 1.15 16 25 N -0.33 -2.63 12.42 -57.03 -0.71 -3.34 16 26 C -0.11 0.76 7.38 31.12 0.23 0.99 16 27 C -0.20 0.33 10.60 23.65 0.25 0.58 16 28 C -0.01 0.02 12.03 66.89 0.80 0.83 16 29 O -0.18 -0.82 10.52 4.41 0.05 -0.78 16 30 C -0.16 -1.48 9.99 22.37 0.22 -1.25 16 31 C -0.05 -0.39 9.60 22.26 0.21 -0.18 16 32 H 0.40 -3.68 8.74 -74.06 -0.65 -4.33 16 33 H 0.10 -0.30 7.96 -2.39 -0.02 -0.32 16 34 H -0.29 -1.60 7.11 99.48 0.71 -0.90 16 35 H -0.30 -2.75 7.11 99.48 0.71 -2.05 16 36 H 0.12 1.06 4.87 -2.91 -0.01 1.04 16 37 H 0.14 0.99 6.30 -2.91 -0.02 0.97 16 38 H 0.10 1.13 6.00 -2.39 -0.01 1.11 16 39 H 0.10 0.43 7.66 -2.39 -0.02 0.41 16 40 H 0.41 -1.59 7.87 -92.71 -0.73 -2.32 16 41 H 0.09 0.22 7.90 -2.39 -0.02 0.20 16 42 H 0.05 0.38 8.14 -2.38 -0.02 0.36 16 43 H 0.13 -1.54 8.07 -2.39 -0.02 -1.56 16 44 H 0.09 -0.40 7.85 -2.39 -0.02 -0.42 16 45 H 0.21 -1.93 8.06 -2.91 -0.02 -1.95 16 46 H 0.16 -0.36 8.06 -2.91 -0.02 -0.38 16 47 H 0.19 0.12 8.06 -2.91 -0.02 0.10 16 48 H 0.10 -0.86 8.14 -2.39 -0.02 -0.88 16 49 H 0.12 -1.12 8.10 -2.38 -0.02 -1.14 16 50 H 0.19 -1.70 7.74 -2.91 -0.02 -1.72 16 51 H 0.26 -3.14 8.06 -2.91 -0.02 -3.16 16 52 H 0.14 0.94 8.06 -2.92 -0.02 0.92 16 53 H 0.15 0.49 8.06 -2.91 -0.02 0.47 16 Total: 0.00 -33.79 446.74 1.10 -32.69 By element: Atomic # 1 Polarization: -14.92 SS G_CDS: -0.36 Total: -15.29 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 6.59 Total: 7.74 kcal Atomic # 7 Polarization: -4.69 SS G_CDS: -4.32 Total: -9.01 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -2.85 Total: -18.60 kcal Atomic # 14 Polarization: 0.43 SS G_CDS: 2.04 Total: 2.47 kcal Total: -33.79 1.10 -32.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_4549634.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.614 kcal (2) G-P(sol) polarization free energy of solvation -33.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds