Wall clock time and date at job start Sun Mar 7 2021 04:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35995 * 116.99655 * 2 1 4 4 C 1.39158 * 120.07327 * 180.02562 * 3 2 1 5 5 O 1.35997 * 120.06823 * 359.95404 * 4 3 2 6 6 C 1.42902 * 116.99582 * 180.02562 * 5 4 3 7 7 C 1.50709 * 109.46996 * 179.97438 * 6 5 4 8 8 O 1.21287 * 119.99490 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00033 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00017 * 180.02562 * 9 7 6 11 11 H 1.09001 * 112.85068 * 25.32938 * 10 9 7 12 12 C 1.53776 * 113.61799 * 156.52702 * 10 9 7 13 13 C 1.53781 * 87.07891 * 89.11356 * 12 10 9 14 14 H 1.08998 * 113.61905 * 270.88274 * 13 12 10 15 15 C 1.53007 * 113.61415 * 140.06766 * 13 12 10 16 16 N 1.46496 * 109.47227 * 175.00250 * 15 13 12 17 17 C 1.34946 * 126.04010 * 124.99837 * 16 15 13 18 18 C 1.35316 * 107.74997 * 179.97438 * 17 16 15 19 19 C 1.39875 * 107.91649 * 359.97438 * 18 17 16 20 20 N 1.30833 * 108.20039 * 359.74484 * 19 18 17 21 21 C 1.53778 * 113.61254 * 254.13786 * 10 9 7 22 22 C 1.38563 * 119.85631 * 179.97438 * 4 3 2 23 23 C 1.38241 * 119.99940 * 359.97438 * 22 4 3 24 24 N 1.48001 * 119.92437 * 179.97438 * 23 22 4 25 25 O 1.21800 * 120.00407 * 359.97438 * 24 23 22 26 26 O 1.21806 * 119.99853 * 179.97438 * 24 23 22 27 27 C 1.38247 * 120.14569 * 359.97438 * 23 22 4 28 28 C 1.50707 * 119.92528 * 180.02562 * 27 23 22 29 29 O 1.42896 * 109.46876 * 75.00456 * 28 27 23 30 30 Si 1.86299 * 109.46852 * 194.99907 * 28 27 23 31 31 C 1.38246 * 120.14878 * 359.74916 * 27 23 22 32 32 H 1.08998 * 109.47043 * 59.99780 * 1 2 3 33 33 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47144 * 300.00182 * 1 2 3 35 35 H 1.08998 * 109.47287 * 299.99772 * 6 5 4 36 36 H 1.09001 * 109.47198 * 60.00379 * 6 5 4 37 37 H 0.96994 * 119.99653 * 0.02562 * 9 7 6 38 38 H 1.08994 * 113.61808 * 203.66224 * 12 10 9 39 39 H 1.08999 * 113.61237 * 334.48458 * 12 10 9 40 40 H 1.09003 * 109.46554 * 294.99853 * 15 13 12 41 41 H 1.09000 * 109.46915 * 54.99979 * 15 13 12 42 42 H 1.08005 * 126.12499 * 359.96068 * 17 16 15 43 43 H 1.08001 * 126.04170 * 180.02562 * 18 17 16 44 44 H 1.07998 * 125.89215 * 179.97438 * 19 18 17 45 45 H 1.08996 * 113.61624 * 25.43249 * 21 10 9 46 46 H 1.09004 * 113.61543 * 156.33523 * 21 10 9 47 47 H 1.08005 * 119.99694 * 180.02562 * 22 4 3 48 48 H 1.08996 * 109.47047 * 315.00426 * 28 27 23 49 49 H 0.96694 * 114.00756 * 59.99685 * 29 28 27 50 50 H 1.48504 * 109.99751 * 58.68530 * 30 28 27 51 51 H 1.48502 * 109.99443 * 179.97438 * 30 28 27 52 52 H 1.07997 * 119.99913 * 180.27551 * 31 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 3.4359 1.2864 -0.0005 5 8 4.1795 0.1478 -0.0001 6 6 5.6003 0.3008 -0.0001 7 6 6.2519 -1.0581 0.0010 8 8 5.5670 -2.0590 0.0013 9 7 7.5958 -1.1611 0.0006 10 6 8.2292 -2.4820 0.0012 11 1 7.5934 -3.2565 -0.4280 12 6 9.6607 -2.4790 -0.5605 13 6 10.1382 -2.1906 0.8726 14 1 10.1889 -1.1280 1.1104 15 6 11.4109 -2.9471 1.2585 16 7 11.8497 -2.5179 2.5887 17 6 12.0778 -3.3228 3.6476 18 6 12.4670 -2.5427 4.6825 19 6 12.4777 -1.2156 4.2407 20 7 12.1135 -1.2002 2.9842 21 6 8.8432 -2.8702 1.3566 22 6 4.0602 2.5235 -0.0011 23 6 3.3028 3.6799 -0.0016 24 7 3.9714 5.0003 -0.0016 25 8 5.1876 5.0673 -0.0007 26 8 3.3054 6.0202 -0.0025 27 6 1.9224 3.6058 -0.0021 28 6 1.1015 4.8697 -0.0033 29 8 1.1350 5.4581 -1.3051 30 14 -0.6597 4.4667 0.4508 31 6 1.2932 2.3748 -0.0074 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 5.9065 0.8503 -0.8903 36 1 5.9065 0.8509 0.8897 37 1 8.1434 -0.3605 0.0000 38 1 9.9825 -3.4484 -0.9411 39 1 9.8541 -1.6647 -1.2588 40 1 11.2074 -4.0178 1.2710 41 1 12.1945 -2.7345 0.5313 42 1 11.9689 -4.3971 3.6658 43 1 12.7246 -2.8844 5.6740 44 1 12.7445 -0.3531 4.8334 45 1 8.3774 -2.3707 2.2060 46 1 8.9419 -3.9463 1.4991 47 1 5.1386 2.5841 -0.0019 48 1 1.5128 5.5707 0.7230 49 1 0.7835 4.8890 -2.0032 50 1 -0.7050 3.8250 1.7893 51 1 -1.4794 5.7050 0.4538 52 1 0.2146 2.3197 -0.0123 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_4549636.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:37:01 Heat of formation + Delta-G solvation = 16.631869 kcal Electronic energy + Delta-G solvation = -39941.952819 eV Core-core repulsion = 34495.495299 eV Total energy + Delta-G solvation = -5446.457520 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 419.166 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -43.42942 -42.17913 -42.05350 -41.35353 -40.14420 -39.33190 -39.06224 -37.76130 -37.14924 -35.17323 -33.57780 -32.70084 -32.53718 -31.01370 -30.05840 -28.83796 -28.26736 -27.92604 -26.76086 -25.86631 -24.44748 -23.79827 -23.23223 -22.19535 -21.91856 -21.62036 -20.82112 -20.20317 -19.88082 -19.53348 -18.83367 -18.70664 -18.41049 -18.15304 -17.80550 -17.70831 -17.39388 -16.98938 -16.87738 -16.44029 -16.38592 -16.10853 -15.98223 -15.64575 -15.49675 -15.37793 -15.03743 -14.79500 -14.60323 -14.40229 -14.27511 -14.03145 -13.92674 -13.81454 -13.55311 -13.51248 -13.47290 -13.05067 -12.80325 -12.69226 -12.52850 -12.46151 -12.35481 -12.30137 -12.24358 -12.22470 -11.80509 -11.69389 -11.58077 -11.34840 -11.16567 -10.55101 -10.48405 -10.34370 -10.22639 -9.52253 -9.47374 -5.14706 -1.39434 -0.46374 0.13418 0.27852 1.00318 1.11551 1.17987 1.30293 1.56535 1.67247 1.86775 1.87492 1.92972 1.94880 2.28096 2.95490 3.14361 3.23650 3.36664 3.40825 3.46015 3.49098 3.53077 3.54505 3.74223 3.82337 3.89545 3.90997 3.96935 4.02805 4.08445 4.09051 4.20618 4.21137 4.37978 4.39885 4.40485 4.51101 4.52923 4.62994 4.68852 4.70750 4.72965 4.78699 4.80938 4.90627 4.94993 5.03220 5.11623 5.15949 5.22289 5.45624 5.56479 5.75202 6.03274 6.18676 6.29868 6.43701 6.70553 6.77976 6.98838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 O -0.307 6.307 3 C 0.172 3.828 4 C 0.099 3.901 5 O -0.289 6.289 6 C 0.027 3.973 7 C 0.520 3.480 8 O -0.562 6.562 9 N -0.696 5.696 10 C 0.114 3.886 11 H 0.092 0.908 12 C -0.118 4.118 13 C -0.115 4.115 14 H 0.089 0.911 15 C 0.135 3.865 16 N -0.373 5.373 17 C 0.052 3.948 18 C -0.295 4.295 19 C 0.028 3.972 20 N -0.334 5.334 21 C -0.144 4.144 22 C -0.111 4.111 23 C -0.046 4.046 24 N 0.035 4.965 25 O -0.190 6.190 26 O -0.162 6.162 27 C -0.039 4.039 28 C -0.093 4.093 29 O -0.536 6.536 30 Si 0.789 3.211 31 C -0.162 4.162 32 H 0.094 0.906 33 H 0.122 0.878 34 H 0.080 0.920 35 H 0.130 0.870 36 H 0.123 0.877 37 H 0.418 0.582 38 H 0.121 0.879 39 H 0.089 0.911 40 H 0.125 0.875 41 H 0.092 0.908 42 H 0.204 0.796 43 H 0.158 0.842 44 H 0.194 0.806 45 H 0.049 0.951 46 H 0.105 0.895 47 H 0.181 0.819 48 H 0.114 0.886 49 H 0.393 0.607 50 H -0.272 1.272 51 H -0.290 1.290 52 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.857 -7.559 -2.364 8.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.218 6.218 3 C 0.124 3.876 4 C 0.052 3.948 5 O -0.202 6.202 6 C -0.051 4.051 7 C 0.306 3.694 8 O -0.440 6.440 9 N -0.349 5.349 10 C 0.009 3.991 11 H 0.110 0.890 12 C -0.156 4.156 13 C -0.134 4.134 14 H 0.107 0.893 15 C 0.015 3.985 16 N -0.156 5.156 17 C -0.095 4.095 18 C -0.324 4.324 19 C -0.157 4.157 20 N -0.156 5.156 21 C -0.183 4.183 22 C -0.131 4.131 23 C -0.131 4.131 24 N 0.548 4.452 25 O -0.400 6.400 26 O -0.377 6.377 27 C -0.041 4.041 28 C -0.200 4.200 29 O -0.343 6.343 30 Si 0.691 3.309 31 C -0.181 4.181 32 H 0.113 0.887 33 H 0.140 0.860 34 H 0.098 0.902 35 H 0.147 0.853 36 H 0.140 0.860 37 H 0.255 0.745 38 H 0.139 0.861 39 H 0.108 0.892 40 H 0.143 0.857 41 H 0.111 0.889 42 H 0.220 0.780 43 H 0.176 0.824 44 H 0.211 0.789 45 H 0.068 0.932 46 H 0.124 0.876 47 H 0.198 0.802 48 H 0.132 0.868 49 H 0.242 0.758 50 H -0.198 1.198 51 H -0.217 1.217 52 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -3.257 -8.021 -2.664 9.057 hybrid contribution 1.505 1.005 1.303 2.230 sum -1.752 -7.016 -1.361 7.359 Atomic orbital electron populations 1.23825 0.74614 1.07127 1.04229 1.86336 1.24925 1.24432 1.86148 1.18663 0.89056 0.86455 0.93471 1.17974 0.88893 0.85040 1.02895 1.86298 1.18268 1.26833 1.88758 1.22882 0.78984 0.96086 1.07113 1.20271 0.82956 0.90414 0.75790 1.90777 1.63796 1.39662 1.49737 1.45414 1.05157 1.09963 1.74405 1.21884 0.94628 0.84898 0.97680 0.89022 1.23296 0.91861 1.05237 0.95208 1.22882 0.92728 1.00384 0.97427 0.89302 1.22074 0.96643 1.00567 0.79262 1.48965 1.51359 1.04114 1.11137 1.23154 0.99668 0.99311 0.87337 1.21858 1.15674 0.92816 1.02069 1.24292 0.99377 0.99388 0.92651 1.77234 1.23571 0.99538 1.15288 1.23571 0.95951 1.01950 0.96786 1.20890 1.02921 0.88278 1.00986 1.20554 0.92803 0.81860 1.17843 1.43729 1.00828 1.03462 0.97164 1.94509 0.96537 1.94137 1.54794 1.94573 1.64380 1.25426 1.53321 1.20245 0.90987 0.97753 0.95152 1.25793 1.10705 0.92730 0.90805 1.86667 1.87133 1.44583 1.15913 0.94394 0.71628 0.82164 0.82743 1.21095 1.01818 0.88016 1.07126 0.88740 0.86019 0.90189 0.85291 0.85975 0.74451 0.86080 0.89212 0.85699 0.88947 0.77959 0.82418 0.78879 0.93223 0.87636 0.80231 0.86843 0.75775 1.19782 1.21718 0.78806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.05 9.81 113.37 1.11 1.16 16 2 O -0.31 0.09 10.28 -79.62 -0.82 -0.73 16 3 C 0.17 -0.14 6.70 22.57 0.15 0.01 16 4 C 0.10 0.12 6.70 22.57 0.15 0.27 16 5 O -0.29 -1.14 9.45 -67.10 -0.63 -1.78 16 6 C 0.03 -0.08 5.22 71.24 0.37 0.29 16 7 C 0.52 1.14 7.91 87.66 0.69 1.83 16 8 O -0.56 -7.14 16.12 15.99 0.26 -6.88 16 9 N -0.70 2.69 5.26 -440.04 -2.32 0.37 16 10 C 0.11 -0.42 4.29 45.52 0.20 -0.23 16 11 H 0.09 0.02 7.50 -2.39 -0.02 0.00 16 12 C -0.12 1.08 7.38 31.12 0.23 1.31 16 13 C -0.12 0.68 3.76 -10.17 -0.04 0.64 16 14 H 0.09 -0.18 7.97 -2.39 -0.02 -0.20 16 15 C 0.13 -0.81 6.35 86.38 0.55 -0.26 16 16 N -0.37 -0.36 3.68 -348.05 -1.28 -1.64 16 17 C 0.05 -0.04 11.45 83.54 0.96 0.91 16 18 C -0.29 -0.49 10.80 21.99 0.24 -0.25 16 19 C 0.03 0.12 12.03 85.24 1.03 1.14 16 20 N -0.33 -2.18 12.28 -57.02 -0.70 -2.88 16 21 C -0.14 0.54 7.45 31.21 0.23 0.77 16 22 C -0.11 -0.04 8.54 22.35 0.19 0.15 16 23 C -0.05 -0.19 6.84 36.38 0.25 0.06 16 24 N 0.04 0.37 4.45 -46.47 -0.21 0.16 16 25 O -0.19 -2.25 18.44 18.89 0.35 -1.90 16 26 O -0.16 -2.19 14.62 25.09 0.37 -1.82 16 27 C -0.04 0.01 5.26 -19.86 -0.10 -0.10 16 28 C -0.09 -0.03 1.74 71.24 0.12 0.09 16 29 O -0.54 -0.75 11.80 -129.64 -1.53 -2.28 16 30 Si 0.79 -4.10 29.91 68.60 2.05 -2.05 16 31 C -0.16 0.82 7.65 22.35 0.17 0.99 16 32 H 0.09 -1.45 7.65 -2.39 -0.02 -1.47 16 33 H 0.12 -1.42 8.14 -2.39 -0.02 -1.44 16 34 H 0.08 -1.04 7.68 -2.39 -0.02 -1.06 16 35 H 0.13 -1.18 7.66 -2.39 -0.02 -1.19 16 36 H 0.12 -0.97 7.66 -2.39 -0.02 -0.99 16 37 H 0.42 -3.93 8.70 -92.71 -0.81 -4.74 16 38 H 0.12 -1.50 8.10 -2.39 -0.02 -1.52 16 39 H 0.09 -0.90 8.14 -2.39 -0.02 -0.92 16 40 H 0.13 -1.44 7.78 -2.39 -0.02 -1.46 16 41 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 42 H 0.20 -1.71 8.06 -2.91 -0.02 -1.73 16 43 H 0.16 -0.29 8.06 -2.91 -0.02 -0.31 16 44 H 0.19 -0.10 8.06 -2.91 -0.02 -0.12 16 45 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 46 H 0.11 -0.65 7.91 -2.38 -0.02 -0.67 16 47 H 0.18 -0.65 5.85 -2.91 -0.02 -0.67 16 48 H 0.11 0.60 6.07 -2.39 -0.01 0.59 16 49 H 0.39 -3.42 8.70 -74.06 -0.64 -4.06 16 50 H -0.27 0.49 7.11 99.48 0.71 1.20 16 51 H -0.29 -0.82 7.11 99.48 0.71 -0.11 16 52 H 0.20 -2.44 3.37 -2.91 -0.01 -2.45 16 Total: 0.00 -38.21 439.74 1.64 -36.57 By element: Atomic # 1 Polarization: -23.54 SS G_CDS: -0.39 Total: -23.94 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 6.50 Total: 8.79 kcal Atomic # 7 Polarization: 0.52 SS G_CDS: -4.50 Total: -3.99 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -2.01 Total: -15.38 kcal Atomic # 14 Polarization: -4.10 SS G_CDS: 2.05 Total: -2.05 kcal Total: -38.21 1.64 -36.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_4549636.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.200 kcal (2) G-P(sol) polarization free energy of solvation -38.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds