Wall clock time and date at job start Sun Mar 7 2021 04:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.46997 * 2 1 4 4 C 1.50694 * 109.47118 * 120.00721 * 2 1 3 5 5 C 1.38239 * 119.94937 * 64.99931 * 4 2 1 6 6 C 1.38165 * 120.05713 * 179.97438 * 5 4 2 7 7 N 1.48006 * 120.02491 * 180.02562 * 6 5 4 8 8 O 1.21792 * 120.00408 * 0.02562 * 7 6 5 9 9 O 1.21799 * 119.99520 * 179.97438 * 7 6 5 10 10 C 1.38709 * 119.94666 * 359.97438 * 6 5 4 11 11 O 1.35898 * 120.05865 * 179.97438 * 10 6 5 12 12 C 1.42893 * 116.99893 * 179.97438 * 11 10 6 13 13 C 1.50701 * 109.46981 * 180.02562 * 12 11 10 14 14 O 1.21282 * 120.00040 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00275 * 180.02562 * 13 12 11 16 16 C 1.46502 * 120.00246 * 180.02562 * 15 13 12 17 17 H 1.08998 * 112.84670 * 336.19527 * 16 15 13 18 18 C 1.53776 * 113.61397 * 107.49951 * 16 15 13 19 19 C 1.53775 * 87.08246 * 89.11756 * 18 16 15 20 20 H 1.09006 * 113.69464 * 270.87224 * 19 18 16 21 21 C 1.52998 * 113.62006 * 139.97968 * 19 18 16 22 22 N 1.46501 * 109.47280 * 87.50160 * 21 19 18 23 23 C 1.34946 * 126.04153 * 124.71895 * 22 21 19 24 24 C 1.35313 * 107.74688 * 179.84013 * 23 22 21 25 25 C 1.39864 * 107.92124 * 0.42511 * 24 23 22 26 26 N 1.30838 * 108.20241 * 359.73499 * 25 24 23 27 27 C 1.53776 * 113.61305 * 204.99779 * 16 15 13 28 28 C 1.38753 * 119.88467 * 0.02562 * 10 6 5 29 29 C 1.38126 * 119.94878 * 359.72444 * 28 10 6 30 30 H 0.96708 * 114.00246 * 59.99398 * 1 2 3 31 31 H 1.09004 * 109.46690 * 240.00803 * 2 1 3 32 32 H 1.48506 * 109.99834 * 60.00805 * 3 2 1 33 33 H 1.48502 * 110.00011 * 181.32069 * 3 2 1 34 34 H 1.08008 * 119.96883 * 359.97438 * 5 4 2 35 35 H 1.08997 * 109.47793 * 299.99863 * 12 11 10 36 36 H 1.09001 * 109.47202 * 60.00725 * 12 11 10 37 37 H 0.96999 * 120.00140 * 359.97438 * 15 13 12 38 38 H 1.09005 * 113.61290 * 203.66604 * 18 16 15 39 39 H 1.08998 * 113.61690 * 334.56919 * 18 16 15 40 40 H 1.09001 * 109.47654 * 207.50828 * 21 19 18 41 41 H 1.09005 * 109.46783 * 327.50661 * 21 19 18 42 42 H 1.08003 * 126.11985 * 0.02562 * 23 22 21 43 43 H 1.08006 * 126.03528 * 180.16237 * 24 23 22 44 44 H 1.07997 * 125.89572 * 179.71449 * 25 24 23 45 45 H 1.09001 * 113.61796 * 25.43464 * 27 16 15 46 46 H 1.09004 * 113.61020 * 156.33469 * 27 16 15 47 47 H 1.08000 * 120.02843 * 179.97438 * 28 10 6 48 48 H 1.07992 * 119.97357 * 180.27028 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7105 1.2303 5 6 1.6841 -2.0604 1.3970 6 6 2.1441 -2.7142 2.5239 7 7 1.8795 -4.1595 2.7014 8 8 1.2564 -4.7732 1.8537 9 8 2.2856 -4.7354 3.6948 10 6 2.8549 -2.0151 3.4883 11 8 3.3080 -2.6558 4.5978 12 6 4.0330 -1.8730 5.5483 13 6 4.4527 -2.7463 6.7026 14 8 4.1593 -3.9231 6.7106 15 7 5.1531 -2.2195 7.7264 16 6 5.5616 -3.0686 8.8482 17 1 4.9297 -3.9491 8.9645 18 6 7.0670 -3.3814 8.8677 19 6 7.2421 -2.1022 9.7030 20 1 7.3979 -1.2054 9.1033 21 6 8.2612 -2.2441 10.8353 22 7 9.5996 -1.9284 10.3301 23 6 10.4421 -1.0041 10.8371 24 6 11.5716 -1.0230 10.0923 25 6 11.4103 -1.9852 9.0901 26 7 10.2286 -2.5286 9.2317 27 6 5.7855 -2.2938 10.1575 28 6 3.1018 -0.6603 3.3186 29 6 2.6443 -0.0123 2.1878 30 1 -0.3934 0.4418 -0.7650 31 1 1.7923 -0.5137 -0.8901 32 1 1.5616 2.4678 1.2086 33 1 3.5346 1.7703 -0.0322 34 1 1.1309 -2.6044 0.6456 35 1 4.9179 -1.4509 5.0721 36 1 3.3979 -1.0665 5.9148 37 1 5.3874 -1.2782 7.7202 38 1 7.3164 -4.2940 9.4092 39 1 7.5367 -3.3291 7.8855 40 1 8.0060 -1.5571 11.6422 41 1 8.2466 -3.2672 11.2111 42 1 10.2502 -0.3660 11.6870 43 1 12.4421 -0.4016 10.2425 44 1 12.1358 -2.2360 8.3304 45 1 5.2205 -1.3636 10.2166 46 1 5.6845 -2.9091 11.0516 47 1 3.6546 -0.1136 4.0682 48 1 2.8399 1.0412 2.0533 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_4549638.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:37:06 Heat of formation + Delta-G solvation = 47.191634 kcal Electronic energy + Delta-G solvation = -34986.150104 eV Core-core repulsion = 30015.237567 eV Total energy + Delta-G solvation = -4970.912538 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.151 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.40577 -42.10669 -41.90456 -41.20205 -39.93747 -39.09556 -37.67255 -37.41155 -35.18842 -33.74658 -33.49761 -32.47198 -30.99352 -30.14663 -28.35672 -27.93223 -26.74521 -26.59542 -24.63023 -23.97501 -22.87602 -22.09943 -21.91041 -21.60706 -20.61711 -20.34387 -19.88819 -19.26011 -18.77050 -18.68779 -18.40478 -18.09909 -17.72656 -17.59038 -16.96684 -16.58011 -16.41321 -16.08640 -15.95490 -15.72021 -15.48991 -15.21944 -14.97742 -14.82764 -14.56423 -14.39850 -14.31308 -14.05890 -13.87797 -13.69255 -13.57514 -13.42735 -13.07120 -12.86723 -12.78677 -12.74450 -12.46376 -12.34936 -12.24811 -12.19715 -12.00326 -11.70732 -11.59164 -11.26600 -11.16024 -11.01104 -10.41668 -10.34769 -10.22770 -9.91193 -9.48782 -4.90982 -1.43636 -0.39598 0.02270 0.22444 1.01278 1.06155 1.25866 1.31536 1.67191 1.67707 1.86724 1.90157 1.95354 2.18358 2.94487 3.03894 3.21654 3.31306 3.42148 3.43528 3.47612 3.51359 3.65602 3.72344 3.75442 3.87131 3.90100 4.00700 4.08838 4.10053 4.20424 4.21581 4.34623 4.36851 4.45271 4.46792 4.63817 4.66528 4.71944 4.77685 4.79245 4.91606 4.92340 4.98639 5.01819 5.07992 5.09170 5.16122 5.46461 5.60215 5.75254 6.19725 6.31383 6.35389 6.79589 6.85142 7.02875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.567 6.567 2 C -0.087 4.087 3 Si 0.780 3.220 4 C -0.117 4.117 5 C 0.003 3.997 6 C -0.100 4.100 7 N 0.034 4.966 8 O -0.186 6.186 9 O -0.175 6.175 10 C 0.193 3.807 11 O -0.287 6.287 12 C 0.024 3.976 13 C 0.511 3.489 14 O -0.562 6.562 15 N -0.691 5.691 16 C 0.110 3.890 17 H 0.082 0.918 18 C -0.138 4.138 19 C -0.107 4.107 20 H 0.095 0.905 21 C 0.133 3.867 22 N -0.375 5.375 23 C 0.053 3.947 24 C -0.293 4.293 25 C 0.025 3.975 26 N -0.332 5.332 27 C -0.114 4.114 28 C -0.190 4.190 29 C -0.026 4.026 30 H 0.407 0.593 31 H 0.098 0.902 32 H -0.279 1.279 33 H -0.274 1.274 34 H 0.163 0.837 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.420 0.580 38 H 0.086 0.914 39 H 0.049 0.951 40 H 0.132 0.868 41 H 0.085 0.915 42 H 0.207 0.793 43 H 0.159 0.841 44 H 0.191 0.809 45 H 0.099 0.901 46 H 0.115 0.885 47 H 0.201 0.799 48 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.519 16.604 1.285 16.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.378 6.378 2 C -0.196 4.196 3 Si 0.682 3.318 4 C -0.118 4.118 5 C -0.016 4.016 6 C -0.185 4.185 7 N 0.546 4.454 8 O -0.397 6.397 9 O -0.388 6.388 10 C 0.143 3.857 11 O -0.197 6.197 12 C -0.053 4.053 13 C 0.297 3.703 14 O -0.438 6.438 15 N -0.345 5.345 16 C 0.004 3.996 17 H 0.100 0.900 18 C -0.177 4.177 19 C -0.126 4.126 20 H 0.113 0.887 21 C 0.013 3.987 22 N -0.158 5.158 23 C -0.093 4.093 24 C -0.322 4.322 25 C -0.161 4.161 26 N -0.154 5.154 27 C -0.152 4.152 28 C -0.209 4.209 29 C -0.044 4.044 30 H 0.259 0.741 31 H 0.116 0.884 32 H -0.205 1.205 33 H -0.201 1.201 34 H 0.181 0.819 35 H 0.156 0.844 36 H 0.161 0.839 37 H 0.258 0.742 38 H 0.104 0.896 39 H 0.068 0.932 40 H 0.150 0.850 41 H 0.103 0.897 42 H 0.224 0.776 43 H 0.177 0.823 44 H 0.208 0.792 45 H 0.118 0.882 46 H 0.133 0.867 47 H 0.218 0.782 48 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 2.000 15.570 1.861 15.808 hybrid contribution 0.821 -0.681 0.332 1.118 sum 2.821 14.888 2.193 15.311 Atomic orbital electron populations 1.86448 1.17023 1.82698 1.51600 1.25011 0.86275 1.12348 0.95939 0.93447 0.78001 0.74370 0.85995 1.19683 1.01451 0.92027 0.98630 1.20918 0.92648 0.94734 0.93342 1.20866 1.15276 0.80220 1.02179 1.43782 0.98076 1.03938 0.99626 1.94489 1.39613 1.67610 1.38024 1.94691 1.53948 1.70611 1.19523 1.18866 0.89888 0.91803 0.85127 1.86472 1.67337 1.37670 1.28226 1.23097 0.99907 0.93933 0.88324 1.20422 0.78020 0.88020 0.83856 1.90848 1.55472 1.18676 1.78854 1.45291 1.55437 1.13974 1.19803 1.21915 0.95662 0.94957 0.87022 0.89988 1.23379 0.95240 0.98619 1.00469 1.22775 0.94617 0.98538 0.96657 0.88681 1.22076 0.76002 1.03877 0.96738 1.48995 1.14745 1.28967 1.23075 1.23194 0.90867 0.94503 1.00728 1.21851 1.01970 1.07288 1.01126 1.24298 0.95042 0.96376 1.00353 1.77347 1.09744 1.22430 1.05866 1.23277 0.93780 1.01937 0.96203 1.21670 1.06571 0.90470 1.02151 1.21517 0.91265 1.00649 0.90963 0.74062 0.88435 1.20532 1.20056 0.81913 0.84389 0.83913 0.74162 0.89575 0.93197 0.85007 0.89657 0.77621 0.82330 0.79193 0.88203 0.86709 0.78210 0.82023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 2.28 12.81 -148.98 -1.91 0.38 16 2 C -0.09 0.50 2.79 71.23 0.20 0.70 16 3 Si 0.78 -7.37 29.84 68.60 2.05 -5.32 16 4 C -0.12 0.03 5.39 -19.85 -0.11 -0.08 16 5 C 0.00 0.01 9.19 22.25 0.20 0.22 16 6 C -0.10 -1.02 6.87 36.47 0.25 -0.77 16 7 N 0.03 0.62 4.45 -46.24 -0.21 0.42 16 8 O -0.19 -3.58 18.45 18.90 0.35 -3.24 16 9 O -0.18 -4.12 17.24 25.61 0.44 -3.67 16 10 C 0.19 0.94 6.67 22.51 0.15 1.09 16 11 O -0.29 -2.28 7.68 -63.38 -0.49 -2.77 16 12 C 0.02 -0.09 5.22 71.24 0.37 0.28 16 13 C 0.51 1.98 7.91 87.66 0.69 2.67 16 14 O -0.56 -9.75 16.10 16.00 0.26 -9.49 16 15 N -0.69 2.61 5.26 -440.05 -2.32 0.30 16 16 C 0.11 -0.18 4.32 45.51 0.20 0.02 16 17 H 0.08 0.36 7.46 -2.39 -0.02 0.34 16 18 C -0.14 0.00 7.43 31.12 0.23 0.23 16 19 C -0.11 0.69 3.70 -10.27 -0.04 0.65 16 20 H 0.09 -0.59 8.14 -2.38 -0.02 -0.61 16 21 C 0.13 -0.85 6.35 86.38 0.55 -0.30 16 22 N -0.38 -0.11 3.68 -348.05 -1.28 -1.39 16 23 C 0.05 -0.12 11.45 83.54 0.96 0.83 16 24 C -0.29 -0.15 10.80 21.99 0.24 0.09 16 25 C 0.02 0.10 12.03 85.23 1.02 1.12 16 26 N -0.33 -2.20 12.42 -57.03 -0.71 -2.91 16 27 C -0.11 1.06 7.39 31.12 0.23 1.29 16 28 C -0.19 0.84 9.04 22.37 0.20 1.04 16 29 C -0.03 0.10 8.66 22.26 0.19 0.29 16 30 H 0.41 -5.82 8.74 -74.05 -0.65 -6.47 16 31 H 0.10 -0.88 7.96 -2.38 -0.02 -0.90 16 32 H -0.28 1.16 7.05 99.48 0.70 1.86 16 33 H -0.27 1.49 7.11 99.48 0.71 2.20 16 34 H 0.16 0.74 7.61 -2.91 -0.02 0.72 16 35 H 0.14 -1.58 7.67 -2.39 -0.02 -1.59 16 36 H 0.14 -1.76 7.66 -2.39 -0.02 -1.77 16 37 H 0.42 -4.98 8.70 -92.71 -0.81 -5.79 16 38 H 0.09 0.12 7.90 -2.38 -0.02 0.10 16 39 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 40 H 0.13 -1.73 8.07 -2.39 -0.02 -1.74 16 41 H 0.09 -0.47 7.84 -2.38 -0.02 -0.49 16 42 H 0.21 -2.16 8.06 -2.91 -0.02 -2.18 16 43 H 0.16 -0.50 8.06 -2.91 -0.02 -0.52 16 44 H 0.19 -0.06 8.06 -2.91 -0.02 -0.08 16 45 H 0.10 -1.25 8.14 -2.39 -0.02 -1.27 16 46 H 0.11 -1.28 8.10 -2.38 -0.02 -1.30 16 47 H 0.20 -2.84 6.30 -2.91 -0.02 -2.86 16 48 H 0.16 -1.31 4.86 -2.91 -0.01 -1.33 16 Total: 0.00 -43.11 414.76 1.35 -41.75 By element: Atomic # 1 Polarization: -23.06 SS G_CDS: -0.38 Total: -23.44 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 5.54 Total: 9.38 kcal Atomic # 7 Polarization: 0.92 SS G_CDS: -4.51 Total: -3.59 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -1.35 Total: -18.79 kcal Atomic # 14 Polarization: -7.37 SS G_CDS: 2.05 Total: -5.32 kcal Total: -43.11 1.35 -41.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_4549638.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.947 kcal (2) G-P(sol) polarization free energy of solvation -43.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds