Wall clock time and date at job start Sun Mar 7 2021 04:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86302 * 109.47435 * 2 1 4 4 C 1.50701 * 109.46989 * 240.00033 * 2 1 3 5 5 C 1.38270 * 119.94297 * 299.99894 * 4 2 1 6 6 C 1.38145 * 120.05190 * 179.97438 * 5 4 2 7 7 C 1.38728 * 119.95019 * 0.02562 * 6 5 4 8 8 O 1.35892 * 120.05917 * 180.02562 * 7 6 5 9 9 C 1.42906 * 117.00297 * 179.97438 * 8 7 6 10 10 F 1.39898 * 109.46697 * 59.99575 * 9 8 7 11 11 F 1.39899 * 109.46985 * 299.99914 * 9 8 7 12 12 C 1.50695 * 109.47045 * 179.97438 * 9 8 7 13 13 O 1.21274 * 120.00413 * 0.27121 * 12 9 8 14 14 N 1.34784 * 119.99635 * 180.02562 * 12 9 8 15 15 C 1.46499 * 119.99971 * 179.97438 * 14 12 9 16 16 H 1.09000 * 112.84831 * 336.19762 * 15 14 12 17 17 C 1.53784 * 113.61633 * 107.50076 * 15 14 12 18 18 C 1.53778 * 87.07731 * 89.11577 * 17 15 14 19 19 H 1.08998 * 113.61801 * 270.88556 * 18 17 15 20 20 C 1.53003 * 113.68574 * 139.99431 * 18 17 15 21 21 N 1.46495 * 109.47231 * 87.46578 * 20 18 17 22 22 C 1.34949 * 126.03870 * 124.99375 * 21 20 18 23 23 C 1.35319 * 107.74762 * 179.97438 * 22 21 20 24 24 C 1.39873 * 107.91933 * 0.02562 * 23 22 21 25 25 N 1.30836 * 108.20105 * 359.74218 * 24 23 22 26 26 C 1.53776 * 113.61726 * 205.00181 * 15 14 12 27 27 C 1.38737 * 119.88399 * 0.26719 * 7 6 5 28 28 C 1.38142 * 119.94223 * 359.43406 * 27 7 6 29 29 H 0.96710 * 113.99864 * 59.99674 * 1 2 3 30 30 H 1.08996 * 109.47126 * 120.00269 * 2 1 3 31 31 H 1.48498 * 110.00138 * 59.99827 * 3 2 1 32 32 H 1.48505 * 110.00076 * 181.32104 * 3 2 1 33 33 H 1.07992 * 119.97075 * 359.97438 * 5 4 2 34 34 H 1.08005 * 120.02149 * 180.02562 * 6 5 4 35 35 H 0.96999 * 120.00044 * 0.02562 * 14 12 9 36 36 H 1.08996 * 113.61761 * 203.66784 * 17 15 14 37 37 H 1.09003 * 113.61097 * 334.57240 * 17 15 14 38 38 H 1.09000 * 109.46892 * 207.46354 * 20 18 17 39 39 H 1.09002 * 109.47228 * 327.46347 * 20 18 17 40 40 H 1.07998 * 126.12817 * 0.02562 * 22 21 20 41 41 H 1.07997 * 126.04426 * 180.02562 * 23 22 21 42 42 H 1.07998 * 125.90144 * 179.97438 * 24 23 22 43 43 H 1.09001 * 113.61142 * 25.42617 * 26 15 14 44 44 H 1.08999 * 113.61755 * 156.24875 * 26 15 14 45 45 H 1.08006 * 120.02568 * 179.72591 * 27 7 6 46 46 H 1.08005 * 119.97104 * 180.26816 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 -1.2305 5 6 1.5965 -2.0342 -1.4481 6 6 2.0553 -2.6875 -2.5756 7 6 2.8529 -2.0144 -3.4896 8 8 3.3050 -2.6547 -4.5997 9 6 4.1210 -1.8994 -5.4973 10 9 5.2659 -1.4567 -4.8261 11 9 3.4000 -0.7964 -5.9670 12 6 4.5254 -2.7681 -6.6603 13 8 4.1477 -3.9191 -6.7178 14 7 5.3030 -2.2644 -7.6393 15 6 5.6966 -3.1090 -8.7697 16 1 5.6717 -4.1726 -8.5322 17 6 4.9814 -2.7525 -10.0836 18 6 6.1315 -1.7672 -10.3505 19 1 5.9576 -0.7719 -9.9416 20 6 6.5899 -1.7382 -11.8100 21 7 5.7783 -0.7745 -12.5576 22 6 6.2457 0.2607 -13.2862 23 6 5.1810 0.9059 -13.8165 24 6 4.0232 0.2424 -13.3971 25 7 4.3803 -0.7680 -12.6467 26 6 7.0009 -2.6600 -9.4494 27 6 3.1923 -0.6880 -3.2658 28 6 2.7259 -0.0374 -2.1400 29 1 -0.3933 0.4418 -0.7651 30 1 1.7923 -0.5139 0.8899 31 1 1.5616 2.4679 1.2084 32 1 3.5347 1.7702 -0.0322 33 1 0.9759 -2.5578 -0.7361 34 1 1.7931 -3.7214 -2.7453 35 1 5.6025 -1.3429 -7.5950 36 1 4.9388 -3.5770 -10.7952 37 1 4.0161 -2.2676 -9.9376 38 1 7.6382 -1.4432 -11.8557 39 1 6.4719 -2.7294 -12.2476 40 1 7.2836 0.5263 -13.4225 41 1 5.2184 1.7787 -14.4514 42 1 3.0097 0.5148 -13.6521 43 1 7.6659 -2.1005 -8.7915 44 1 7.5111 -3.4596 -9.9865 45 1 3.8168 -0.1631 -3.9737 46 1 2.9864 0.9965 -1.9675 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_4549640.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:37:11 Heat of formation + Delta-G solvation = -50.278977 kcal Electronic energy + Delta-G solvation = -34362.616072 eV Core-core repulsion = 29279.585376 eV Total energy + Delta-G solvation = -5083.030696 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.138 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.95631 -48.92520 -42.08146 -41.60352 -41.33562 -39.85016 -39.19840 -37.26400 -35.42359 -33.62228 -32.47832 -32.04567 -30.95010 -29.49616 -28.24250 -26.76267 -26.34833 -24.81303 -24.11630 -22.92097 -22.49732 -21.89276 -21.63198 -20.73426 -20.52404 -19.80411 -19.75208 -18.59442 -18.14336 -17.72990 -17.39839 -16.93942 -16.70532 -16.51700 -16.28331 -16.24552 -15.86838 -15.82517 -15.63619 -15.46272 -15.40666 -15.22397 -15.16684 -14.98202 -14.82739 -14.49590 -14.42799 -14.37615 -14.26091 -13.75260 -13.62513 -13.59119 -13.41994 -13.05867 -12.89619 -12.42076 -12.28647 -12.15952 -11.90817 -11.77726 -11.64113 -11.57282 -11.28450 -10.53146 -10.48545 -10.30080 -10.22420 -9.61311 -9.46094 -5.01897 -0.01684 0.12350 0.39599 0.55803 1.03748 1.29011 1.60812 1.62023 1.70657 1.92758 1.94311 1.97983 2.42883 2.68982 3.15848 3.30223 3.38626 3.46518 3.51649 3.62228 3.62833 3.69874 3.72115 4.00823 4.05944 4.11086 4.17900 4.21607 4.35522 4.37310 4.42831 4.48258 4.49420 4.72101 4.73775 4.79546 4.80194 4.85843 4.89087 4.94807 4.99657 5.01085 5.02419 5.18655 5.31207 5.32706 5.37376 5.75779 5.77986 5.81010 6.22408 6.38569 6.75377 6.81954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.069 4.069 3 Si 0.771 3.229 4 C -0.141 4.141 5 C -0.058 4.058 6 C -0.136 4.136 7 C 0.084 3.916 8 O -0.305 6.305 9 C 0.435 3.565 10 F -0.170 7.170 11 F -0.171 7.171 12 C 0.519 3.481 13 O -0.506 6.506 14 N -0.670 5.670 15 C 0.105 3.895 16 H 0.103 0.897 17 C -0.136 4.136 18 C -0.114 4.114 19 H 0.089 0.911 20 C 0.134 3.866 21 N -0.376 5.376 22 C 0.053 3.947 23 C -0.294 4.294 24 C 0.025 3.975 25 N -0.330 5.330 26 C -0.112 4.112 27 C -0.193 4.193 28 C -0.078 4.078 29 H 0.396 0.604 30 H 0.112 0.888 31 H -0.297 1.297 32 H -0.284 1.284 33 H 0.150 0.850 34 H 0.144 0.856 35 H 0.421 0.579 36 H 0.100 0.900 37 H 0.052 0.948 38 H 0.131 0.869 39 H 0.091 0.909 40 H 0.206 0.794 41 H 0.158 0.842 42 H 0.191 0.809 43 H 0.097 0.903 44 H 0.127 0.873 45 H 0.141 0.859 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.875 4.350 -4.325 8.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.179 4.179 3 Si 0.677 3.323 4 C -0.141 4.141 5 C -0.076 4.076 6 C -0.154 4.154 7 C 0.042 3.958 8 O -0.222 6.222 9 C 0.358 3.642 10 F -0.152 7.152 11 F -0.152 7.152 12 C 0.297 3.703 13 O -0.379 6.379 14 N -0.323 5.323 15 C 0.001 3.999 16 H 0.121 0.879 17 C -0.174 4.174 18 C -0.134 4.134 19 H 0.108 0.892 20 C 0.014 3.986 21 N -0.158 5.158 22 C -0.093 4.093 23 C -0.323 4.323 24 C -0.161 4.161 25 N -0.152 5.152 26 C -0.151 4.151 27 C -0.212 4.212 28 C -0.095 4.095 29 H 0.246 0.754 30 H 0.130 0.870 31 H -0.225 1.225 32 H -0.211 1.211 33 H 0.168 0.832 34 H 0.162 0.838 35 H 0.259 0.741 36 H 0.118 0.882 37 H 0.071 0.929 38 H 0.149 0.851 39 H 0.109 0.891 40 H 0.223 0.777 41 H 0.176 0.824 42 H 0.208 0.792 43 H 0.116 0.884 44 H 0.145 0.855 45 H 0.159 0.841 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 5.842 2.533 -2.702 6.917 hybrid contribution 0.213 0.827 -0.267 0.895 sum 6.055 3.360 -2.968 7.534 Atomic orbital electron populations 1.86474 1.17038 1.82135 1.50533 1.25124 0.85386 1.10619 0.96748 0.93756 0.77942 0.75538 0.85060 1.20506 1.00307 0.95408 0.97918 1.21051 0.97065 0.93785 0.95665 1.20707 0.99249 1.01657 0.93796 1.19253 0.97401 0.92536 0.86645 1.86645 1.63975 1.39296 1.32275 1.21730 0.76756 0.79429 0.86323 1.93194 1.50557 1.89838 1.81602 1.93200 1.78165 1.55344 1.88504 1.19390 0.80942 0.87141 0.82839 1.90853 1.53216 1.17423 1.76446 1.45442 1.49080 1.16946 1.20805 1.22229 0.97935 0.95573 0.84119 0.87903 1.23414 0.98036 0.99737 0.96237 1.22835 0.97050 0.99111 0.94356 0.89227 1.22069 0.94542 0.92088 0.89866 1.49000 1.04302 1.23708 1.38826 1.23181 1.01720 0.89622 0.94823 1.21853 0.91509 1.07120 1.11829 1.24297 1.01292 0.93700 0.96768 1.77325 0.91170 1.23109 1.23593 1.23323 0.94485 1.00191 0.97065 1.21607 1.04793 0.93306 1.01469 1.21028 0.95799 1.00236 0.92423 0.75413 0.87024 1.22482 1.21094 0.83216 0.83774 0.74066 0.88206 0.92930 0.85078 0.89078 0.77697 0.82431 0.79172 0.88417 0.85505 0.84108 0.82847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.20 12.77 -148.98 -1.90 -1.71 16 2 C -0.07 0.07 2.82 71.24 0.20 0.27 16 3 Si 0.77 -1.94 29.78 68.60 2.04 0.10 16 4 C -0.14 -0.08 5.39 -19.85 -0.11 -0.19 16 5 C -0.06 -0.11 9.60 22.25 0.21 0.11 16 6 C -0.14 -0.61 9.99 22.36 0.22 -0.39 16 7 C 0.08 0.57 6.48 22.51 0.15 0.71 16 8 O -0.30 -2.81 9.60 -73.30 -0.70 -3.52 16 9 C 0.44 2.12 2.05 71.23 0.15 2.27 16 10 F -0.17 -0.48 15.27 44.97 0.69 0.21 16 11 F -0.17 -0.58 15.31 44.97 0.69 0.10 16 12 C 0.52 2.70 7.34 87.65 0.64 3.34 16 13 O -0.51 -6.36 16.10 16.02 0.26 -6.11 16 14 N -0.67 1.40 5.26 -440.04 -2.32 -0.92 16 15 C 0.11 -0.40 4.32 45.52 0.20 -0.21 16 16 H 0.10 -0.10 7.47 -2.39 -0.02 -0.12 16 17 C -0.14 0.32 7.43 31.12 0.23 0.55 16 18 C -0.11 0.83 3.70 -10.27 -0.04 0.79 16 19 H 0.09 -0.49 8.14 -2.39 -0.02 -0.51 16 20 C 0.13 -1.02 6.35 86.38 0.55 -0.47 16 21 N -0.38 0.10 3.68 -348.06 -1.28 -1.18 16 22 C 0.05 -0.13 11.45 83.54 0.96 0.83 16 23 C -0.29 -0.15 10.80 21.99 0.24 0.08 16 24 C 0.02 0.09 12.03 85.24 1.03 1.12 16 25 N -0.33 -1.98 12.42 -57.02 -0.71 -2.68 16 26 C -0.11 1.23 7.39 31.12 0.23 1.46 16 27 C -0.19 -0.68 8.26 22.37 0.18 -0.50 16 28 C -0.08 -0.02 8.66 22.25 0.19 0.17 16 29 H 0.40 -3.21 8.70 -74.05 -0.64 -3.85 16 30 H 0.11 -0.03 7.96 -2.39 -0.02 -0.05 16 31 H -0.30 -1.47 7.11 99.48 0.71 -0.76 16 32 H -0.28 -0.57 7.11 99.48 0.71 0.14 16 33 H 0.15 -0.10 8.06 -2.91 -0.02 -0.12 16 34 H 0.14 0.40 8.06 -2.91 -0.02 0.38 16 35 H 0.42 -2.96 8.70 -92.71 -0.81 -3.77 16 36 H 0.10 -0.26 7.90 -2.39 -0.02 -0.28 16 37 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.13 -1.83 8.07 -2.39 -0.02 -1.85 16 39 H 0.09 -0.71 7.85 -2.39 -0.02 -0.73 16 40 H 0.21 -2.14 8.06 -2.91 -0.02 -2.17 16 41 H 0.16 -0.46 8.06 -2.91 -0.02 -0.49 16 42 H 0.19 -0.10 8.06 -2.91 -0.02 -0.12 16 43 H 0.10 -1.27 8.14 -2.39 -0.02 -1.29 16 44 H 0.13 -1.80 8.10 -2.39 -0.02 -1.82 16 45 H 0.14 0.24 5.10 -2.91 -0.01 0.23 16 46 H 0.15 -0.70 4.87 -2.91 -0.01 -0.71 16 Total: 0.00 -25.12 397.92 1.64 -23.48 By element: Atomic # 1 Polarization: -17.37 SS G_CDS: -0.35 Total: -17.73 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 5.23 Total: 9.95 kcal Atomic # 7 Polarization: -0.48 SS G_CDS: -4.30 Total: -4.78 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: -2.35 Total: -11.33 kcal Atomic # 9 Polarization: -1.06 SS G_CDS: 1.38 Total: 0.31 kcal Atomic # 14 Polarization: -1.94 SS G_CDS: 2.04 Total: 0.10 kcal Total: -25.12 1.64 -23.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_4549640.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.803 kcal (2) G-P(sol) polarization free energy of solvation -25.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds