Wall clock time and date at job start Sun Mar 7 2021 04:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86307 * 109.47119 * 2 1 4 4 C 1.50698 * 109.47383 * 119.99571 * 2 1 3 5 5 C 1.38244 * 119.97515 * 245.00537 * 4 2 1 6 6 C 1.38285 * 120.10971 * 179.97438 * 5 4 2 7 7 C 1.38122 * 120.05986 * 0.03707 * 6 5 4 8 8 C 1.38751 * 119.94258 * 359.97438 * 7 6 5 9 9 O 1.35909 * 120.05697 * 180.02562 * 8 7 6 10 10 C 1.42897 * 116.99814 * 0.02562 * 9 8 7 11 11 C 1.50696 * 109.46960 * 180.02562 * 10 9 8 12 12 O 1.21280 * 120.00487 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99783 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99665 * 179.97438 * 13 11 10 15 15 H 1.08994 * 112.90940 * 336.24759 * 14 13 11 16 16 C 1.53779 * 113.61484 * 107.49929 * 14 13 11 17 17 C 1.53785 * 87.08093 * 89.11287 * 16 14 13 18 18 H 1.09002 * 113.61570 * 270.88522 * 17 16 14 19 19 C 1.52995 * 113.69093 * 139.99088 * 17 16 14 20 20 N 1.46500 * 109.47108 * 85.93603 * 19 17 16 21 21 C 1.34957 * 126.03656 * 124.71979 * 20 19 17 22 22 C 1.35318 * 107.74253 * 179.83870 * 21 20 19 23 23 C 1.39864 * 107.92189 * 0.42193 * 22 21 20 24 24 N 1.30845 * 108.20544 * 359.73636 * 23 22 21 25 25 C 1.53781 * 87.08241 * 25.43228 * 17 16 14 26 26 C 1.38172 * 119.96948 * 65.29550 * 4 2 1 27 27 H 0.96699 * 114.00302 * 300.00198 * 1 2 3 28 28 H 1.09000 * 109.47604 * 240.00049 * 2 1 3 29 29 H 1.48499 * 110.00076 * 178.67992 * 3 2 1 30 30 H 1.48503 * 109.99507 * 299.99572 * 3 2 1 31 31 H 1.07999 * 119.94181 * 359.97438 * 5 4 2 32 32 H 1.08004 * 119.97272 * 180.02562 * 6 5 4 33 33 H 1.07996 * 120.02902 * 180.02562 * 7 6 5 34 34 H 1.09003 * 109.47245 * 60.00050 * 10 9 8 35 35 H 1.09007 * 109.46941 * 300.00082 * 10 9 8 36 36 H 0.96996 * 120.00382 * 359.97438 * 13 11 10 37 37 H 1.09003 * 113.61775 * 334.57164 * 16 14 13 38 38 H 1.08996 * 113.61960 * 203.65890 * 16 14 13 39 39 H 1.09005 * 109.47501 * 205.93599 * 19 17 16 40 40 H 1.09004 * 109.47494 * 325.93611 * 19 17 16 41 41 H 1.07997 * 126.12591 * 359.97438 * 21 20 19 42 42 H 1.07997 * 126.03611 * 180.15339 * 22 21 20 43 43 H 1.07996 * 125.89869 * 179.75774 * 23 22 21 44 44 H 1.09005 * 113.61302 * 89.11252 * 25 17 16 45 45 H 1.08993 * 113.62030 * 220.02098 * 25 17 16 46 46 H 1.08003 * 120.02749 * 0.02562 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 2.6386 -0.0115 2.1910 6 6 3.1005 -0.6604 3.3214 7 6 2.8567 -2.0090 3.4932 8 6 2.1472 -2.7127 2.5306 9 8 1.9056 -4.0397 2.6975 10 6 2.4109 -4.6463 3.8885 11 6 2.0496 -6.1092 3.8994 12 8 1.4208 -6.5855 2.9782 13 7 2.4243 -6.8882 4.9335 14 6 2.0725 -8.3104 4.9442 15 1 1.2025 -8.5369 4.3280 16 6 3.2684 -9.2427 4.6882 17 6 3.5002 -9.2338 6.2084 18 1 4.1522 -8.4281 6.5460 19 6 3.8970 -10.5973 6.7778 20 7 5.3474 -10.7701 6.6655 21 6 6.1936 -11.0559 7.6771 22 6 7.4417 -11.1361 7.1606 23 6 7.3566 -10.8815 5.7879 24 7 6.1016 -10.6619 5.4900 25 6 2.0026 -8.9169 6.3557 26 6 1.6898 -2.0608 1.3949 27 1 -0.3934 0.4417 0.7650 28 1 1.7924 -0.5138 -0.8900 29 1 3.5345 1.7704 0.0321 30 1 1.5614 2.4678 -1.2086 31 1 2.8308 1.0429 2.0582 32 1 3.6525 -0.1122 4.0706 33 1 3.2173 -2.5152 4.3765 34 1 1.9737 -4.1572 4.7591 35 1 3.4954 -4.5400 3.9185 36 1 2.9269 -6.5074 5.6705 37 1 4.0732 -8.7750 4.1211 38 1 2.9846 -10.2191 4.2956 39 1 3.6047 -10.6522 7.8265 40 1 3.3928 -11.3854 6.2184 41 1 5.9229 -11.1975 8.7130 42 1 8.3447 -11.3537 7.7117 43 1 8.1838 -10.8686 5.0938 44 1 1.3727 -9.8042 6.4189 45 1 1.7854 -8.1861 7.1347 46 1 1.1416 -2.6074 0.6417 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_4860298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:37:21 Heat of formation + Delta-G solvation = 39.252842 kcal Electronic energy + Delta-G solvation = -28342.523412 eV Core-core repulsion = 24202.283058 eV Total energy + Delta-G solvation = -4140.240354 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.07735 -41.66755 -41.02660 -39.69732 -38.81769 -37.24497 -35.16814 -33.57466 -32.49599 -31.67993 -30.95351 -29.59630 -28.22438 -26.82372 -26.72154 -24.33410 -23.70245 -22.83120 -21.90628 -21.76410 -21.55243 -20.37455 -19.36222 -18.63201 -18.10529 -17.69137 -17.51543 -17.36283 -17.03225 -16.69817 -16.36600 -16.19623 -15.87337 -15.59607 -15.42876 -15.09282 -14.90283 -14.82294 -14.68193 -14.39396 -14.20909 -14.05965 -13.74003 -13.61727 -13.43937 -13.41083 -12.95263 -12.84597 -12.63352 -12.22158 -12.17350 -12.03651 -11.71010 -11.69396 -11.58184 -11.25445 -11.10747 -10.50468 -10.33624 -10.21517 -9.96461 -9.47671 -9.31703 -5.00140 0.18028 0.36283 1.02365 1.25799 1.33393 1.42910 1.65157 1.68968 1.96403 1.96608 2.52328 2.64721 3.32648 3.43716 3.44683 3.51369 3.66094 3.67039 3.74702 3.81265 3.94802 4.00321 4.03135 4.10061 4.10130 4.22522 4.22855 4.31960 4.35589 4.45882 4.47169 4.60798 4.64887 4.72935 4.78838 4.80694 4.92723 4.95183 4.99761 5.03168 5.10538 5.17168 5.21756 5.34489 5.42274 5.48620 5.67334 5.76298 6.20856 6.22091 6.38995 6.73902 6.80623 7.03693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.087 4.087 3 Si 0.798 3.202 4 C -0.085 4.085 5 C -0.154 4.154 6 C -0.069 4.069 7 C -0.202 4.202 8 C 0.112 3.888 9 O -0.324 6.324 10 C 0.040 3.960 11 C 0.514 3.486 12 O -0.573 6.573 13 N -0.692 5.692 14 C 0.109 3.891 15 H 0.082 0.918 16 C -0.138 4.138 17 C -0.108 4.108 18 H 0.094 0.906 19 C 0.133 3.867 20 N -0.375 5.375 21 C 0.053 3.947 22 C -0.293 4.293 23 C 0.024 3.976 24 N -0.332 5.332 25 C -0.113 4.113 26 C -0.151 4.151 27 H 0.396 0.604 28 H 0.099 0.901 29 H -0.281 1.281 30 H -0.301 1.301 31 H 0.153 0.847 32 H 0.165 0.835 33 H 0.160 0.840 34 H 0.130 0.870 35 H 0.122 0.878 36 H 0.420 0.580 37 H 0.048 0.952 38 H 0.086 0.914 39 H 0.132 0.868 40 H 0.086 0.914 41 H 0.207 0.793 42 H 0.159 0.841 43 H 0.191 0.809 44 H 0.116 0.884 45 H 0.099 0.901 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.251 2.738 13.284 13.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.196 4.196 3 Si 0.702 3.298 4 C -0.085 4.085 5 C -0.172 4.172 6 C -0.087 4.087 7 C -0.221 4.221 8 C 0.067 3.933 9 O -0.238 6.238 10 C -0.038 4.038 11 C 0.300 3.700 12 O -0.451 6.451 13 N -0.345 5.345 14 C 0.004 3.996 15 H 0.101 0.899 16 C -0.177 4.177 17 C -0.127 4.127 18 H 0.112 0.888 19 C 0.013 3.987 20 N -0.158 5.158 21 C -0.093 4.093 22 C -0.322 4.322 23 C -0.161 4.161 24 N -0.154 5.154 25 C -0.152 4.152 26 C -0.170 4.170 27 H 0.246 0.754 28 H 0.116 0.884 29 H -0.208 1.208 30 H -0.229 1.229 31 H 0.170 0.830 32 H 0.183 0.817 33 H 0.178 0.822 34 H 0.148 0.852 35 H 0.139 0.861 36 H 0.258 0.742 37 H 0.067 0.933 38 H 0.105 0.895 39 H 0.150 0.850 40 H 0.104 0.896 41 H 0.224 0.776 42 H 0.177 0.823 43 H 0.208 0.792 44 H 0.134 0.866 45 H 0.118 0.882 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.259 2.806 10.630 11.066 hybrid contribution 1.059 -1.131 0.103 1.553 sum 2.318 1.675 10.733 11.107 Atomic orbital electron populations 1.86481 1.17350 1.82332 1.50443 1.25452 0.85340 1.11992 0.96806 0.93560 0.77679 0.73943 0.84575 1.20220 0.98239 0.92963 0.97115 1.21224 1.00543 1.00641 0.94783 1.21357 0.96696 0.93444 0.97210 1.21634 1.03479 0.96467 1.00503 1.19216 0.96413 0.82249 0.95429 1.86125 1.74662 1.21000 1.41994 1.22705 1.02377 0.89955 0.88779 1.20598 0.78679 0.88658 0.82064 1.90766 1.41095 1.76045 1.37211 1.45333 1.57344 1.08924 1.22930 1.21926 0.98055 0.79683 0.99974 0.89937 1.23370 0.97516 0.99875 0.96901 1.22778 0.97553 0.96897 0.95467 0.88770 1.22071 0.73938 0.97803 1.04842 1.48995 1.08070 1.53792 1.04911 1.23201 0.90256 0.99701 0.96132 1.21851 0.99063 1.16541 0.94792 1.24297 0.95007 0.99476 0.97309 1.77346 1.04860 1.25425 1.07773 1.23274 0.94621 1.02363 0.94894 1.20310 1.04432 0.94708 0.97575 0.75420 0.88378 1.20782 1.22938 0.83005 0.81732 0.82230 0.85232 0.86087 0.74213 0.93311 0.89541 0.84977 0.89587 0.77589 0.82336 0.79212 0.86619 0.88210 0.87251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.13 12.84 -148.98 -1.91 -4.04 16 2 C -0.09 -0.22 2.80 71.24 0.20 -0.02 16 3 Si 0.80 -1.34 29.80 68.60 2.04 0.70 16 4 C -0.08 -0.25 5.35 -19.88 -0.11 -0.36 16 5 C -0.15 0.31 8.67 22.28 0.19 0.51 16 6 C -0.07 0.28 10.04 22.25 0.22 0.51 16 7 C -0.20 0.40 9.04 22.36 0.20 0.60 16 8 C 0.11 0.61 6.69 22.51 0.15 0.77 16 9 O -0.32 -2.78 9.67 -73.49 -0.71 -3.49 16 10 C 0.04 -0.05 5.22 71.23 0.37 0.32 16 11 C 0.51 2.43 7.91 87.66 0.69 3.12 16 12 O -0.57 -9.75 16.10 16.01 0.26 -9.49 16 13 N -0.69 1.98 5.26 -440.03 -2.32 -0.34 16 14 C 0.11 -0.15 4.32 45.52 0.20 0.05 16 15 H 0.08 0.34 7.47 -2.39 -0.02 0.33 16 16 C -0.14 -0.03 7.43 31.12 0.23 0.20 16 17 C -0.11 0.67 3.70 -10.27 -0.04 0.63 16 18 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 19 C 0.13 -0.85 6.34 86.38 0.55 -0.30 16 20 N -0.37 -0.17 3.68 -348.05 -1.28 -1.45 16 21 C 0.05 -0.12 11.45 83.54 0.96 0.84 16 22 C -0.29 -0.22 10.80 21.99 0.24 0.02 16 23 C 0.02 0.10 12.03 85.23 1.02 1.13 16 24 N -0.33 -2.27 12.42 -57.03 -0.71 -2.98 16 25 C -0.11 1.04 7.39 31.12 0.23 1.27 16 26 C -0.15 -1.19 9.63 22.37 0.22 -0.97 16 27 H 0.40 -2.02 8.70 -74.06 -0.64 -2.66 16 28 H 0.10 0.49 7.96 -2.39 -0.02 0.47 16 29 H -0.28 -0.64 7.11 99.48 0.71 0.07 16 30 H -0.30 -1.82 7.11 99.48 0.71 -1.11 16 31 H 0.15 -1.10 4.90 -2.91 -0.01 -1.12 16 32 H 0.17 -1.76 8.06 -2.91 -0.02 -1.78 16 33 H 0.16 -1.42 6.30 -2.91 -0.02 -1.44 16 34 H 0.13 -1.13 7.66 -2.39 -0.02 -1.15 16 35 H 0.12 -0.87 7.66 -2.38 -0.02 -0.89 16 36 H 0.42 -4.37 8.70 -92.71 -0.81 -5.17 16 37 H 0.05 0.28 8.14 -2.39 -0.02 0.27 16 38 H 0.09 0.12 7.92 -2.39 -0.02 0.10 16 39 H 0.13 -1.73 8.07 -2.38 -0.02 -1.75 16 40 H 0.09 -0.49 7.88 -2.39 -0.02 -0.51 16 41 H 0.21 -2.14 8.06 -2.91 -0.02 -2.16 16 42 H 0.16 -0.46 8.06 -2.91 -0.02 -0.48 16 43 H 0.19 -0.01 8.06 -2.91 -0.02 -0.03 16 44 H 0.12 -1.31 8.10 -2.38 -0.02 -1.32 16 45 H 0.10 -1.23 8.14 -2.39 -0.02 -1.25 16 46 H 0.11 1.27 8.06 -2.91 -0.02 1.25 16 Total: 0.00 -34.22 388.81 0.51 -33.71 By element: Atomic # 1 Polarization: -20.52 SS G_CDS: -0.39 Total: -20.91 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 5.53 Total: 8.30 kcal Atomic # 7 Polarization: -0.47 SS G_CDS: -4.30 Total: -4.77 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -2.37 Total: -17.03 kcal Atomic # 14 Polarization: -1.34 SS G_CDS: 2.04 Total: 0.70 kcal Total: -34.22 0.51 -33.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_4860298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.960 kcal (2) G-P(sol) polarization free energy of solvation -34.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds