Wall clock time and date at job start Sun Mar 7 2021 04:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35984 * 116.99517 * 2 1 4 4 C 1.38680 * 119.99546 * 179.97438 * 3 2 1 5 5 C 1.38156 * 119.99653 * 179.74706 * 4 3 2 6 6 C 1.50695 * 119.99908 * 180.27694 * 5 4 3 7 7 O 1.42903 * 109.47053 * 255.28231 * 6 5 4 8 8 Si 1.86305 * 109.47187 * 15.27575 * 6 5 4 9 9 C 1.38676 * 119.99847 * 0.55340 * 5 4 3 10 10 O 1.35978 * 119.99772 * 179.71789 * 9 5 4 11 11 C 1.42906 * 117.00118 * 179.72902 * 10 9 5 12 12 C 1.50695 * 109.47045 * 180.02562 * 11 10 9 13 13 O 1.21274 * 120.00413 * 0.27121 * 12 11 10 14 14 N 1.34784 * 119.99635 * 180.02562 * 12 11 10 15 15 C 1.46499 * 119.99971 * 179.97438 * 14 12 11 16 16 H 1.09001 * 112.84942 * 25.33046 * 15 14 12 17 17 C 1.53781 * 113.61562 * 156.52736 * 15 14 12 18 18 C 1.53786 * 87.07827 * 89.11795 * 17 15 14 19 19 H 1.08997 * 113.61112 * 270.80055 * 18 17 15 20 20 C 1.52996 * 113.61039 * 139.98196 * 18 17 15 21 21 N 1.46506 * 109.46930 * 174.99990 * 20 18 17 22 22 C 1.34946 * 126.03865 * 124.71790 * 21 20 18 23 23 C 1.35316 * 107.74428 * 179.84135 * 22 21 20 24 24 C 1.39874 * 107.92200 * 0.41944 * 23 22 21 25 25 N 1.30842 * 108.20156 * 359.74079 * 24 23 22 26 26 C 1.53783 * 113.61722 * 254.13839 * 15 14 12 27 27 C 1.38721 * 120.00044 * 359.45155 * 9 5 4 28 28 C 1.38107 * 120.00102 * 0.27062 * 27 9 5 29 29 H 1.09005 * 109.46589 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47014 * 299.99096 * 1 2 3 31 31 H 1.09000 * 109.47343 * 59.99982 * 1 2 3 32 32 H 1.07995 * 120.00196 * 0.02562 * 4 3 2 33 33 H 1.08998 * 109.47444 * 135.28048 * 6 5 4 34 34 H 0.96696 * 114.00262 * 59.99527 * 7 6 5 35 35 H 1.48500 * 109.99785 * 179.97438 * 8 6 5 36 36 H 1.48495 * 110.00333 * 301.32338 * 8 6 5 37 37 H 1.09005 * 109.47002 * 60.00044 * 11 10 9 38 38 H 1.09002 * 109.46834 * 300.00411 * 11 10 9 39 39 H 0.96999 * 120.00044 * 0.02562 * 14 12 11 40 40 H 1.09000 * 113.61420 * 203.66386 * 17 15 14 41 41 H 1.08994 * 113.61421 * 334.57218 * 17 15 14 42 42 H 1.08998 * 109.47494 * 294.99511 * 20 18 17 43 43 H 1.08999 * 109.47276 * 54.99803 * 20 18 17 44 44 H 1.07995 * 126.12615 * 359.97438 * 22 21 20 45 45 H 1.08000 * 126.04378 * 180.16083 * 23 22 21 46 46 H 1.08001 * 125.89870 * 179.72119 * 24 23 22 47 47 H 1.09008 * 113.61277 * 25.42740 * 26 15 14 48 48 H 1.08992 * 113.61683 * 156.33587 * 26 15 14 49 49 H 1.07995 * 119.99936 * 180.25098 * 27 9 5 50 50 H 1.07993 * 120.00264 * 180.02562 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 3.4312 1.2843 0.0005 5 6 4.0584 2.5153 -0.0047 6 6 5.5632 2.5942 -0.0105 7 8 6.0258 2.9641 1.2900 8 14 6.2705 0.9335 -0.4718 9 6 3.3030 3.6782 0.0010 10 8 3.9203 4.8898 0.0016 11 6 3.0803 6.0460 0.0017 12 6 3.9345 7.2874 0.0017 13 8 5.1435 7.1918 -0.0032 14 7 3.3548 8.5043 0.0023 15 6 4.1851 9.7112 0.0029 16 1 5.1730 9.5455 -0.4269 17 6 3.4695 10.9515 -0.5577 18 6 2.9826 11.2214 0.8758 19 1 2.0353 10.7374 1.1135 20 6 3.0073 12.7014 1.2630 21 7 2.4173 12.8679 2.5936 22 6 3.0052 13.4599 3.6543 23 6 2.1332 13.4138 4.6880 24 6 0.9764 12.7631 4.2466 25 7 1.1456 12.4354 2.9912 26 6 4.2170 10.4364 1.3587 27 6 1.9177 3.6056 0.0006 28 6 1.2907 2.3750 0.0001 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 4.0194 0.3786 0.0005 33 1 5.8852 3.3407 -0.7365 34 1 5.7752 2.3434 1.9879 35 1 7.7540 0.9983 -0.4816 36 1 5.8130 -0.0991 0.4923 37 1 2.4507 6.0376 0.8915 38 1 2.4514 6.0381 -0.8885 39 1 2.3878 8.5808 0.0030 40 1 4.1499 11.7133 -0.9384 41 1 2.6657 10.7142 -1.2545 42 1 4.0377 13.0565 1.2755 43 1 2.4335 13.2767 0.5365 44 1 3.9936 13.8946 3.6740 45 1 2.3022 13.8060 5.6800 46 1 0.0957 12.5650 4.8396 47 1 4.0161 9.7833 2.2080 48 1 5.1012 11.0576 1.5009 49 1 1.3295 4.5113 0.0010 50 1 0.2123 2.3184 -0.0007 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_4974302.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:37:25 Heat of formation + Delta-G solvation = 8.398866 kcal Electronic energy + Delta-G solvation = -33164.145524 eV Core-core repulsion = 28548.347430 eV Total energy + Delta-G solvation = -4615.798094 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.172 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.09229 -41.82313 -41.23808 -40.13764 -39.33446 -38.26476 -36.98690 -35.14896 -33.54993 -32.84340 -31.13905 -30.94612 -29.63707 -28.29987 -27.90190 -26.76368 -26.65908 -24.48372 -23.60779 -22.46423 -22.09787 -21.85543 -21.61211 -20.22500 -19.67901 -18.79063 -18.59747 -18.15174 -17.77247 -17.56181 -17.28862 -17.03685 -16.64888 -16.42340 -16.12089 -16.07882 -15.93148 -15.56114 -15.41531 -15.30289 -15.15084 -14.73085 -14.56079 -14.36322 -14.26858 -14.03358 -13.87515 -13.61028 -13.50947 -13.47735 -13.46198 -13.03284 -12.79895 -12.52152 -12.45276 -12.25054 -11.89863 -11.76627 -11.69514 -11.58411 -11.44682 -11.34942 -11.07302 -10.58222 -10.33758 -10.20497 -10.14835 -9.47443 -8.81622 -4.96887 0.04323 0.34449 1.00016 1.25379 1.36938 1.44019 1.54630 1.66984 1.89815 1.94940 2.33297 2.52835 2.57159 3.36844 3.39705 3.44175 3.48680 3.52711 3.65014 3.72876 3.76195 3.90804 3.96558 4.04042 4.08230 4.08232 4.11576 4.20801 4.23514 4.39744 4.41699 4.42584 4.46725 4.51038 4.62992 4.67279 4.68637 4.72732 4.77587 4.78733 4.90488 4.94469 4.97403 5.03152 5.12603 5.13598 5.16056 5.20509 5.41090 5.50001 5.75492 6.15506 6.18009 6.36416 6.44622 6.49759 6.77730 7.05907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.089 3.911 4 C -0.125 4.125 5 C -0.117 4.117 6 C -0.077 4.077 7 O -0.545 6.545 8 Si 0.776 3.224 9 C 0.100 3.900 10 O -0.309 6.309 11 C 0.036 3.964 12 C 0.515 3.485 13 O -0.567 6.567 14 N -0.696 5.696 15 C 0.113 3.887 16 H 0.087 0.913 17 C -0.116 4.116 18 C -0.112 4.112 19 H 0.091 0.909 20 C 0.135 3.865 21 N -0.374 5.374 22 C 0.051 3.949 23 C -0.295 4.295 24 C 0.029 3.971 25 N -0.333 5.333 26 C -0.146 4.146 27 C -0.164 4.164 28 C -0.158 4.158 29 H 0.114 0.886 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.147 0.853 33 H 0.106 0.894 34 H 0.382 0.618 35 H -0.300 1.300 36 H -0.272 1.272 37 H 0.117 0.883 38 H 0.127 0.873 39 H 0.418 0.582 40 H 0.120 0.880 41 H 0.091 0.909 42 H 0.123 0.877 43 H 0.094 0.906 44 H 0.202 0.798 45 H 0.158 0.842 46 H 0.196 0.804 47 H 0.047 0.953 48 H 0.103 0.897 49 H 0.163 0.837 50 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.154 2.811 -2.853 8.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.043 3.957 4 C -0.143 4.143 5 C -0.118 4.118 6 C -0.185 4.185 7 O -0.352 6.352 8 Si 0.680 3.320 9 C 0.055 3.945 10 O -0.222 6.222 11 C -0.041 4.041 12 C 0.301 3.699 13 O -0.445 6.445 14 N -0.349 5.349 15 C 0.008 3.992 16 H 0.105 0.895 17 C -0.154 4.154 18 C -0.131 4.131 19 H 0.109 0.891 20 C 0.015 3.985 21 N -0.156 5.156 22 C -0.096 4.096 23 C -0.324 4.324 24 C -0.156 4.156 25 N -0.155 5.155 26 C -0.184 4.184 27 C -0.183 4.183 28 C -0.176 4.176 29 H 0.132 0.868 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.164 0.836 33 H 0.124 0.876 34 H 0.231 0.769 35 H -0.228 1.228 36 H -0.199 1.199 37 H 0.134 0.866 38 H 0.145 0.855 39 H 0.256 0.744 40 H 0.138 0.862 41 H 0.110 0.890 42 H 0.141 0.859 43 H 0.112 0.888 44 H 0.219 0.781 45 H 0.176 0.824 46 H 0.213 0.787 47 H 0.066 0.934 48 H 0.121 0.879 49 H 0.180 0.820 50 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.734 1.872 -4.124 7.307 hybrid contribution -0.488 0.806 2.304 2.489 sum -6.222 2.678 -1.821 7.014 Atomic orbital electron populations 1.23348 0.76399 1.05561 1.02382 1.86083 1.23391 1.26437 1.89022 1.18949 0.91994 0.85193 0.99514 1.20285 0.92553 0.97070 1.04401 1.19371 0.96113 0.90506 1.05829 1.25146 0.91919 1.13674 0.87798 1.86656 1.78562 1.52669 1.17328 0.93984 0.76580 0.72352 0.89079 1.18845 0.91502 0.84524 0.99638 1.86205 1.35071 1.11850 1.89072 1.22684 0.92647 0.82320 1.06498 1.20538 0.88358 0.85430 0.75555 1.90772 1.16683 1.87277 1.49736 1.45391 1.11017 1.03891 1.74646 1.21868 0.95629 0.84107 0.97630 0.89509 1.23288 1.00971 0.95941 0.95247 1.22867 0.98704 0.94249 0.97329 0.89091 1.22072 0.99880 0.97306 0.79288 1.48968 1.11453 1.44210 1.10987 1.23144 1.00747 0.98329 0.87352 1.21857 0.95608 1.12879 1.02057 1.24306 1.00473 0.98163 0.92702 1.77227 0.99047 1.23926 1.15299 1.23577 0.99008 0.99026 0.96826 1.21369 0.92158 0.99972 1.04784 1.21392 1.01527 0.90883 1.03805 0.86803 0.91704 0.91256 0.83602 0.87575 0.76942 1.22803 1.19854 0.86583 0.85516 0.74438 0.86207 0.88998 0.85889 0.88764 0.78109 0.82430 0.78724 0.93381 0.87877 0.81953 0.82257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.09 9.81 113.37 1.11 1.02 16 2 O -0.33 -0.84 10.50 -93.37 -0.98 -1.82 16 3 C 0.09 0.25 6.69 22.49 0.15 0.40 16 4 C -0.12 -0.50 8.59 22.36 0.19 -0.30 16 5 C -0.12 -0.67 5.27 -19.78 -0.10 -0.78 16 6 C -0.08 -0.56 2.37 71.23 0.17 -0.39 16 7 O -0.54 -5.96 12.88 -148.98 -1.92 -7.88 16 8 Si 0.78 2.42 30.26 68.60 2.08 4.49 16 9 C 0.10 0.51 6.66 22.49 0.15 0.66 16 10 O -0.31 -2.50 9.00 -74.27 -0.67 -3.16 16 11 C 0.04 -0.03 5.22 71.23 0.37 0.34 16 12 C 0.51 2.46 7.91 87.65 0.69 3.15 16 13 O -0.57 -9.37 16.12 16.02 0.26 -9.11 16 14 N -0.70 1.69 5.26 -440.04 -2.32 -0.62 16 15 C 0.11 -0.23 4.30 45.52 0.20 -0.03 16 16 H 0.09 0.23 7.50 -2.39 -0.02 0.22 16 17 C -0.12 0.98 7.38 31.12 0.23 1.21 16 18 C -0.11 0.61 3.76 -10.17 -0.04 0.57 16 19 H 0.09 -0.19 7.96 -2.39 -0.02 -0.21 16 20 C 0.13 -0.76 6.35 86.38 0.55 -0.21 16 21 N -0.37 -0.43 3.68 -348.06 -1.28 -1.71 16 22 C 0.05 -0.03 11.45 83.54 0.96 0.93 16 23 C -0.29 -0.50 10.80 21.99 0.24 -0.27 16 24 C 0.03 0.11 12.03 85.24 1.03 1.14 16 25 N -0.33 -2.06 12.27 -57.02 -0.70 -2.76 16 26 C -0.15 0.32 7.45 31.21 0.23 0.56 16 27 C -0.16 0.16 9.03 22.35 0.20 0.36 16 28 C -0.16 0.19 9.03 22.35 0.20 0.39 16 29 H 0.11 -0.91 8.14 -2.38 -0.02 -0.93 16 30 H 0.06 -0.47 7.66 -2.39 -0.02 -0.49 16 31 H 0.07 -0.55 7.66 -2.39 -0.02 -0.57 16 32 H 0.15 0.36 4.86 -2.91 -0.01 0.34 16 33 H 0.11 1.01 7.82 -2.39 -0.02 0.99 16 34 H 0.38 1.48 8.70 -74.06 -0.64 0.83 16 35 H -0.30 -3.09 7.11 99.48 0.71 -2.38 16 36 H -0.27 -1.40 6.67 99.48 0.66 -0.74 16 37 H 0.12 -0.72 7.66 -2.38 -0.02 -0.74 16 38 H 0.13 -1.03 7.66 -2.39 -0.02 -1.05 16 39 H 0.42 -3.72 8.70 -92.71 -0.81 -4.52 16 40 H 0.12 -1.38 8.10 -2.39 -0.02 -1.40 16 41 H 0.09 -0.91 8.14 -2.39 -0.02 -0.92 16 42 H 0.12 -1.32 7.78 -2.39 -0.02 -1.34 16 43 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 44 H 0.20 -1.57 8.06 -2.91 -0.02 -1.59 16 45 H 0.16 -0.28 8.06 -2.91 -0.02 -0.30 16 46 H 0.20 -0.22 8.06 -2.91 -0.02 -0.25 16 47 H 0.05 0.15 8.14 -2.38 -0.02 0.13 16 48 H 0.10 -0.44 7.90 -2.39 -0.02 -0.46 16 49 H 0.16 -1.28 6.29 -2.91 -0.02 -1.30 16 50 H 0.16 -1.09 6.29 -2.91 -0.02 -1.11 16 Total: 0.00 -32.81 417.12 0.53 -32.28 By element: Atomic # 1 Polarization: -17.97 SS G_CDS: -0.46 Total: -18.44 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 6.53 Total: 8.73 kcal Atomic # 7 Polarization: -0.80 SS G_CDS: -4.30 Total: -5.10 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -3.31 Total: -21.97 kcal Atomic # 14 Polarization: 2.42 SS G_CDS: 2.08 Total: 4.49 kcal Total: -32.81 0.53 -32.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_4974302.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.682 kcal (2) G-P(sol) polarization free energy of solvation -32.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds