Wall clock time and date at job start Sun Mar 7 2021 04:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35987 * 116.99845 * 2 1 4 4 C 1.39157 * 120.07215 * 180.02562 * 3 2 1 5 5 O 1.35997 * 120.07218 * 359.97438 * 4 3 2 6 6 C 1.42900 * 116.99937 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47002 * 179.97438 * 6 5 4 8 8 O 1.21284 * 120.00100 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99945 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99983 * 180.02562 * 9 7 6 11 11 H 1.08999 * 112.85029 * 336.19453 * 10 9 7 12 12 C 1.53786 * 113.61344 * 107.49657 * 10 9 7 13 13 C 1.53786 * 87.07808 * 89.11766 * 12 10 9 14 14 H 1.08997 * 113.68844 * 270.87069 * 13 12 10 15 15 C 1.52994 * 113.61243 * 139.97913 * 13 12 10 16 16 N 1.46499 * 109.47350 * 87.50324 * 15 13 12 17 17 C 1.34947 * 126.04291 * 124.71342 * 16 15 13 18 18 C 1.35317 * 107.74830 * 179.84045 * 17 16 15 19 19 C 1.39867 * 107.91896 * 0.42718 * 18 17 16 20 20 N 1.30833 * 108.20234 * 359.73209 * 19 18 17 21 21 C 1.53777 * 113.61376 * 204.99722 * 10 9 7 22 22 C 1.38558 * 119.85607 * 179.97438 * 4 3 2 23 23 C 1.38250 * 120.00006 * 359.73238 * 22 4 3 24 24 C 1.38252 * 120.14127 * 0.54306 * 23 22 4 25 25 C 1.50705 * 119.92621 * 179.73018 * 24 23 22 26 26 O 1.42894 * 109.47171 * 119.72540 * 25 24 23 27 27 Si 1.86298 * 109.46780 * 359.71981 * 25 24 23 28 28 C 1.38245 * 120.14917 * 359.44836 * 24 23 22 29 29 H 1.08997 * 109.46671 * 60.00837 * 1 2 3 30 30 H 1.09007 * 109.46880 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47391 * 300.00357 * 1 2 3 32 32 H 1.08994 * 109.47455 * 300.00230 * 6 5 4 33 33 H 1.08999 * 109.46662 * 60.00257 * 6 5 4 34 34 H 0.97000 * 120.00050 * 359.97438 * 9 7 6 35 35 H 1.09001 * 113.60899 * 203.66132 * 12 10 9 36 36 H 1.08992 * 113.61616 * 334.56780 * 12 10 9 37 37 H 1.09004 * 109.47129 * 207.49783 * 15 13 12 38 38 H 1.08996 * 109.47537 * 327.49775 * 15 13 12 39 39 H 1.08002 * 126.12291 * 359.97438 * 17 16 15 40 40 H 1.08005 * 126.03746 * 180.15539 * 18 17 16 41 41 H 1.07998 * 125.89777 * 179.72399 * 19 18 17 42 42 H 1.08996 * 113.61673 * 25.42733 * 21 10 9 43 43 H 1.08997 * 113.61597 * 156.25402 * 21 10 9 44 44 H 1.07997 * 120.00240 * 179.97438 * 22 4 3 45 45 H 1.07993 * 119.93049 * 180.28735 * 23 22 4 46 46 H 1.09004 * 109.46779 * 239.72863 * 25 24 23 47 47 H 0.96709 * 113.99337 * 180.02562 * 26 25 24 48 48 H 1.48506 * 109.99834 * 60.00830 * 27 25 24 49 49 H 1.48502 * 110.00011 * 181.32094 * 27 25 24 50 50 H 1.07995 * 120.00214 * 180.24904 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4360 1.2863 -0.0005 5 8 4.1796 0.1476 -0.0005 6 6 5.6003 0.3006 -0.0017 7 6 6.2519 -1.0583 -0.0009 8 8 5.5670 -2.0592 0.0001 9 7 7.5957 -1.1613 -0.0012 10 6 8.2291 -2.4823 -0.0010 11 1 7.5836 -3.2612 0.4049 12 6 8.8771 -2.8550 -1.3449 13 6 10.1580 -2.1819 -0.8243 14 1 10.2155 -1.1169 -1.0491 15 6 11.4383 -2.9360 -1.1890 16 7 11.9084 -2.4928 -2.5038 17 6 13.1337 -2.0022 -2.7850 18 6 13.1694 -1.7143 -4.1067 19 6 11.9201 -2.0309 -4.6500 20 7 11.1634 -2.4976 -3.6901 21 6 9.6471 -2.4854 0.5941 22 6 4.0603 2.5232 -0.0011 23 6 3.3030 3.6798 -0.0067 24 6 1.9225 3.6057 -0.0004 25 6 1.1016 4.8696 -0.0004 26 8 0.2768 4.9019 -1.1668 27 14 2.2366 6.3470 -0.0010 28 6 1.2932 2.3747 0.0000 29 1 -0.3632 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 5.9059 0.8500 -0.8921 33 1 5.9072 0.8508 0.8878 34 1 8.1435 -0.3607 -0.0023 35 1 8.9794 -3.9295 -1.4972 36 1 8.4328 -2.3457 -2.2000 37 1 12.2052 -2.7327 -0.4415 38 1 11.2339 -4.0062 -1.2180 39 1 13.9419 -1.8660 -2.0816 40 1 14.0122 -1.3074 -4.6459 41 1 11.6300 -1.9106 -5.6833 42 1 9.8244 -1.6778 1.3042 43 1 9.9594 -3.4585 0.9731 44 1 5.1386 2.5839 -0.0011 45 1 3.7908 4.6433 -0.0118 46 1 0.4732 4.8946 0.8899 47 1 -0.2799 5.6899 -1.2330 48 1 3.0988 6.3245 -1.2099 49 1 1.4396 7.5996 0.0312 50 1 0.2147 2.3196 0.0008 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_60476.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:37:38 Heat of formation + Delta-G solvation = 8.234529 kcal Electronic energy + Delta-G solvation = -32883.798235 eV Core-core repulsion = 28267.993015 eV Total energy + Delta-G solvation = -4615.805220 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.172 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.06616 -41.83554 -41.22719 -39.90794 -39.07848 -38.75901 -37.14527 -35.13042 -33.54870 -32.15436 -31.48732 -30.95219 -29.79884 -28.54681 -28.18338 -26.70452 -26.17814 -24.38218 -23.54235 -22.53539 -21.91139 -21.85478 -21.56577 -20.36228 -19.74632 -18.68900 -18.43614 -18.23243 -18.06267 -17.58752 -17.49370 -16.96586 -16.66041 -16.38332 -16.14267 -15.95336 -15.81306 -15.68871 -15.50804 -15.34969 -14.90562 -14.79512 -14.51080 -14.33509 -14.07068 -14.03463 -13.72675 -13.61168 -13.53538 -13.45850 -13.39604 -12.82765 -12.80249 -12.57920 -12.25949 -12.20254 -12.18317 -11.96884 -11.72361 -11.67042 -11.56565 -11.23020 -11.05887 -10.51694 -10.32140 -10.17481 -9.79307 -9.46376 -8.93278 -4.90631 0.14736 0.25361 1.03728 1.31163 1.38778 1.43855 1.63318 1.70496 1.97441 1.97569 2.28861 2.50006 2.53857 3.34499 3.35396 3.47205 3.48887 3.68351 3.69243 3.77745 3.87146 3.87436 4.01772 4.03056 4.08422 4.11312 4.15592 4.24722 4.25293 4.29056 4.32910 4.37422 4.46677 4.48296 4.61157 4.63964 4.67643 4.75065 4.80518 4.83632 4.94103 4.97472 5.02183 5.05668 5.08789 5.13730 5.18263 5.36820 5.51373 5.56958 5.77454 5.94055 6.22388 6.36487 6.50804 6.58322 6.81931 7.09298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.334 6.334 3 C 0.077 3.923 4 C 0.083 3.917 5 O -0.313 6.313 6 C 0.035 3.965 7 C 0.514 3.486 8 O -0.572 6.572 9 N -0.692 5.692 10 C 0.110 3.890 11 H 0.082 0.918 12 C -0.139 4.139 13 C -0.108 4.108 14 H 0.094 0.906 15 C 0.133 3.867 16 N -0.375 5.375 17 C 0.054 3.946 18 C -0.293 4.293 19 C 0.024 3.976 20 N -0.332 5.332 21 C -0.113 4.113 22 C -0.159 4.159 23 C -0.112 4.112 24 C -0.081 4.081 25 C -0.088 4.088 26 O -0.560 6.560 27 Si 0.774 3.226 28 C -0.152 4.152 29 H 0.060 0.940 30 H 0.112 0.888 31 H 0.068 0.932 32 H 0.122 0.878 33 H 0.134 0.866 34 H 0.420 0.580 35 H 0.086 0.914 36 H 0.048 0.952 37 H 0.132 0.868 38 H 0.086 0.914 39 H 0.208 0.792 40 H 0.159 0.841 41 H 0.191 0.809 42 H 0.100 0.900 43 H 0.116 0.884 44 H 0.177 0.823 45 H 0.157 0.843 46 H 0.095 0.905 47 H 0.395 0.605 48 H -0.294 1.294 49 H -0.288 1.288 50 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.217 6.566 6.216 11.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.249 6.249 3 C 0.032 3.968 4 C 0.038 3.962 5 O -0.227 6.227 6 C -0.043 4.043 7 C 0.301 3.699 8 O -0.450 6.450 9 N -0.346 5.346 10 C 0.004 3.996 11 H 0.100 0.900 12 C -0.178 4.178 13 C -0.127 4.127 14 H 0.112 0.888 15 C 0.013 3.987 16 N -0.158 5.158 17 C -0.093 4.093 18 C -0.323 4.323 19 C -0.161 4.161 20 N -0.154 5.154 21 C -0.151 4.151 22 C -0.177 4.177 23 C -0.129 4.129 24 C -0.082 4.082 25 C -0.196 4.196 26 O -0.370 6.370 27 Si 0.678 3.322 28 C -0.171 4.171 29 H 0.078 0.922 30 H 0.130 0.870 31 H 0.087 0.913 32 H 0.139 0.861 33 H 0.151 0.849 34 H 0.258 0.742 35 H 0.105 0.895 36 H 0.066 0.934 37 H 0.150 0.850 38 H 0.104 0.896 39 H 0.224 0.776 40 H 0.177 0.823 41 H 0.208 0.792 42 H 0.118 0.882 43 H 0.134 0.866 44 H 0.194 0.806 45 H 0.175 0.825 46 H 0.113 0.887 47 H 0.245 0.755 48 H -0.221 1.221 49 H -0.216 1.216 50 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.068 5.077 6.163 10.029 hybrid contribution -0.640 0.682 -1.468 1.741 sum 5.429 5.759 4.695 9.202 Atomic orbital electron populations 1.23292 0.76787 1.05248 1.02086 1.86188 1.23054 1.26523 1.89095 1.18644 0.89895 0.85620 1.02677 1.18574 0.88226 0.86496 1.02930 1.86220 1.18134 1.29009 1.89343 1.22762 0.79444 0.95059 1.07003 1.20582 0.82999 0.90876 0.75493 1.90771 1.64078 1.40193 1.49937 1.45327 1.05036 1.09681 1.74540 1.21915 0.94825 0.85110 0.97729 0.89962 1.23387 0.96548 1.01175 0.96659 1.22775 0.92731 1.00078 0.97071 0.88793 1.22078 0.98105 0.99522 0.78949 1.49001 1.09695 1.48969 1.08107 1.23197 0.89864 0.97893 0.98307 1.21851 1.00277 1.15194 0.94953 1.24293 0.93376 0.98630 0.99812 1.77344 1.21129 1.25044 0.91888 1.23273 0.91342 1.05263 0.95257 1.21350 1.02242 0.89248 1.04890 1.20963 0.92320 0.99040 1.00622 1.19285 0.93867 0.93428 1.01575 1.25097 0.99878 1.04065 0.90581 1.86550 1.58521 1.47993 1.43973 0.94102 0.79577 0.72272 0.86199 1.21013 1.00580 0.90525 1.04964 0.92185 0.86989 0.91339 0.86076 0.84897 0.74210 0.89506 0.93351 0.84962 0.89599 0.77577 0.82342 0.79234 0.88195 0.86613 0.80599 0.82549 0.88749 0.75462 1.22138 1.21560 0.83955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.81 113.37 1.11 1.19 16 2 O -0.33 -4.36 10.28 -79.54 -0.82 -5.18 16 3 C 0.08 0.81 6.70 22.57 0.15 0.96 16 4 C 0.08 0.66 6.70 22.57 0.15 0.81 16 5 O -0.31 -3.37 9.45 -67.11 -0.63 -4.00 16 6 C 0.04 -0.01 5.22 71.24 0.37 0.36 16 7 C 0.51 2.93 7.91 87.66 0.69 3.62 16 8 O -0.57 -10.41 16.10 15.99 0.26 -10.15 16 9 N -0.69 1.53 5.26 -440.03 -2.32 -0.79 16 10 C 0.11 -0.10 4.32 45.52 0.20 0.10 16 11 H 0.08 0.39 7.46 -2.39 -0.02 0.37 16 12 C -0.14 -0.10 7.43 31.12 0.23 0.13 16 13 C -0.11 0.62 3.70 -10.27 -0.04 0.58 16 14 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 15 C 0.13 -0.80 6.35 86.38 0.55 -0.25 16 16 N -0.38 -0.32 3.68 -348.07 -1.28 -1.60 16 17 C 0.05 -0.10 11.45 83.54 0.96 0.86 16 18 C -0.29 -0.32 10.80 21.99 0.24 -0.08 16 19 C 0.02 0.11 12.03 85.24 1.02 1.14 16 20 N -0.33 -2.42 12.42 -57.03 -0.71 -3.13 16 21 C -0.11 1.00 7.39 31.12 0.23 1.23 16 22 C -0.16 -0.01 9.04 22.35 0.20 0.19 16 23 C -0.11 0.01 8.66 22.28 0.19 0.20 16 24 C -0.08 -0.26 5.42 -19.86 -0.11 -0.37 16 25 C -0.09 0.06 2.81 71.24 0.20 0.26 16 26 O -0.56 -1.34 12.74 -148.98 -1.90 -3.24 16 27 Si 0.77 -2.67 29.78 68.60 2.04 -0.62 16 28 C -0.15 -0.97 8.60 22.35 0.19 -0.78 16 29 H 0.06 0.15 7.66 -2.39 -0.02 0.13 16 30 H 0.11 0.11 8.14 -2.38 -0.02 0.09 16 31 H 0.07 0.04 7.66 -2.39 -0.02 0.03 16 32 H 0.12 -0.76 7.66 -2.39 -0.02 -0.77 16 33 H 0.13 -1.12 7.66 -2.39 -0.02 -1.14 16 34 H 0.42 -4.14 8.70 -92.71 -0.81 -4.95 16 35 H 0.09 0.15 7.90 -2.39 -0.02 0.13 16 36 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.13 -1.69 8.07 -2.38 -0.02 -1.71 16 38 H 0.09 -0.46 7.84 -2.39 -0.02 -0.48 16 39 H 0.21 -2.08 8.06 -2.91 -0.02 -2.10 16 40 H 0.16 -0.41 8.06 -2.91 -0.02 -0.43 16 41 H 0.19 0.08 8.06 -2.91 -0.02 0.05 16 42 H 0.10 -1.20 8.14 -2.39 -0.02 -1.22 16 43 H 0.12 -1.28 8.10 -2.39 -0.02 -1.29 16 44 H 0.18 -1.49 6.30 -2.91 -0.02 -1.51 16 45 H 0.16 -0.90 4.87 -2.91 -0.01 -0.91 16 46 H 0.09 -0.43 7.96 -2.38 -0.02 -0.45 16 47 H 0.39 -2.30 8.74 -74.05 -0.65 -2.94 16 48 H -0.29 -0.96 7.11 99.48 0.71 -0.25 16 49 H -0.29 -0.28 7.11 99.48 0.71 0.43 16 50 H 0.14 0.60 6.30 -2.91 -0.02 0.58 16 Total: 0.00 -37.86 417.91 0.77 -37.10 By element: Atomic # 1 Polarization: -18.12 SS G_CDS: -0.43 Total: -18.55 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 6.55 Total: 10.16 kcal Atomic # 7 Polarization: -1.21 SS G_CDS: -4.30 Total: -5.51 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -3.09 Total: -22.57 kcal Atomic # 14 Polarization: -2.67 SS G_CDS: 2.04 Total: -0.62 kcal Total: -37.86 0.77 -37.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_60476.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.332 kcal (2) G-P(sol) polarization free energy of solvation -37.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds