Wall clock time and date at job start Sun Mar 7 2021 04:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35960 * 116.99702 * 2 1 4 4 C 1.39443 * 120.12083 * 179.97438 * 3 2 1 5 5 O 1.34782 * 133.24636 * 359.97438 * 4 3 2 6 6 C 1.34929 * 110.84521 * 179.97438 * 5 4 3 7 7 C 1.46995 * 125.13841 * 180.02562 * 6 5 4 8 8 O 1.21649 * 119.99425 * 179.97438 * 7 6 5 9 9 N 1.34774 * 119.99790 * 359.95621 * 7 6 5 10 10 C 1.46508 * 119.99602 * 179.97438 * 9 7 6 11 11 H 1.08997 * 112.84845 * 23.80662 * 10 9 7 12 12 C 1.53775 * 113.61094 * 155.00243 * 10 9 7 13 13 C 1.53777 * 87.08496 * 89.11717 * 12 10 9 14 14 H 1.08998 * 113.61314 * 270.88807 * 13 12 10 15 15 C 1.52995 * 113.62005 * 139.97511 * 13 12 10 16 16 N 1.46498 * 109.47623 * 175.00420 * 15 13 12 17 17 C 1.34943 * 126.04341 * 125.00126 * 16 15 13 18 18 C 1.35311 * 107.75217 * 179.97438 * 17 16 15 19 19 C 1.39871 * 107.91692 * 359.97438 * 18 17 16 20 20 N 1.30837 * 108.20175 * 359.74013 * 19 18 17 21 21 C 1.53772 * 113.61406 * 252.49949 * 10 9 7 22 22 C 1.35809 * 109.72028 * 359.97438 * 6 5 4 23 23 C 1.40605 * 119.13880 * 179.97438 * 4 3 2 24 24 C 1.39783 * 120.12294 * 0.02681 * 23 4 3 25 25 C 1.50690 * 120.09649 * 180.02562 * 24 23 4 26 26 O 1.42897 * 109.47312 * 284.97152 * 25 24 23 27 27 Si 1.86300 * 109.47062 * 164.97187 * 25 24 23 28 28 C 1.36635 * 119.80651 * 359.97438 * 24 23 4 29 29 C 1.38267 * 120.12074 * 0.27649 * 3 2 1 30 30 H 1.08994 * 109.47045 * 299.99589 * 1 2 3 31 31 H 1.09001 * 109.47450 * 59.99633 * 1 2 3 32 32 H 1.09001 * 109.47087 * 179.97438 * 1 2 3 33 33 H 0.97001 * 120.00561 * 0.02562 * 9 7 6 34 34 H 1.09004 * 113.61593 * 203.66665 * 12 10 9 35 35 H 1.09003 * 113.61811 * 334.56839 * 12 10 9 36 36 H 1.08998 * 109.47315 * 295.00700 * 15 13 12 37 37 H 1.09010 * 109.46930 * 55.00349 * 15 13 12 38 38 H 1.08003 * 126.12090 * 359.95888 * 17 16 15 39 39 H 1.07996 * 126.04525 * 180.02562 * 18 17 16 40 40 H 1.07999 * 125.90105 * 179.97438 * 19 18 17 41 41 H 1.09002 * 113.62062 * 25.43412 * 21 10 9 42 42 H 1.08998 * 113.61338 * 156.33666 * 21 10 9 43 43 H 1.07993 * 126.95859 * 180.02562 * 22 6 5 44 44 H 1.08999 * 109.47246 * 44.97360 * 25 24 23 45 45 H 0.96698 * 114.00177 * 300.00048 * 26 25 24 46 46 H 1.48500 * 110.00170 * 58.68156 * 27 25 24 47 47 H 1.48506 * 110.00351 * 179.97438 * 27 25 24 48 48 H 1.08002 * 119.74788 * 179.97438 * 28 24 23 49 49 H 1.07992 * 119.66420 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4386 1.2874 0.0005 5 8 4.4142 0.3574 0.0016 6 6 5.6318 0.9389 0.0011 7 6 6.9132 0.2187 0.0014 8 8 7.9596 0.8392 0.0005 9 7 6.9288 -1.1290 0.0031 10 6 8.2060 -1.8467 0.0028 11 1 9.0255 -1.2524 0.4068 12 6 8.1178 -3.2610 0.6001 13 6 7.7800 -3.7534 -0.8170 14 1 6.7134 -3.7405 -1.0410 15 6 8.4491 -5.0804 -1.1806 16 7 7.9747 -5.5227 -2.4942 17 6 8.7489 -5.8268 -3.5569 18 6 7.9316 -6.1902 -4.5722 19 6 6.6127 -6.1060 -4.1141 20 7 6.6376 -5.7117 -2.8668 21 6 8.5342 -2.5195 -1.3404 22 6 5.4944 2.2900 -0.0008 23 6 4.0553 2.5510 0.0000 24 6 3.2765 3.7118 -0.0005 25 6 3.9380 5.0657 -0.0017 26 8 4.4603 5.3418 1.2994 27 14 2.6863 6.3680 -0.4576 28 6 1.9135 3.6151 -0.0010 29 6 1.2956 2.3726 0.0058 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 6.0944 -1.6237 0.0037 34 1 9.0694 -3.6358 0.9773 35 1 7.3012 -3.3845 1.3114 36 1 9.5303 -4.9458 -1.2112 37 1 8.1974 -5.8314 -0.4316 38 1 9.8276 -5.7869 -3.5909 39 1 8.2426 -6.4928 -5.5611 40 1 5.7269 -6.3315 -4.6893 41 1 8.0537 -2.0445 -2.1957 42 1 9.5995 -2.6916 -1.4937 43 1 6.2873 3.0232 -0.0019 44 1 4.7504 5.0725 -0.7283 45 1 3.7916 5.3516 1.9978 46 1 1.5577 6.3477 0.5073 47 1 3.3261 7.7082 -0.4617 48 1 1.3127 4.5126 -0.0010 49 1 0.2174 2.3120 0.0099 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_6672420.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:37:56 Heat of formation + Delta-G solvation = 50.115035 kcal Electronic energy + Delta-G solvation = -34611.363130 eV Core-core repulsion = 29896.459323 eV Total energy + Delta-G solvation = -4714.903807 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.156 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.82172 -42.08776 -41.38998 -40.64984 -39.54890 -39.15979 -37.14586 -35.26478 -33.71773 -33.56027 -31.96641 -31.12112 -30.92400 -28.84996 -28.35566 -26.79731 -26.38449 -25.53838 -24.05985 -23.95525 -22.24549 -21.96739 -21.84170 -21.62530 -20.24625 -19.94701 -19.11272 -18.61761 -18.16956 -17.90354 -17.83380 -17.31901 -17.03460 -16.68365 -16.45340 -16.22948 -16.18678 -15.91151 -15.80612 -15.50131 -15.33079 -14.79950 -14.64909 -14.60857 -14.54399 -14.28919 -14.24270 -13.90575 -13.58361 -13.53342 -13.48974 -13.45056 -13.29691 -12.84793 -12.50782 -12.29972 -12.29485 -12.15519 -11.75686 -11.68484 -11.68018 -11.58153 -11.38167 -11.07926 -10.63025 -10.41971 -10.30074 -9.88817 -9.47330 -9.05837 -4.89910 -0.73794 0.04985 0.54813 1.00852 1.11441 1.28705 1.58350 1.66928 1.78822 1.80778 1.95440 1.96725 2.09705 2.34682 3.09790 3.33035 3.35164 3.45280 3.50778 3.51491 3.61600 3.70791 3.76519 3.82463 3.92293 3.95007 4.08923 4.12293 4.18619 4.29114 4.38013 4.39026 4.39899 4.46001 4.48905 4.58304 4.67014 4.70074 4.73198 4.74430 4.78630 4.82419 4.90119 4.92413 4.99338 5.00552 5.03274 5.16034 5.17078 5.27958 5.41200 5.54167 5.75331 6.10090 6.19362 6.23246 6.48403 6.71353 6.78397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.335 6.335 3 C 0.136 3.864 4 C 0.020 3.980 5 O -0.183 6.183 6 C -0.037 4.037 7 C 0.605 3.395 8 O -0.542 6.542 9 N -0.690 5.690 10 C 0.108 3.892 11 H 0.104 0.896 12 C -0.118 4.118 13 C -0.118 4.118 14 H 0.081 0.919 15 C 0.137 3.863 16 N -0.374 5.374 17 C 0.053 3.947 18 C -0.294 4.294 19 C 0.028 3.972 20 N -0.337 5.337 21 C -0.140 4.140 22 C -0.109 4.109 23 C -0.096 4.096 24 C -0.099 4.099 25 C -0.090 4.090 26 O -0.547 6.547 27 Si 0.783 3.217 28 C -0.088 4.088 29 C -0.164 4.164 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.114 0.886 33 H 0.414 0.586 34 H 0.129 0.871 35 H 0.082 0.918 36 H 0.130 0.870 37 H 0.092 0.908 38 H 0.206 0.794 39 H 0.160 0.840 40 H 0.194 0.806 41 H 0.048 0.952 42 H 0.115 0.885 43 H 0.173 0.827 44 H 0.115 0.885 45 H 0.386 0.614 46 H -0.261 1.261 47 H -0.304 1.304 48 H 0.167 0.833 49 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.957 -1.901 -0.979 4.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.249 6.249 3 C 0.090 3.910 4 C -0.028 4.028 5 O -0.086 6.086 6 C -0.087 4.087 7 C 0.391 3.609 8 O -0.421 6.421 9 N -0.340 5.340 10 C 0.004 3.996 11 H 0.122 0.878 12 C -0.157 4.157 13 C -0.137 4.137 14 H 0.099 0.901 15 C 0.017 3.983 16 N -0.157 5.157 17 C -0.093 4.093 18 C -0.323 4.323 19 C -0.157 4.157 20 N -0.160 5.160 21 C -0.179 4.179 22 C -0.130 4.130 23 C -0.097 4.097 24 C -0.100 4.100 25 C -0.198 4.198 26 O -0.356 6.356 27 Si 0.686 3.314 28 C -0.105 4.105 29 C -0.183 4.183 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.133 0.867 33 H 0.250 0.750 34 H 0.147 0.853 35 H 0.101 0.899 36 H 0.148 0.852 37 H 0.110 0.890 38 H 0.222 0.778 39 H 0.177 0.823 40 H 0.211 0.789 41 H 0.067 0.933 42 H 0.134 0.866 43 H 0.191 0.809 44 H 0.133 0.867 45 H 0.236 0.764 46 H -0.187 1.187 47 H -0.232 1.232 48 H 0.184 0.816 49 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -3.673 -0.936 0.127 3.792 hybrid contribution 0.155 -0.596 0.282 0.678 sum -3.518 -1.532 0.409 3.859 Atomic orbital electron populations 1.23491 0.75263 1.06004 1.03231 1.86152 1.24384 1.25897 1.88439 1.18006 0.86093 0.86888 0.99978 1.19249 0.88272 0.87147 1.08137 1.84018 1.12790 1.35196 1.76561 1.21936 0.84000 0.92809 1.09947 1.16650 0.85082 0.82661 0.76492 1.90884 1.31295 1.68137 1.51776 1.45585 1.10776 1.04897 1.72693 1.22067 0.85608 0.93603 0.98353 0.87837 1.23330 1.05091 0.91964 0.95287 1.22822 1.00193 0.93155 0.97504 0.90067 1.22057 1.00443 0.95821 0.80006 1.48961 1.03684 1.51216 1.11809 1.23177 0.99732 0.99163 0.87254 1.21858 0.92318 1.15755 1.02395 1.24304 0.99756 0.99090 0.92591 1.77257 0.98380 1.24296 1.16057 1.23533 1.02161 0.95797 0.96387 1.22865 0.95463 0.94300 1.00376 1.19578 0.92275 0.92782 1.05052 1.19568 0.93473 0.93865 1.03078 1.25398 1.07786 0.98590 0.87982 1.86605 1.38961 1.92752 1.17255 0.93863 0.75421 0.73409 0.88745 1.20901 0.92912 0.98828 0.97906 1.21385 1.01832 0.89540 1.05502 0.90694 0.90415 0.86738 0.74957 0.85252 0.89902 0.85223 0.88984 0.77751 0.82261 0.78872 0.93274 0.86646 0.80915 0.86744 0.76421 1.18691 1.23245 0.81597 0.80210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.08 9.81 113.37 1.11 1.03 16 2 O -0.33 -1.29 10.50 -93.11 -0.98 -2.27 16 3 C 0.14 0.57 6.70 22.57 0.15 0.72 16 4 C 0.02 0.17 7.35 23.14 0.17 0.34 16 5 O -0.18 -1.86 10.28 -13.48 -0.14 -2.00 16 6 C -0.04 -0.36 7.07 24.00 0.17 -0.19 16 7 C 0.61 5.85 7.80 86.54 0.67 6.52 16 8 O -0.54 -8.16 16.42 -4.19 -0.07 -8.23 16 9 N -0.69 -2.62 5.26 -443.73 -2.33 -4.96 16 10 C 0.11 -0.01 4.32 45.51 0.20 0.19 16 11 H 0.10 0.20 7.46 -2.39 -0.02 0.18 16 12 C -0.12 0.69 7.39 31.12 0.23 0.92 16 13 C -0.12 0.32 3.74 -10.27 -0.04 0.28 16 14 H 0.08 0.22 7.97 -2.39 -0.02 0.20 16 15 C 0.14 -0.58 6.34 86.38 0.55 -0.03 16 16 N -0.37 -0.97 3.68 -348.07 -1.28 -2.25 16 17 C 0.05 0.01 11.45 83.54 0.96 0.96 16 18 C -0.29 -0.75 10.80 21.99 0.24 -0.51 16 19 C 0.03 0.15 12.03 85.24 1.03 1.18 16 20 N -0.34 -2.87 12.28 -57.02 -0.70 -3.57 16 21 C -0.14 0.19 7.43 31.12 0.23 0.42 16 22 C -0.11 -1.00 10.68 23.79 0.25 -0.75 16 23 C -0.10 -0.69 6.16 -20.24 -0.12 -0.81 16 24 C -0.10 -0.18 5.26 -19.87 -0.10 -0.29 16 25 C -0.09 -0.05 2.70 71.23 0.19 0.14 16 26 O -0.55 -2.15 12.88 -148.98 -1.92 -4.07 16 27 Si 0.78 -2.82 30.25 68.60 2.08 -0.74 16 28 C -0.09 0.24 8.62 22.02 0.19 0.43 16 29 C -0.16 0.40 9.03 22.40 0.20 0.60 16 30 H 0.07 -0.67 7.65 -2.39 -0.02 -0.69 16 31 H 0.08 -0.71 7.67 -2.39 -0.02 -0.73 16 32 H 0.11 -0.92 8.14 -2.39 -0.02 -0.94 16 33 H 0.41 0.78 8.42 -92.71 -0.78 0.00 16 34 H 0.13 -1.37 8.10 -2.38 -0.02 -1.39 16 35 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 36 H 0.13 -1.38 7.77 -2.39 -0.02 -1.40 16 37 H 0.09 -0.46 8.14 -2.38 -0.02 -0.48 16 38 H 0.21 -1.61 8.06 -2.91 -0.02 -1.63 16 39 H 0.16 -0.20 8.06 -2.91 -0.02 -0.22 16 40 H 0.19 0.14 8.06 -2.91 -0.02 0.11 16 41 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 42 H 0.12 -0.62 7.90 -2.39 -0.02 -0.64 16 43 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 44 H 0.11 0.09 7.96 -2.39 -0.02 0.07 16 45 H 0.39 -1.00 8.70 -74.06 -0.64 -1.64 16 46 H -0.26 0.76 6.69 99.48 0.67 1.43 16 47 H -0.30 -1.46 7.11 99.48 0.71 -0.75 16 48 H 0.17 -1.35 4.81 -2.91 -0.01 -1.37 16 49 H 0.18 -1.72 6.26 -2.91 -0.02 -1.73 16 Total: 0.00 -27.97 415.51 0.53 -27.45 By element: Atomic # 1 Polarization: -10.08 SS G_CDS: -0.40 Total: -10.49 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 6.27 Total: 11.13 kcal Atomic # 7 Polarization: -6.46 SS G_CDS: -4.31 Total: -10.78 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -3.10 Total: -16.57 kcal Atomic # 14 Polarization: -2.82 SS G_CDS: 2.08 Total: -0.74 kcal Total: -27.97 0.53 -27.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_6672420.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.563 kcal (2) G-P(sol) polarization free energy of solvation -27.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds