Wall clock time and date at job start Sun Mar 7 2021 04:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33820 * 122.44577 * 2 1 4 4 C 1.50694 * 124.52207 * 0.02562 * 3 2 1 5 5 O 1.42896 * 109.47383 * 30.00101 * 4 3 2 6 6 Si 1.86302 * 109.47236 * 150.00098 * 4 3 2 7 7 S 1.70617 * 110.95113 * 179.70409 * 3 2 1 8 8 C 1.75823 * 91.56441 * 0.35444 * 7 3 2 9 9 C 1.46586 * 125.45833 * 179.91045 * 8 7 3 10 10 O 1.21700 * 120.00013 * 179.41624 * 9 8 7 11 11 N 1.34777 * 119.99915 * 359.69930 * 9 8 7 12 12 C 1.46496 * 119.99867 * 180.02562 * 11 9 8 13 13 H 1.08997 * 112.85620 * 23.80053 * 12 11 9 14 14 C 1.53784 * 113.61603 * 154.99941 * 12 11 9 15 15 C 1.53784 * 87.08379 * 89.11232 * 14 12 11 16 16 H 1.09000 * 113.61065 * 270.80460 * 15 14 12 17 17 C 1.52999 * 113.61325 * 139.97982 * 15 14 12 18 18 N 1.46493 * 109.46917 * 175.00079 * 17 15 14 19 19 C 1.34949 * 126.03904 * 124.72164 * 18 17 15 20 20 C 1.35318 * 107.74764 * 179.84209 * 19 18 17 21 21 C 1.39868 * 107.92196 * 0.41590 * 20 19 18 22 22 N 1.30838 * 108.20323 * 359.74398 * 21 20 19 23 23 C 1.53780 * 87.08002 * 25.43506 * 15 14 12 24 24 C 1.36648 * 109.08756 * 359.65000 * 8 7 3 25 25 H 1.09002 * 109.46747 * 269.99531 * 1 2 3 26 26 H 1.08997 * 109.47589 * 29.99736 * 1 2 3 27 27 H 1.08998 * 109.46887 * 150.00036 * 1 2 3 28 28 H 1.09003 * 109.47480 * 270.00057 * 4 3 2 29 29 H 0.96701 * 114.00028 * 179.97438 * 5 4 3 30 30 H 1.48508 * 109.99690 * 300.00106 * 6 4 3 31 31 H 1.48503 * 110.00199 * 61.31461 * 6 4 3 32 32 H 0.96999 * 120.00047 * 359.97438 * 11 9 8 33 33 H 1.08997 * 113.61773 * 203.66290 * 14 12 11 34 34 H 1.09007 * 113.60878 * 334.56245 * 14 12 11 35 35 H 1.08996 * 109.47595 * 295.00535 * 17 15 14 36 36 H 1.09004 * 109.46794 * 55.00894 * 17 15 14 37 37 H 1.07999 * 126.12577 * 359.97438 * 19 18 17 38 38 H 1.07997 * 126.04047 * 180.16462 * 20 19 18 39 39 H 1.07997 * 125.90227 * 179.76227 * 21 20 19 40 40 H 1.08998 * 113.61586 * 220.02055 * 23 15 14 41 41 H 1.09002 * 113.61686 * 89.11237 * 23 15 14 42 42 H 1.07996 * 123.35640 * 180.24314 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 6 1.6354 2.5161 0.0006 5 8 0.3755 2.4979 0.6747 6 14 2.7926 3.6826 0.8786 7 16 3.8969 0.7893 0.0082 8 6 3.5938 -0.9426 0.0008 9 6 4.6232 -1.9861 0.0013 10 8 4.3003 -3.1594 0.0065 11 7 5.9274 -1.6460 0.0017 12 6 6.9562 -2.6889 0.0015 13 1 6.5995 -3.6356 -0.4041 14 6 8.2981 -2.2304 -0.5935 15 6 8.6824 -1.7768 0.8247 16 1 8.3900 -0.7510 1.0492 17 6 10.1385 -2.0731 1.1895 18 7 10.4387 -1.5007 2.5041 19 6 10.9298 -2.1700 3.5681 20 6 11.0685 -1.2861 4.5832 21 6 10.6389 -0.0357 4.1270 22 7 10.2610 -0.1631 2.8808 23 6 7.6904 -2.8301 1.3455 24 6 2.2447 -1.1601 0.0005 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 1.4928 2.8508 -1.0270 29 1 -0.0622 3.3593 0.7135 30 1 2.9952 3.2373 2.2808 31 1 4.0961 3.7348 0.1690 32 1 6.1848 -0.7108 0.0012 33 1 8.9108 -3.0490 -0.9712 34 1 8.2028 -1.4091 -1.3039 35 1 10.2935 -3.1515 1.2187 36 1 10.7974 -1.6313 0.4419 37 1 11.1710 -3.2221 3.6024 38 1 11.4411 -1.5078 5.5724 39 1 10.6221 0.8773 4.7035 40 1 7.1045 -2.4930 2.2005 41 1 8.1369 -3.8128 1.4979 42 1 1.8020 -2.1451 0.0002 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_6739946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:38:00 Heat of formation + Delta-G solvation = 77.037132 kcal Electronic energy + Delta-G solvation = -25554.836919 eV Core-core repulsion = 21824.069453 eV Total energy + Delta-G solvation = -3730.767466 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.12805 -41.46540 -40.16915 -39.33867 -37.38262 -35.25123 -33.64950 -32.27920 -31.02106 -30.26928 -28.74726 -26.86260 -26.65392 -24.72028 -23.95443 -22.23746 -21.98336 -21.67400 -20.43163 -20.04049 -19.38686 -18.43164 -18.17845 -17.42631 -17.23461 -16.59776 -16.35375 -16.30152 -16.02141 -15.59269 -15.34513 -15.02276 -14.79614 -14.60228 -14.48151 -14.44778 -14.32763 -13.93820 -13.62007 -13.54248 -13.32456 -13.14256 -12.95310 -12.85700 -12.60910 -12.32029 -12.30074 -12.01840 -11.76555 -11.62499 -11.47306 -11.40786 -10.70648 -10.41467 -10.32054 -9.82037 -9.53767 -9.50558 -5.22496 -0.84094 0.11620 0.48340 0.97064 0.97909 1.25846 1.51300 1.63350 1.78590 1.87325 1.88332 1.91963 3.25045 3.28910 3.40615 3.44856 3.51846 3.68340 3.69932 3.90846 3.99849 4.05539 4.14188 4.21316 4.34320 4.38119 4.44936 4.49915 4.54952 4.62520 4.66229 4.67246 4.74308 4.86625 4.86935 4.87983 4.90845 4.96618 5.01998 5.12747 5.28517 5.39129 5.41592 5.71925 6.11756 6.15711 6.74601 6.81118 6.85982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.100 4.100 3 C -0.203 4.203 4 C -0.037 4.037 5 O -0.549 6.549 6 Si 0.753 3.247 7 S 0.197 5.803 8 C -0.284 4.284 9 C 0.594 3.406 10 O -0.563 6.563 11 N -0.701 5.701 12 C 0.109 3.891 13 H 0.099 0.901 14 C -0.118 4.118 15 C -0.117 4.117 16 H 0.082 0.918 17 C 0.137 3.863 18 N -0.375 5.375 19 C 0.053 3.947 20 C -0.294 4.294 21 C 0.028 3.972 22 N -0.337 5.337 23 C -0.142 4.142 24 C -0.052 4.052 25 H 0.069 0.931 26 H 0.090 0.910 27 H 0.064 0.936 28 H 0.113 0.887 29 H 0.406 0.594 30 H -0.296 1.296 31 H -0.261 1.261 32 H 0.406 0.594 33 H 0.129 0.871 34 H 0.084 0.916 35 H 0.129 0.871 36 H 0.094 0.906 37 H 0.205 0.795 38 H 0.160 0.840 39 H 0.195 0.805 40 H 0.045 0.955 41 H 0.113 0.887 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.971 4.222 -2.136 4.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.112 4.112 3 C -0.322 4.322 4 C -0.149 4.149 5 O -0.360 6.360 6 Si 0.657 3.343 7 S 0.465 5.535 8 C -0.403 4.403 9 C 0.381 3.619 10 O -0.444 6.444 11 N -0.351 5.351 12 C 0.005 3.995 13 H 0.117 0.883 14 C -0.156 4.156 15 C -0.136 4.136 16 H 0.100 0.900 17 C 0.017 3.983 18 N -0.157 5.157 19 C -0.093 4.093 20 C -0.324 4.324 21 C -0.157 4.157 22 N -0.160 5.160 23 C -0.181 4.181 24 C -0.086 4.086 25 H 0.088 0.912 26 H 0.108 0.892 27 H 0.083 0.917 28 H 0.130 0.870 29 H 0.259 0.741 30 H -0.223 1.223 31 H -0.187 1.187 32 H 0.241 0.759 33 H 0.147 0.853 34 H 0.103 0.897 35 H 0.147 0.853 36 H 0.112 0.888 37 H 0.222 0.778 38 H 0.177 0.823 39 H 0.212 0.788 40 H 0.064 0.936 41 H 0.132 0.868 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.512 4.301 -2.831 5.729 hybrid contribution -0.976 -1.306 0.880 1.853 sum 1.536 2.994 -1.951 3.890 Atomic orbital electron populations 1.20515 0.87196 1.03321 1.02858 1.18912 0.99614 0.90063 1.02620 1.23736 0.97959 1.00357 1.10111 1.24099 0.93442 0.94243 1.03091 1.86526 1.32159 1.38449 1.78870 0.94147 0.77879 0.85457 0.76847 1.82908 1.03381 0.97845 1.69387 1.24598 0.98014 0.97537 1.20197 1.17095 0.82351 0.87043 0.75388 1.90817 1.82213 1.19555 1.51805 1.45521 1.04603 1.10559 1.74462 1.22006 0.87588 0.91796 0.98160 0.88292 1.23335 0.93865 1.03169 0.95244 1.22823 0.93735 0.99538 0.97528 0.89999 1.22057 0.96087 1.00167 0.79997 1.48965 1.49190 1.05889 1.11658 1.23179 0.98392 1.00542 0.87215 1.21866 1.15102 0.92979 1.02419 1.24301 0.98337 1.00375 0.92650 1.77245 1.25653 0.97049 1.16034 1.23540 0.97491 1.00580 0.96470 1.20911 0.91120 1.00611 0.95929 0.91204 0.89179 0.91670 0.86996 0.74128 1.22298 1.18663 0.75855 0.85298 0.89688 0.85310 0.88778 0.77788 0.82261 0.78835 0.93569 0.86830 0.82822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.18 8.70 71.24 0.62 0.44 16 2 C -0.10 -0.59 5.75 -21.05 -0.12 -0.71 16 3 C -0.20 -0.83 5.57 24.68 0.14 -0.70 16 4 C -0.04 0.10 2.75 71.23 0.20 0.30 16 5 O -0.55 2.22 9.81 -148.98 -1.46 0.76 16 6 Si 0.75 -2.45 31.30 68.60 2.15 -0.31 16 7 S 0.20 0.86 19.78 -56.49 -1.12 -0.26 16 8 C -0.28 -2.45 6.45 24.08 0.16 -2.29 16 9 C 0.59 6.28 7.78 86.42 0.67 6.95 16 10 O -0.56 -9.78 16.44 -4.35 -0.07 -9.85 16 11 N -0.70 -3.01 5.26 -444.08 -2.33 -5.35 16 12 C 0.11 0.10 4.32 45.52 0.20 0.30 16 13 H 0.10 0.36 7.47 -2.39 -0.02 0.34 16 14 C -0.12 0.66 7.39 31.12 0.23 0.89 16 15 C -0.12 0.29 3.74 -10.27 -0.04 0.25 16 16 H 0.08 0.20 7.96 -2.39 -0.02 0.18 16 17 C 0.14 -0.57 6.35 86.38 0.55 -0.02 16 18 N -0.37 -1.00 3.68 -348.08 -1.28 -2.29 16 19 C 0.05 0.02 11.45 83.54 0.96 0.97 16 20 C -0.29 -0.80 10.80 21.99 0.24 -0.57 16 21 C 0.03 0.16 12.03 85.24 1.02 1.18 16 22 N -0.34 -2.82 12.27 -57.03 -0.70 -3.52 16 23 C -0.14 0.04 7.43 31.12 0.23 0.27 16 24 C -0.05 -0.44 9.80 21.72 0.21 -0.23 16 25 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 26 H 0.09 0.03 6.42 -2.39 -0.02 0.02 16 27 H 0.06 0.06 8.13 -2.39 -0.02 0.05 16 28 H 0.11 -0.85 7.96 -2.39 -0.02 -0.87 16 29 H 0.41 -5.90 8.74 -74.06 -0.65 -6.55 16 30 H -0.30 -1.77 7.11 99.48 0.71 -1.06 16 31 H -0.26 -0.12 7.11 99.48 0.71 0.59 16 32 H 0.41 0.48 7.81 -92.71 -0.72 -0.24 16 33 H 0.13 -1.33 8.10 -2.39 -0.02 -1.35 16 34 H 0.08 -0.49 8.14 -2.38 -0.02 -0.51 16 35 H 0.13 -1.32 7.77 -2.39 -0.02 -1.34 16 36 H 0.09 -0.49 8.14 -2.38 -0.02 -0.51 16 37 H 0.21 -1.54 8.06 -2.91 -0.02 -1.56 16 38 H 0.16 -0.16 8.06 -2.91 -0.02 -0.19 16 39 H 0.19 0.13 8.06 -2.91 -0.02 0.10 16 40 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 41 H 0.11 -0.47 7.90 -2.39 -0.02 -0.49 16 42 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 Total: 0.00 -25.67 366.12 0.16 -25.51 By element: Atomic # 1 Polarization: -11.46 SS G_CDS: -0.28 Total: -11.74 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: 5.26 Total: 7.05 kcal Atomic # 7 Polarization: -6.84 SS G_CDS: -4.32 Total: -11.16 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: -1.53 Total: -9.09 kcal Atomic # 14 Polarization: -2.45 SS G_CDS: 2.15 Total: -0.31 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -1.12 Total: -0.26 kcal Total: -25.67 0.16 -25.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_6739946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.542 kcal (2) G-P(sol) polarization free energy of solvation -25.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds