Wall clock time and date at job start Sun Mar 7 2021 04:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86297 * 109.46986 * 2 1 4 4 C 1.50699 * 109.47251 * 120.00041 * 2 1 3 5 5 C 1.32769 * 124.71084 * 64.99767 * 4 2 1 6 6 C 1.44433 * 113.08142 * 180.02562 * 5 4 2 7 7 C 1.47185 * 123.45978 * 179.97438 * 6 5 4 8 8 O 1.21643 * 119.99998 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00084 * 180.27366 * 7 6 5 10 10 C 1.46500 * 120.00431 * 179.72617 * 9 7 6 11 11 H 1.09006 * 112.84642 * 336.19847 * 10 9 7 12 12 C 1.53774 * 113.61696 * 107.50253 * 10 9 7 13 13 C 1.53777 * 87.08072 * 89.12070 * 12 10 9 14 14 H 1.09005 * 113.69416 * 270.87294 * 13 12 10 15 15 C 1.53000 * 113.61574 * 139.98143 * 13 12 10 16 16 N 1.46509 * 109.47135 * 87.50177 * 15 13 12 17 17 C 1.34946 * 126.03467 * 124.99269 * 16 15 13 18 18 C 1.35323 * 107.74525 * 179.97438 * 17 16 15 19 19 C 1.39874 * 107.91685 * 0.02562 * 18 17 16 20 20 N 1.30833 * 108.20316 * 359.73837 * 19 18 17 21 21 C 1.53780 * 113.61736 * 205.00698 * 10 9 7 22 22 C 1.36009 * 113.08003 * 0.24895 * 6 5 4 23 23 S 1.70448 * 110.81395 * 359.62275 * 22 6 5 24 24 H 0.96693 * 113.99966 * 300.00317 * 1 2 3 25 25 H 1.08997 * 109.47199 * 240.00151 * 2 1 3 26 26 H 1.48509 * 109.99959 * 178.68093 * 3 2 1 27 27 H 1.48501 * 110.00429 * 299.99574 * 3 2 1 28 28 H 1.07994 * 123.46077 * 0.02562 * 5 4 2 29 29 H 0.97000 * 120.00112 * 359.73054 * 9 7 6 30 30 H 1.09001 * 113.61556 * 203.66763 * 12 10 9 31 31 H 1.09000 * 113.61618 * 334.56933 * 12 10 9 32 32 H 1.08997 * 109.47568 * 207.50010 * 15 13 12 33 33 H 1.08991 * 109.47301 * 327.50673 * 15 13 12 34 34 H 1.07999 * 126.13236 * 359.97120 * 17 16 15 35 35 H 1.07995 * 126.04003 * 180.02562 * 18 17 16 36 36 H 1.08002 * 125.89339 * 179.97438 * 19 18 17 37 37 H 1.09002 * 113.61835 * 25.42623 * 21 10 9 38 38 H 1.09003 * 113.61714 * 156.33419 * 21 10 9 39 39 H 1.07989 * 124.59343 * 179.75451 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.7485 -2.0003 1.4863 6 6 2.3356 -2.4180 2.7381 7 6 2.2684 -3.7981 3.2454 8 8 1.6960 -4.6560 2.6004 9 7 2.8368 -4.1101 4.4269 10 6 2.7648 -5.4824 4.9348 11 1 1.9235 -6.0416 4.5253 12 6 4.1025 -6.2372 4.8619 13 6 4.4042 -5.6782 6.2623 14 1 4.9063 -4.7108 6.2490 15 6 5.0825 -6.6867 7.1918 16 7 6.5344 -6.6213 7.0071 17 6 7.4492 -6.4095 7.9763 18 6 8.6727 -6.4214 7.3984 19 6 8.4996 -6.6477 6.0290 20 7 7.2186 -6.7730 5.7942 21 6 2.8830 -5.5800 6.4649 22 6 2.9518 -1.4039 3.4027 23 16 2.8387 0.0526 2.5246 24 1 -0.3933 0.4417 0.7650 25 1 1.7924 -0.5138 -0.8900 26 1 3.5347 1.7703 0.0321 27 1 1.5616 2.4679 -1.2085 28 1 1.2155 -2.6686 0.8263 29 1 3.2935 -3.4261 4.9411 30 1 3.9915 -7.3213 4.8391 31 1 4.7734 -5.8631 4.0885 32 1 4.8369 -6.4492 8.2268 33 1 4.7312 -7.6912 6.9562 34 1 7.2420 -6.2575 9.0253 35 1 9.6161 -6.2809 7.9049 36 1 9.2876 -6.7121 5.2932 37 1 2.5694 -4.6753 6.9857 38 1 2.4386 -6.4844 6.8804 39 1 3.4474 -1.5079 4.3565 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688104_6894386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:38:05 Heat of formation + Delta-G solvation = 77.836538 kcal Electronic energy + Delta-G solvation = -23430.880024 eV Core-core repulsion = 19855.684842 eV Total energy + Delta-G solvation = -3575.195182 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.08966 -41.33515 -39.80006 -38.63696 -37.07647 -35.09239 -33.55003 -31.69481 -30.93349 -28.66103 -26.98788 -26.83045 -25.92235 -24.07108 -22.24344 -21.93445 -21.61714 -20.60248 -20.39880 -18.94886 -18.32087 -18.04015 -17.63239 -16.92358 -16.53495 -16.34024 -15.99316 -15.69750 -15.63982 -15.28686 -14.97480 -14.82866 -14.60976 -14.29289 -14.13076 -13.90611 -13.68959 -13.66196 -13.51113 -13.47331 -12.90943 -12.69282 -12.31465 -12.27544 -11.94573 -11.71682 -11.56676 -11.33679 -10.92270 -10.62125 -10.31037 -10.14190 -10.03067 -9.52665 -9.48617 -5.23788 -0.39565 0.30526 0.65352 0.89229 1.00790 1.15565 1.53543 1.57650 1.84469 1.99109 2.03351 2.33670 3.19358 3.30216 3.32895 3.53466 3.54461 3.68364 3.80093 3.91382 3.93094 3.94895 4.04988 4.23188 4.25041 4.31081 4.38096 4.52596 4.60931 4.67861 4.70647 4.72794 4.86043 4.92312 4.99308 5.05744 5.07753 5.13891 5.19866 5.51935 5.76903 6.09587 6.41592 6.44738 6.82593 7.19402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.533 6.533 2 C -0.026 4.026 3 Si 0.656 3.344 4 C -0.243 4.243 5 C -0.053 4.053 6 C -0.155 4.155 7 C 0.581 3.419 8 O -0.529 6.529 9 N -0.709 5.709 10 C 0.119 3.881 11 H 0.108 0.892 12 C -0.134 4.134 13 C -0.122 4.122 14 H 0.093 0.907 15 C 0.142 3.858 16 N -0.372 5.372 17 C 0.049 3.951 18 C -0.275 4.275 19 C 0.041 3.959 20 N -0.289 5.289 21 C -0.137 4.137 22 C -0.206 4.206 23 S 0.197 5.803 24 H 0.381 0.619 25 H 0.125 0.875 26 H -0.237 1.237 27 H -0.232 1.232 28 H 0.157 0.843 29 H 0.398 0.602 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.172 0.828 35 H 0.146 0.854 36 H 0.182 0.818 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.824 4.137 7.021 8.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.339 6.339 2 C -0.139 4.139 3 Si 0.555 3.445 4 C -0.360 4.360 5 C -0.082 4.082 6 C -0.173 4.173 7 C 0.367 3.633 8 O -0.405 6.405 9 N -0.360 5.360 10 C 0.014 3.986 11 H 0.126 0.874 12 C -0.172 4.172 13 C -0.141 4.141 14 H 0.112 0.888 15 C 0.020 3.980 16 N -0.155 5.155 17 C -0.097 4.097 18 C -0.304 4.304 19 C -0.145 4.145 20 N -0.110 5.110 21 C -0.176 4.176 22 C -0.344 4.344 23 S 0.463 5.537 24 H 0.228 0.772 25 H 0.142 0.858 26 H -0.161 1.161 27 H -0.155 1.155 28 H 0.174 0.826 29 H 0.233 0.767 30 H 0.112 0.888 31 H 0.095 0.905 32 H 0.116 0.884 33 H 0.106 0.894 34 H 0.189 0.811 35 H 0.164 0.836 36 H 0.199 0.801 37 H 0.097 0.903 38 H 0.120 0.880 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 0.438 5.069 4.960 7.105 hybrid contribution 0.697 -1.659 0.828 1.981 sum 1.136 3.410 5.788 6.813 Atomic orbital electron populations 1.86548 1.16538 1.81665 1.49108 1.24452 0.85275 1.09083 0.95108 0.95153 0.82072 0.77323 0.89959 1.24795 1.09585 0.98579 1.03052 1.21054 0.97661 0.94442 0.95006 1.20235 1.05732 0.93940 0.97439 1.17599 0.78045 0.87043 0.80604 1.90831 1.42907 1.49611 1.57184 1.45480 1.57755 1.11029 1.21755 1.21847 0.99618 0.82952 0.94182 0.87397 1.23403 0.96637 1.00690 0.96500 1.22900 0.95334 0.99275 0.96554 0.88836 1.21793 0.74607 1.00805 1.00749 1.48754 1.06402 1.55066 1.05236 1.22605 0.89643 1.01750 0.95659 1.21560 0.98137 1.16162 0.94556 1.23952 0.94160 0.99746 0.96658 1.77405 1.06079 1.23539 1.04016 1.23362 0.94704 1.03752 0.95779 1.25773 1.04960 0.98600 1.05050 1.83033 1.50735 1.09295 1.10622 0.77174 0.85832 1.16141 1.15531 0.82591 0.76686 0.88823 0.90546 0.88413 0.89414 0.81068 0.83577 0.80138 0.90306 0.88010 0.81271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.08 12.88 -35.23 -0.45 -0.53 16 2 C -0.03 0.01 2.94 36.00 0.11 0.12 16 3 Si 0.66 -0.98 30.92 -169.99 -5.26 -6.24 16 4 C -0.24 -0.01 5.65 -36.18 -0.20 -0.22 16 5 C -0.05 -0.10 9.95 -39.02 -0.39 -0.49 16 6 C -0.16 -0.22 5.98 -104.63 -0.63 -0.85 16 7 C 0.58 1.75 7.79 -12.63 -0.10 1.65 16 8 O -0.53 -3.71 16.40 5.24 0.09 -3.62 16 9 N -0.71 0.12 5.23 -54.17 -0.28 -0.16 16 10 C 0.12 -0.05 4.32 -67.12 -0.29 -0.34 16 11 H 0.11 0.14 7.46 -51.93 -0.39 -0.25 16 12 C -0.13 0.01 7.43 -25.92 -0.19 -0.18 16 13 C -0.12 0.26 3.71 -89.81 -0.33 -0.07 16 14 H 0.09 -0.13 8.14 -51.93 -0.42 -0.55 16 15 C 0.14 -0.30 6.35 -4.04 -0.03 -0.32 16 16 N -0.37 -0.33 3.68 -61.36 -0.23 -0.56 16 17 C 0.05 0.00 11.45 -17.22 -0.20 -0.20 16 18 C -0.27 -0.21 10.80 -40.01 -0.43 -0.65 16 19 C 0.04 0.08 12.03 -17.36 -0.21 -0.13 16 20 N -0.29 -0.95 12.42 30.63 0.38 -0.57 16 21 C -0.14 0.45 7.39 -25.92 -0.19 0.26 16 22 C -0.21 0.27 10.38 29.93 0.31 0.58 16 23 S 0.20 -0.34 20.20 -107.50 -2.17 -2.52 16 24 H 0.38 -1.46 8.70 45.56 0.40 -1.06 16 25 H 0.12 -0.01 7.96 -51.93 -0.41 -0.42 16 26 H -0.24 -0.11 7.11 56.52 0.40 0.29 16 27 H -0.23 -0.31 7.11 56.52 0.40 0.09 16 28 H 0.16 0.46 8.06 -52.49 -0.42 0.03 16 29 H 0.40 -1.08 7.20 -40.82 -0.29 -1.37 16 30 H 0.09 -0.01 7.90 -51.93 -0.41 -0.42 16 31 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.10 -0.44 8.07 -51.93 -0.42 -0.86 16 33 H 0.09 -0.19 7.84 -51.93 -0.41 -0.60 16 34 H 0.17 -0.58 8.06 -52.49 -0.42 -1.00 16 35 H 0.15 -0.14 8.06 -52.49 -0.42 -0.57 16 36 H 0.18 -0.09 8.06 -52.49 -0.42 -0.51 16 37 H 0.08 -0.31 8.14 -51.93 -0.42 -0.73 16 38 H 0.10 -0.44 8.10 -51.93 -0.42 -0.86 16 39 H 0.17 -0.70 7.01 -52.49 -0.37 -1.07 16 LS Contribution 349.01 15.07 5.26 5.26 Total: 0.00 -9.57 349.01 -10.32 -19.89 By element: Atomic # 1 Polarization: -5.22 SS G_CDS: -4.88 Total: -10.10 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -2.77 Total: -0.85 kcal Atomic # 7 Polarization: -1.16 SS G_CDS: -0.13 Total: -1.29 kcal Atomic # 8 Polarization: -3.79 SS G_CDS: -0.37 Total: -4.16 kcal Atomic # 14 Polarization: -0.98 SS G_CDS: -5.26 Total: -6.24 kcal Atomic # 16 Polarization: -0.34 SS G_CDS: -2.17 Total: -2.52 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -9.57 -10.32 -19.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_6894386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.724 kcal (2) G-P(sol) polarization free energy of solvation -9.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds