Wall clock time and date at job start Sun Mar 7 2021 04:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86297 * 109.46986 * 2 1 4 4 C 1.50699 * 109.47251 * 120.00041 * 2 1 3 5 5 C 1.32769 * 124.71084 * 64.99767 * 4 2 1 6 6 C 1.44433 * 113.08142 * 180.02562 * 5 4 2 7 7 C 1.47185 * 123.45978 * 179.97438 * 6 5 4 8 8 O 1.21643 * 119.99998 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00084 * 180.27366 * 7 6 5 10 10 C 1.46500 * 120.00431 * 179.72617 * 9 7 6 11 11 H 1.09006 * 112.84642 * 336.19847 * 10 9 7 12 12 C 1.53774 * 113.61696 * 107.50253 * 10 9 7 13 13 C 1.53777 * 87.08072 * 89.12070 * 12 10 9 14 14 H 1.09005 * 113.69416 * 270.87294 * 13 12 10 15 15 C 1.53000 * 113.61574 * 139.98143 * 13 12 10 16 16 N 1.46509 * 109.47135 * 87.50177 * 15 13 12 17 17 C 1.34946 * 126.03467 * 124.99269 * 16 15 13 18 18 C 1.35323 * 107.74525 * 179.97438 * 17 16 15 19 19 C 1.39874 * 107.91685 * 0.02562 * 18 17 16 20 20 N 1.30833 * 108.20316 * 359.73837 * 19 18 17 21 21 C 1.53780 * 113.61736 * 205.00698 * 10 9 7 22 22 C 1.36009 * 113.08003 * 0.24895 * 6 5 4 23 23 S 1.70448 * 110.81395 * 359.62275 * 22 6 5 24 24 H 0.96693 * 113.99966 * 300.00317 * 1 2 3 25 25 H 1.08997 * 109.47199 * 240.00151 * 2 1 3 26 26 H 1.48509 * 109.99959 * 178.68093 * 3 2 1 27 27 H 1.48501 * 110.00429 * 299.99574 * 3 2 1 28 28 H 1.07994 * 123.46077 * 0.02562 * 5 4 2 29 29 H 0.97000 * 120.00112 * 359.73054 * 9 7 6 30 30 H 1.09001 * 113.61556 * 203.66763 * 12 10 9 31 31 H 1.09000 * 113.61618 * 334.56933 * 12 10 9 32 32 H 1.08997 * 109.47568 * 207.50010 * 15 13 12 33 33 H 1.08991 * 109.47301 * 327.50673 * 15 13 12 34 34 H 1.07999 * 126.13236 * 359.97120 * 17 16 15 35 35 H 1.07995 * 126.04003 * 180.02562 * 18 17 16 36 36 H 1.08002 * 125.89339 * 179.97438 * 19 18 17 37 37 H 1.09002 * 113.61835 * 25.42623 * 21 10 9 38 38 H 1.09003 * 113.61714 * 156.33419 * 21 10 9 39 39 H 1.07989 * 124.59343 * 179.75451 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.7485 -2.0003 1.4863 6 6 2.3356 -2.4180 2.7381 7 6 2.2684 -3.7981 3.2454 8 8 1.6960 -4.6560 2.6004 9 7 2.8368 -4.1101 4.4269 10 6 2.7648 -5.4824 4.9348 11 1 1.9235 -6.0416 4.5253 12 6 4.1025 -6.2372 4.8619 13 6 4.4042 -5.6782 6.2623 14 1 4.9063 -4.7108 6.2490 15 6 5.0825 -6.6867 7.1918 16 7 6.5344 -6.6213 7.0071 17 6 7.4492 -6.4095 7.9763 18 6 8.6727 -6.4214 7.3984 19 6 8.4996 -6.6477 6.0290 20 7 7.2186 -6.7730 5.7942 21 6 2.8830 -5.5800 6.4649 22 6 2.9518 -1.4039 3.4027 23 16 2.8387 0.0526 2.5246 24 1 -0.3933 0.4417 0.7650 25 1 1.7924 -0.5138 -0.8900 26 1 3.5347 1.7703 0.0321 27 1 1.5616 2.4679 -1.2085 28 1 1.2155 -2.6686 0.8263 29 1 3.2935 -3.4261 4.9411 30 1 3.9915 -7.3213 4.8391 31 1 4.7734 -5.8631 4.0885 32 1 4.8369 -6.4492 8.2268 33 1 4.7312 -7.6912 6.9562 34 1 7.2420 -6.2575 9.0253 35 1 9.6161 -6.2809 7.9049 36 1 9.2876 -6.7121 5.2932 37 1 2.5694 -4.6753 6.9857 38 1 2.4386 -6.4844 6.8804 39 1 3.4474 -1.5079 4.3565 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_6894386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:38:04 Heat of formation + Delta-G solvation = 77.103034 kcal Electronic energy + Delta-G solvation = -23430.911831 eV Core-core repulsion = 19855.684842 eV Total energy + Delta-G solvation = -3575.226989 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.07218 -41.41166 -39.80853 -38.69515 -37.12815 -35.15009 -33.56560 -31.69465 -30.92906 -28.61300 -26.98937 -26.73570 -25.95558 -24.03219 -22.29732 -21.90532 -21.61423 -20.62345 -20.40181 -18.91639 -18.32025 -18.04131 -17.63252 -16.92876 -16.51184 -16.34852 -16.08071 -15.75222 -15.64817 -15.25809 -14.93268 -14.80069 -14.60914 -14.32387 -14.14240 -13.84899 -13.68473 -13.64199 -13.48574 -13.41449 -12.82644 -12.67866 -12.32295 -12.21081 -11.96390 -11.68915 -11.58008 -11.25292 -11.12231 -10.60731 -10.33953 -10.23717 -10.02981 -9.47937 -9.46728 -5.15705 -0.38443 0.35803 0.65957 0.77618 1.02345 1.20202 1.59231 1.68612 1.88951 1.96266 2.00450 2.19222 3.32839 3.37318 3.44406 3.63110 3.66730 3.75619 3.85390 3.93778 4.01629 4.09762 4.22121 4.23350 4.35651 4.38414 4.46559 4.65110 4.67019 4.72831 4.78759 4.81250 4.92506 4.95915 4.99470 5.03053 5.12112 5.13531 5.16987 5.51700 5.76135 6.20839 6.38764 6.67670 6.80552 7.08098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.039 4.039 3 Si 0.745 3.255 4 C -0.249 4.249 5 C -0.077 4.077 6 C -0.184 4.184 7 C 0.576 3.424 8 O -0.584 6.584 9 N -0.693 5.693 10 C 0.109 3.891 11 H 0.085 0.915 12 C -0.138 4.138 13 C -0.108 4.108 14 H 0.091 0.909 15 C 0.134 3.866 16 N -0.376 5.376 17 C 0.054 3.946 18 C -0.293 4.293 19 C 0.024 3.976 20 N -0.332 5.332 21 C -0.114 4.114 22 C -0.191 4.191 23 S 0.258 5.742 24 H 0.397 0.603 25 H 0.112 0.888 26 H -0.257 1.257 27 H -0.273 1.273 28 H 0.130 0.870 29 H 0.413 0.587 30 H 0.089 0.911 31 H 0.046 0.954 32 H 0.133 0.867 33 H 0.087 0.913 34 H 0.208 0.792 35 H 0.159 0.841 36 H 0.191 0.809 37 H 0.097 0.903 38 H 0.118 0.882 39 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.378 5.809 10.026 11.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.151 4.151 3 Si 0.647 3.353 4 C -0.365 4.365 5 C -0.107 4.107 6 C -0.202 4.202 7 C 0.363 3.637 8 O -0.465 6.465 9 N -0.344 5.344 10 C 0.003 3.997 11 H 0.103 0.897 12 C -0.176 4.176 13 C -0.127 4.127 14 H 0.109 0.891 15 C 0.014 3.986 16 N -0.158 5.158 17 C -0.093 4.093 18 C -0.323 4.323 19 C -0.161 4.161 20 N -0.154 5.154 21 C -0.152 4.152 22 C -0.329 4.329 23 S 0.525 5.475 24 H 0.247 0.753 25 H 0.130 0.870 26 H -0.182 1.182 27 H -0.198 1.198 28 H 0.148 0.852 29 H 0.251 0.749 30 H 0.107 0.893 31 H 0.065 0.935 32 H 0.151 0.849 33 H 0.105 0.895 34 H 0.224 0.776 35 H 0.177 0.823 36 H 0.208 0.792 37 H 0.115 0.885 38 H 0.136 0.864 39 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 0.998 6.739 8.014 10.518 hybrid contribution 0.544 -2.153 -0.140 2.225 sum 1.541 4.586 7.874 9.241 Atomic orbital electron populations 1.86507 1.16919 1.82236 1.50363 1.24727 0.85241 1.10427 0.94688 0.94189 0.79291 0.74024 0.87817 1.24918 1.09498 0.98222 1.03899 1.20977 0.98969 0.95096 0.95639 1.20077 1.08183 0.93847 0.98108 1.17953 0.77456 0.87352 0.80897 1.90792 1.45653 1.51225 1.58864 1.45364 1.56679 1.11565 1.20821 1.21939 0.98513 0.82582 0.96658 0.89711 1.23378 0.96312 1.00487 0.97460 1.22760 0.96197 0.98916 0.94786 0.89090 1.22072 0.73191 1.00752 1.02569 1.49001 1.07454 1.54608 1.04758 1.23200 0.89096 1.00037 0.96924 1.21857 0.99364 1.16835 0.94193 1.24302 0.94235 0.99726 0.97836 1.77345 1.06915 1.25221 1.05964 1.23286 0.93495 1.05402 0.93033 1.26162 1.02923 0.98072 1.05731 1.82824 1.48615 1.07651 1.08434 0.75263 0.87024 1.18244 1.19811 0.85196 0.74939 0.89265 0.93523 0.84944 0.89488 0.77569 0.82293 0.79197 0.88451 0.86377 0.78062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.76 12.88 -148.98 -1.92 -2.68 16 2 C -0.04 -0.01 2.94 71.24 0.21 0.20 16 3 Si 0.75 -2.48 30.92 68.60 2.12 -0.35 16 4 C -0.25 -0.20 5.65 24.51 0.14 -0.06 16 5 C -0.08 -0.48 9.95 22.67 0.23 -0.25 16 6 C -0.18 -0.75 5.98 -19.87 -0.12 -0.87 16 7 C 0.58 4.75 7.79 86.59 0.67 5.43 16 8 O -0.58 -10.50 16.40 -4.17 -0.07 -10.57 16 9 N -0.69 -0.32 5.23 -443.53 -2.32 -2.64 16 10 C 0.11 0.03 4.32 45.51 0.20 0.22 16 11 H 0.08 0.44 7.46 -2.38 -0.02 0.42 16 12 C -0.14 -0.19 7.43 31.12 0.23 0.04 16 13 C -0.11 0.54 3.71 -10.27 -0.04 0.50 16 14 H 0.09 -0.36 8.14 -2.38 -0.02 -0.38 16 15 C 0.13 -0.76 6.35 86.38 0.55 -0.21 16 16 N -0.38 -0.41 3.68 -348.05 -1.28 -1.69 16 17 C 0.05 -0.09 11.45 83.54 0.96 0.86 16 18 C -0.29 -0.33 10.80 21.99 0.24 -0.10 16 19 C 0.02 0.11 12.03 85.24 1.03 1.14 16 20 N -0.33 -2.49 12.42 -57.02 -0.71 -3.20 16 21 C -0.11 0.90 7.39 31.12 0.23 1.13 16 22 C -0.19 0.72 10.38 67.30 0.70 1.42 16 23 S 0.26 -1.30 20.20 -56.49 -1.14 -2.44 16 24 H 0.40 -2.92 8.70 -74.06 -0.64 -3.56 16 25 H 0.11 0.21 7.96 -2.39 -0.02 0.19 16 26 H -0.26 0.01 7.11 99.48 0.71 0.71 16 27 H -0.27 -0.91 7.11 99.48 0.71 -0.20 16 28 H 0.13 1.36 8.06 -2.91 -0.02 1.34 16 29 H 0.41 -2.57 7.20 -92.71 -0.67 -3.23 16 30 H 0.09 0.17 7.90 -2.39 -0.02 0.15 16 31 H 0.05 0.34 8.14 -2.39 -0.02 0.33 16 32 H 0.13 -1.65 8.07 -2.39 -0.02 -1.67 16 33 H 0.09 -0.46 7.84 -2.39 -0.02 -0.47 16 34 H 0.21 -2.06 8.06 -2.91 -0.02 -2.08 16 35 H 0.16 -0.41 8.06 -2.91 -0.02 -0.44 16 36 H 0.19 0.08 8.06 -2.91 -0.02 0.05 16 37 H 0.10 -1.05 8.14 -2.39 -0.02 -1.07 16 38 H 0.12 -1.25 8.10 -2.39 -0.02 -1.27 16 39 H 0.20 -2.24 7.01 -2.92 -0.02 -2.26 16 Total: 0.00 -27.29 349.01 -0.28 -27.57 By element: Atomic # 1 Polarization: -13.27 SS G_CDS: -0.18 Total: -13.45 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 5.22 Total: 9.46 kcal Atomic # 7 Polarization: -3.21 SS G_CDS: -4.31 Total: -7.52 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: -1.99 Total: -13.25 kcal Atomic # 14 Polarization: -2.48 SS G_CDS: 2.12 Total: -0.35 kcal Atomic # 16 Polarization: -1.30 SS G_CDS: -1.14 Total: -2.44 kcal Total: -27.29 -0.28 -27.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_6894386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.671 kcal (2) G-P(sol) polarization free energy of solvation -27.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds