Wall clock time and date at job start Sun Mar 7 2021 04:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36776 * 125.80300 * 2 1 4 4 C 1.47266 * 126.93945 * 359.95207 * 3 2 1 5 5 O 1.21633 * 119.99717 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00100 * 180.02562 * 4 3 2 7 7 C 1.46496 * 120.00078 * 180.02562 * 6 4 3 8 8 H 1.09002 * 112.84929 * 23.80980 * 7 6 4 9 9 C 1.53784 * 113.61290 * 154.99815 * 7 6 4 10 10 C 1.53779 * 87.07846 * 89.11893 * 9 7 6 11 11 H 1.09006 * 113.61132 * 270.88385 * 10 9 7 12 12 C 1.52994 * 113.61757 * 139.98092 * 10 9 7 13 13 N 1.46500 * 109.47629 * 174.99724 * 12 10 9 14 14 C 1.34947 * 126.03817 * 124.99403 * 13 12 10 15 15 C 1.35315 * 107.74568 * 179.97438 * 14 13 12 16 16 C 1.39865 * 107.92115 * 0.02562 * 15 14 13 17 17 N 1.30838 * 108.20165 * 359.74024 * 16 15 14 18 18 C 1.53780 * 87.08551 * 25.43005 * 10 9 7 19 19 C 1.46685 * 106.11790 * 179.97438 * 3 2 1 20 20 C 1.34488 * 106.33130 * 359.97438 * 19 3 2 21 21 C 1.50696 * 125.56904 * 180.02562 * 20 19 3 22 22 O 1.42903 * 109.47131 * 299.99634 * 21 20 19 23 23 Si 1.86305 * 109.47185 * 180.02562 * 21 20 19 24 24 N 1.34657 * 125.80297 * 180.28632 * 2 1 3 25 25 H 1.09002 * 109.47135 * 90.00062 * 1 2 3 26 26 H 1.08999 * 109.46809 * 209.99970 * 1 2 3 27 27 H 1.09002 * 109.47018 * 330.00351 * 1 2 3 28 28 H 0.97000 * 119.99810 * 0.02562 * 6 4 3 29 29 H 1.08996 * 113.61378 * 203.66237 * 9 7 6 30 30 H 1.08994 * 113.61557 * 334.48841 * 9 7 6 31 31 H 1.08998 * 109.47465 * 295.00056 * 12 10 9 32 32 H 1.09001 * 109.47341 * 54.99497 * 12 10 9 33 33 H 1.07999 * 126.12533 * 359.97105 * 14 13 12 34 34 H 1.08002 * 126.03897 * 180.02562 * 15 14 13 35 35 H 1.08005 * 125.89967 * 179.97438 * 16 15 14 36 36 H 1.08997 * 113.62034 * 220.01994 * 18 10 9 37 37 H 1.09002 * 113.61489 * 89.11343 * 18 10 9 38 38 H 1.07996 * 126.83094 * 180.02562 * 19 3 2 39 39 H 1.08999 * 109.47358 * 59.99994 * 21 20 19 40 40 H 0.96700 * 114.00311 * 300.00591 * 22 21 20 41 41 H 1.48497 * 110.00233 * 179.97438 * 23 21 20 42 42 H 1.48492 * 109.99800 * 301.31995 * 23 21 20 43 43 H 0.96997 * 124.85327 * 0.03415 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1093 0.0000 4 6 1.8702 2.5157 -0.0010 5 8 0.6838 2.7839 -0.0014 6 7 2.7849 3.5055 -0.0014 7 6 2.3503 4.9045 -0.0018 8 1 1.3472 5.0362 0.4038 9 6 3.3872 5.8718 0.5934 10 6 3.9686 5.9965 -0.8248 11 1 4.7344 5.2540 -1.0495 12 6 4.3940 7.4201 -1.1899 13 7 5.0406 7.4147 -2.5045 14 6 4.6853 8.1669 -3.5670 15 6 5.5274 7.8687 -4.5834 16 6 6.4277 6.9007 -4.1265 17 7 6.1401 6.6316 -2.8788 18 6 2.5722 5.6181 -1.3458 19 6 3.6882 0.6152 0.0006 20 6 3.6095 -0.7274 0.0015 21 6 4.7819 -1.6742 0.0030 22 8 5.5765 -1.4502 -1.1635 23 14 4.1615 -3.4309 0.0030 24 7 2.2947 -1.0921 -0.0055 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 3.7310 3.2915 -0.0014 29 1 2.9540 6.7981 0.9706 30 1 4.0654 5.4011 1.3050 31 1 3.5160 8.0653 -1.2195 32 1 5.0939 7.7932 -0.4423 33 1 3.8742 8.8792 -3.6003 34 1 5.5077 8.3016 -5.5727 35 1 7.2252 6.4553 -4.7029 36 1 2.5934 4.9422 -2.2007 37 1 1.9161 6.4750 -1.4987 38 1 4.5889 1.2110 0.0012 39 1 5.3869 -1.5021 0.8932 40 1 5.1015 -1.5854 -1.9949 41 1 5.3082 -4.3745 0.0038 42 1 3.3074 -3.6678 1.1944 43 1 1.9734 -2.0073 -0.0105 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_9865296.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:38:23 Heat of formation + Delta-G solvation = 84.439009 kcal Electronic energy + Delta-G solvation = -25930.945073 eV Core-core repulsion = 22174.146559 eV Total energy + Delta-G solvation = -3756.798513 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.53597 -42.03798 -40.94997 -39.19175 -37.75416 -35.02549 -33.52591 -32.82661 -31.98632 -30.95559 -28.99745 -28.48081 -26.72566 -25.81946 -24.42800 -23.27122 -21.97660 -21.68036 -21.50733 -20.74543 -20.05193 -18.71149 -18.21732 -17.76586 -17.04423 -16.93233 -16.64732 -16.32761 -15.91459 -15.73676 -15.48570 -15.22123 -15.01827 -14.62631 -14.53311 -14.48753 -14.22144 -14.09295 -13.93520 -13.73371 -13.50252 -13.43800 -13.37723 -12.74019 -12.71264 -12.57887 -12.26803 -12.19275 -11.62460 -11.54769 -11.31803 -11.01114 -10.52214 -10.30927 -10.15808 -9.85440 -9.45219 -9.19177 -5.15676 0.65172 1.02830 1.10011 1.23077 1.48360 1.68982 1.81623 1.97437 1.99466 2.35154 2.46667 3.39952 3.42268 3.53015 3.54543 3.68300 3.82125 3.84726 4.00058 4.04662 4.10546 4.19754 4.22621 4.41578 4.42211 4.47000 4.53274 4.67459 4.70728 4.72148 4.73379 4.74991 4.84299 4.92864 4.98026 5.01274 5.07896 5.16518 5.18404 5.27260 5.61449 5.65306 5.77603 5.81885 6.20856 6.39150 6.58340 6.68349 6.80528 7.28923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.121 3.879 3 C -0.268 4.268 4 C 0.589 3.411 5 O -0.583 6.583 6 N -0.703 5.703 7 C 0.115 3.885 8 H 0.092 0.908 9 C -0.121 4.121 10 C -0.113 4.113 11 H 0.083 0.917 12 C 0.136 3.864 13 N -0.374 5.374 14 C 0.052 3.948 15 C -0.294 4.294 16 C 0.028 3.972 17 N -0.336 5.336 18 C -0.141 4.141 19 C -0.141 4.141 20 C -0.022 4.022 21 C -0.041 4.041 22 O -0.549 6.549 23 Si 0.768 3.232 24 N -0.533 5.533 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.407 0.593 29 H 0.122 0.878 30 H 0.081 0.919 31 H 0.127 0.873 32 H 0.091 0.909 33 H 0.205 0.795 34 H 0.160 0.840 35 H 0.195 0.805 36 H 0.046 0.954 37 H 0.107 0.893 38 H 0.151 0.849 39 H 0.121 0.879 40 H 0.396 0.604 41 H -0.290 1.290 42 H -0.274 1.274 43 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.754 -0.577 -0.962 2.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.001 3.999 3 C -0.278 4.278 4 C 0.380 3.620 5 O -0.465 6.465 6 N -0.353 5.353 7 C 0.009 3.991 8 H 0.110 0.890 9 C -0.159 4.159 10 C -0.132 4.132 11 H 0.101 0.899 12 C 0.016 3.984 13 N -0.156 5.156 14 C -0.094 4.094 15 C -0.323 4.323 16 C -0.157 4.157 17 N -0.159 5.159 18 C -0.180 4.180 19 C -0.165 4.165 20 C -0.130 4.130 21 C -0.152 4.152 22 O -0.356 6.356 23 Si 0.672 3.328 24 N -0.134 5.134 25 H 0.106 0.894 26 H 0.109 0.891 27 H 0.099 0.901 28 H 0.243 0.757 29 H 0.140 0.860 30 H 0.100 0.900 31 H 0.145 0.855 32 H 0.109 0.891 33 H 0.221 0.779 34 H 0.177 0.823 35 H 0.212 0.788 36 H 0.065 0.935 37 H 0.125 0.875 38 H 0.168 0.832 39 H 0.139 0.861 40 H 0.246 0.754 41 H -0.216 1.216 42 H -0.201 1.201 43 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -1.897 -1.845 1.071 2.855 hybrid contribution 0.624 0.468 -0.544 0.951 sum -1.274 -1.377 0.527 1.948 Atomic orbital electron populations 1.20626 0.85834 1.04613 1.04273 1.20579 0.94372 0.85483 0.99427 1.20188 0.94115 0.91789 1.21663 1.17607 0.84994 0.84928 0.74467 1.90719 1.17881 1.84948 1.52974 1.45411 1.09849 1.05084 1.74949 1.21838 0.99528 0.80251 0.97452 0.89000 1.23310 0.97111 1.00264 0.95257 1.22776 0.96686 0.96366 0.97418 0.89889 1.22056 0.98169 0.98196 0.79957 1.48960 1.23893 1.31053 1.11727 1.23170 1.01243 0.97718 0.87307 1.21858 1.01565 1.06574 1.02351 1.24305 1.00762 0.98019 0.92588 1.77252 1.04221 1.18377 1.16008 1.23504 0.96808 1.00832 0.96837 1.21915 0.95327 0.93375 1.05899 1.20685 0.84848 0.95520 1.11985 1.24650 0.91245 1.07522 0.91804 1.86518 1.39767 1.93143 1.16218 0.94250 0.81128 0.71929 0.85513 1.41666 1.05080 1.08811 1.57798 0.89408 0.89056 0.90052 0.75664 0.85988 0.90022 0.85520 0.89063 0.77871 0.82258 0.78799 0.93492 0.87456 0.83181 0.86140 0.75397 1.21634 1.20063 0.73108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.03 9.88 71.23 0.70 0.68 16 2 C 0.12 0.31 7.17 41.78 0.30 0.61 16 3 C -0.27 -1.60 6.29 -19.04 -0.12 -1.72 16 4 C 0.59 5.33 7.81 86.62 0.68 6.00 16 5 O -0.58 -8.66 14.41 -4.14 -0.06 -8.72 16 6 N -0.70 -2.57 5.26 -443.44 -2.33 -4.91 16 7 C 0.11 0.13 4.32 45.52 0.20 0.33 16 8 H 0.09 0.40 7.46 -2.39 -0.02 0.38 16 9 C -0.12 0.57 7.39 31.12 0.23 0.80 16 10 C -0.11 0.23 3.74 -10.27 -0.04 0.19 16 11 H 0.08 0.23 7.97 -2.38 -0.02 0.21 16 12 C 0.14 -0.47 6.34 86.38 0.55 0.08 16 13 N -0.37 -1.13 3.68 -348.07 -1.28 -2.41 16 14 C 0.05 0.03 11.45 83.54 0.96 0.98 16 15 C -0.29 -0.81 10.80 21.99 0.24 -0.58 16 16 C 0.03 0.16 12.03 85.23 1.02 1.18 16 17 N -0.34 -2.88 12.28 -57.02 -0.70 -3.58 16 18 C -0.14 0.01 7.43 31.12 0.23 0.24 16 19 C -0.14 -0.39 10.43 23.62 0.25 -0.14 16 20 C -0.02 0.01 6.11 40.98 0.25 0.26 16 21 C -0.04 0.12 2.98 71.23 0.21 0.33 16 22 O -0.55 0.79 12.87 -148.98 -1.92 -1.13 16 23 Si 0.77 -4.34 30.94 68.60 2.12 -2.22 16 24 N -0.53 1.27 5.41 -171.07 -0.93 0.35 16 25 H 0.09 -0.08 8.14 -2.39 -0.02 -0.10 16 26 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 27 H 0.08 0.45 6.47 -2.39 -0.02 0.44 16 28 H 0.41 0.28 7.82 -92.71 -0.73 -0.45 16 29 H 0.12 -1.08 8.10 -2.39 -0.02 -1.10 16 30 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 31 H 0.13 -1.19 7.77 -2.39 -0.02 -1.21 16 32 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 33 H 0.20 -1.48 8.06 -2.91 -0.02 -1.50 16 34 H 0.16 -0.17 8.06 -2.91 -0.02 -0.20 16 35 H 0.20 0.12 8.06 -2.91 -0.02 0.10 16 36 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.11 -0.38 7.90 -2.39 -0.02 -0.39 16 38 H 0.15 0.14 7.69 -2.91 -0.02 0.11 16 39 H 0.12 -0.24 7.96 -2.39 -0.02 -0.26 16 40 H 0.40 -3.53 8.70 -74.06 -0.64 -4.18 16 41 H -0.29 -0.66 7.11 99.48 0.71 0.05 16 42 H -0.27 0.51 7.11 99.48 0.71 1.21 16 43 H 0.43 -3.55 6.70 -92.71 -0.62 -4.18 16 Total: 0.00 -25.15 362.67 -0.33 -25.48 By element: Atomic # 1 Polarization: -11.22 SS G_CDS: -0.89 Total: -12.11 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 5.66 Total: 9.25 kcal Atomic # 7 Polarization: -5.32 SS G_CDS: -5.24 Total: -10.56 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: -1.98 Total: -9.85 kcal Atomic # 14 Polarization: -4.34 SS G_CDS: 2.12 Total: -2.22 kcal Total: -25.15 -0.33 -25.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_9865296.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.919 kcal (2) G-P(sol) polarization free energy of solvation -25.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds