Wall clock time and date at job start Sun Mar 7 2021 04:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86298 * 109.47605 * 2 1 4 4 C 1.50702 * 109.47242 * 120.00115 * 2 1 3 5 5 C 1.35459 * 126.06607 * 244.69370 * 4 2 1 6 6 N 1.35536 * 108.86774 * 179.83005 * 5 4 2 7 7 C 1.37653 * 108.64748 * 0.42711 * 6 5 4 8 8 C 1.46673 * 126.23440 * 179.77175 * 7 6 5 9 9 O 1.21696 * 119.99725 * 179.97438 * 8 7 6 10 10 N 1.34771 * 120.00030 * 359.96031 * 8 7 6 11 11 C 1.46505 * 119.99881 * 179.97438 * 10 8 7 12 12 H 1.08997 * 112.85320 * 336.19943 * 11 10 8 13 13 C 1.53779 * 113.61165 * 107.51070 * 11 10 8 14 14 C 1.53774 * 87.08523 * 89.11323 * 13 11 10 15 15 H 1.08991 * 113.61777 * 270.88128 * 14 13 11 16 16 C 1.52998 * 113.61526 * 139.97693 * 14 13 11 17 17 N 1.46503 * 109.47160 * 87.50358 * 16 14 13 18 18 C 1.34428 * 126.82369 * 124.99553 * 17 16 14 19 19 N 1.30829 * 108.07690 * 179.97438 * 18 17 16 20 20 C 1.33246 * 109.83090 * 0.02562 * 19 18 17 21 21 N 1.30711 * 108.94170 * 359.74466 * 20 19 18 22 22 C 1.53782 * 113.61128 * 205.00499 * 11 10 8 23 23 C 1.37873 * 107.52992 * 359.74279 * 7 6 5 24 24 H 0.96703 * 114.00176 * 60.00012 * 1 2 3 25 25 H 1.09000 * 109.47224 * 239.99764 * 2 1 3 26 26 H 1.48506 * 109.99834 * 298.68369 * 3 2 1 27 27 H 1.48502 * 110.00011 * 59.99633 * 3 2 1 28 28 H 1.07996 * 125.56279 * 359.97438 * 5 4 2 29 29 H 0.97001 * 125.67899 * 180.17629 * 6 5 4 30 30 H 0.96998 * 120.00045 * 0.02562 * 10 8 7 31 31 H 1.09010 * 113.61048 * 203.66539 * 13 11 10 32 32 H 1.09004 * 113.61646 * 334.56057 * 13 11 10 33 33 H 1.09000 * 109.47330 * 207.50607 * 16 14 13 34 34 H 1.09000 * 109.47543 * 327.50630 * 16 14 13 35 35 H 1.08002 * 125.95876 * 0.02562 * 18 17 16 36 36 H 1.07991 * 125.52686 * 179.97438 * 20 19 18 37 37 H 1.08993 * 113.61929 * 25.43241 * 22 11 10 38 38 H 1.08997 * 113.61460 * 156.33776 * 22 11 10 39 39 H 1.08005 * 126.45407 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6384 -0.1511 2.2414 6 7 2.9053 -1.1029 3.1687 7 6 2.3685 -2.2963 2.7415 8 6 2.4360 -3.5797 3.4483 9 8 1.9185 -4.5690 2.9640 10 7 3.0713 -3.6635 4.6339 11 6 3.1382 -4.9453 5.3402 12 1 2.3353 -5.6264 5.0582 13 6 4.5337 -5.5907 5.3143 14 6 4.8348 -4.8051 6.6014 15 1 5.2489 -3.8132 6.4208 16 6 5.6317 -5.6039 7.6348 17 7 7.0647 -5.4488 7.3727 18 6 8.0008 -5.0235 8.2388 19 7 9.1549 -5.0257 7.6226 20 6 8.9963 -5.4437 6.3674 21 7 7.7343 -5.7197 6.1683 22 6 3.3190 -4.8021 6.8606 23 6 1.7553 -2.0653 1.5284 24 1 -0.3934 0.4417 -0.7651 25 1 1.7923 -0.5139 -0.8900 26 1 1.5879 2.4585 -1.2243 27 1 1.5615 2.4679 1.2085 28 1 2.9383 0.8847 2.3001 29 1 3.3963 -0.9668 3.9941 30 1 3.4836 -2.8749 5.0200 31 1 4.5176 -6.6715 5.4559 32 1 5.1412 -5.2835 4.4629 33 1 5.4031 -5.2346 8.6345 34 1 5.3619 -6.6578 7.5662 35 1 7.8299 -4.7318 9.2645 36 1 9.7835 -5.5423 5.6347 37 1 2.9458 -3.8582 7.2578 38 1 2.9708 -5.6671 7.4251 39 1 1.2363 -2.7935 0.9227 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_10543058.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:38:32 Heat of formation + Delta-G solvation = 103.758538 kcal Electronic energy + Delta-G solvation = -23804.662714 eV Core-core repulsion = 20138.813666 eV Total energy + Delta-G solvation = -3665.849048 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.96821 -42.52518 -41.07334 -39.35468 -37.78322 -35.50059 -34.07253 -32.63679 -32.14135 -30.82609 -29.05970 -26.75151 -26.59199 -25.01857 -23.85177 -22.84234 -22.40171 -21.36896 -20.76021 -20.44342 -19.66704 -18.46958 -18.24649 -17.38787 -16.97949 -16.72572 -16.44502 -16.11858 -15.88965 -15.41606 -15.33005 -15.10053 -14.99256 -14.74079 -14.60893 -14.47320 -14.01801 -14.00303 -13.50723 -13.37435 -13.13605 -12.84273 -12.57921 -12.23542 -11.97020 -11.76483 -11.38345 -11.29105 -10.95629 -10.77693 -10.55468 -10.41395 -10.28539 -9.96976 -9.33181 -4.85975 0.30291 0.72706 1.34493 1.47276 1.50762 1.67682 1.86347 2.02917 2.03362 2.07817 2.19048 3.29562 3.42234 3.52880 3.55467 3.63354 3.70771 3.79729 3.96455 4.05258 4.11196 4.13236 4.21573 4.23144 4.43063 4.58603 4.60100 4.66196 4.74341 4.78451 4.87195 4.94108 4.99395 5.01560 5.09266 5.33381 5.47318 5.48254 5.55123 5.69090 5.97125 6.28418 6.46664 6.67876 6.99621 7.15802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.064 4.064 3 Si 0.785 3.215 4 C -0.189 4.189 5 C 0.059 3.941 6 N -0.515 5.515 7 C -0.070 4.070 8 C 0.591 3.409 9 O -0.574 6.574 10 N -0.697 5.697 11 C 0.107 3.893 12 H 0.086 0.914 13 C -0.138 4.138 14 C -0.108 4.108 15 H 0.092 0.908 16 C 0.130 3.870 17 N -0.378 5.378 18 C 0.256 3.744 19 N -0.585 5.585 20 C 0.183 3.817 21 N -0.344 5.344 22 C -0.113 4.113 23 C -0.105 4.105 24 H 0.391 0.609 25 H 0.077 0.923 26 H -0.295 1.295 27 H -0.283 1.283 28 H 0.213 0.787 29 H 0.437 0.563 30 H 0.410 0.590 31 H 0.092 0.908 32 H 0.048 0.952 33 H 0.145 0.855 34 H 0.095 0.905 35 H 0.259 0.741 36 H 0.228 0.772 37 H 0.096 0.904 38 H 0.120 0.880 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.443 5.247 6.255 8.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.172 4.172 3 Si 0.689 3.311 4 C -0.195 4.195 5 C -0.080 4.080 6 N -0.112 5.112 7 C -0.183 4.183 8 C 0.380 3.620 9 O -0.454 6.454 10 N -0.348 5.348 11 C 0.001 3.999 12 H 0.104 0.896 13 C -0.176 4.176 14 C -0.127 4.127 15 H 0.110 0.890 16 C 0.010 3.990 17 N -0.169 5.169 18 C -0.040 4.040 19 N -0.313 5.313 20 C -0.120 4.120 21 N -0.172 5.172 22 C -0.152 4.152 23 C -0.132 4.132 24 H 0.241 0.759 25 H 0.095 0.905 26 H -0.223 1.223 27 H -0.210 1.210 28 H 0.229 0.771 29 H 0.278 0.722 30 H 0.247 0.753 31 H 0.110 0.890 32 H 0.067 0.933 33 H 0.162 0.838 34 H 0.113 0.887 35 H 0.275 0.725 36 H 0.244 0.756 37 H 0.114 0.886 38 H 0.138 0.862 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.974 4.810 6.147 8.051 hybrid contribution -0.960 -0.121 -0.454 1.069 sum 1.014 4.688 5.693 7.445 Atomic orbital electron populations 1.86570 1.19468 1.80712 1.50653 1.24541 0.83220 1.12320 0.97125 0.94265 0.89440 0.70529 0.76877 1.18970 1.07571 0.93683 0.99276 1.22303 1.01099 0.95729 0.88820 1.41802 1.43101 1.06492 1.19842 1.20103 1.12013 0.86745 0.99471 1.17219 0.77568 0.86415 0.80804 1.90844 1.48798 1.37933 1.67790 1.45360 1.56406 1.12571 1.20448 1.21978 0.98423 0.85280 0.94185 0.89616 1.23399 0.95677 1.00452 0.98117 1.22767 0.95633 0.99388 0.94941 0.88955 1.22254 0.72488 1.02585 1.01685 1.50774 1.10033 1.48092 1.07969 1.26903 0.83215 0.94380 0.99482 1.70547 1.27256 1.26072 1.07473 1.26421 0.94187 0.96973 0.94377 1.78030 1.07936 1.25623 1.05634 1.23290 0.93162 1.05582 0.93139 1.21256 1.00198 0.96656 0.95102 0.75940 0.90461 1.22267 1.21023 0.77079 0.72162 0.75347 0.88994 0.93312 0.83757 0.88707 0.72540 0.75579 0.88585 0.86152 0.85615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.92 12.86 -148.98 -1.92 -4.84 16 2 C -0.06 -0.08 3.01 71.24 0.21 0.14 16 3 Si 0.79 -3.06 30.60 68.60 2.10 -0.96 16 4 C -0.19 -0.65 5.46 -20.12 -0.11 -0.76 16 5 C 0.06 -0.20 10.45 83.48 0.87 0.68 16 6 N -0.51 2.19 5.99 -183.62 -1.10 1.09 16 7 C -0.07 -0.33 7.06 40.35 0.28 -0.05 16 8 C 0.59 4.32 7.79 86.45 0.67 4.99 16 9 O -0.57 -9.79 16.48 -4.34 -0.07 -9.86 16 10 N -0.70 1.08 5.26 -444.00 -2.33 -1.25 16 11 C 0.11 -0.22 4.32 45.52 0.20 -0.02 16 12 H 0.09 0.27 7.46 -2.39 -0.02 0.26 16 13 C -0.14 0.23 7.43 31.12 0.23 0.46 16 14 C -0.11 0.91 3.73 -10.27 -0.04 0.87 16 15 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 16 C 0.13 -1.28 6.39 86.38 0.55 -0.73 16 17 N -0.38 0.85 3.69 -352.06 -1.30 -0.45 16 18 C 0.26 -0.76 12.63 180.36 2.28 1.52 16 19 N -0.59 -2.64 11.19 -204.01 -2.28 -4.92 16 20 C 0.18 0.79 13.03 180.76 2.36 3.15 16 21 N -0.34 -1.62 12.57 -61.25 -0.77 -2.39 16 22 C -0.11 1.20 7.39 31.12 0.23 1.43 16 23 C -0.11 -0.92 10.59 22.57 0.24 -0.68 16 24 H 0.39 -1.21 8.74 -74.06 -0.65 -1.85 16 25 H 0.08 -0.04 7.96 -2.39 -0.02 -0.06 16 26 H -0.30 -0.48 7.11 99.48 0.71 0.23 16 27 H -0.28 -0.26 7.11 99.48 0.71 0.45 16 28 H 0.21 -2.33 6.20 -2.91 -0.02 -2.35 16 29 H 0.44 -5.44 8.19 -92.71 -0.76 -6.20 16 30 H 0.41 -3.52 7.83 -92.71 -0.73 -4.25 16 31 H 0.09 -0.12 7.90 -2.38 -0.02 -0.14 16 32 H 0.05 0.21 8.14 -2.38 -0.02 0.19 16 33 H 0.14 -2.53 8.09 -2.39 -0.02 -2.55 16 34 H 0.09 -0.90 7.84 -2.39 -0.02 -0.92 16 35 H 0.26 -3.44 8.06 -2.91 -0.02 -3.46 16 36 H 0.23 -0.18 8.06 -2.92 -0.02 -0.21 16 37 H 0.10 -1.25 8.14 -2.39 -0.02 -1.27 16 38 H 0.12 -1.60 8.10 -2.39 -0.02 -1.62 16 39 H 0.13 1.55 8.06 -2.91 -0.02 1.53 16 Total: 0.00 -34.87 339.04 -0.67 -35.55 By element: Atomic # 1 Polarization: -21.98 SS G_CDS: -0.98 Total: -22.95 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 7.98 Total: 10.99 kcal Atomic # 7 Polarization: -0.14 SS G_CDS: -7.79 Total: -7.93 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -1.99 Total: -14.70 kcal Atomic # 14 Polarization: -3.06 SS G_CDS: 2.10 Total: -0.96 kcal Total: -34.87 -0.67 -35.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_10543058.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.308 kcal (2) G-P(sol) polarization free energy of solvation -34.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds