Wall clock time and date at job start Sun Mar 7 2021 04:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35541 * 125.67361 * 2 1 4 4 C 1.35452 * 108.86872 * 180.02562 * 3 2 1 5 5 C 1.50705 * 126.06354 * 180.02562 * 4 3 2 6 6 O 1.42906 * 109.46869 * 245.02048 * 5 4 3 7 7 Si 1.86300 * 109.47384 * 5.01792 * 5 4 3 8 8 C 1.39828 * 107.86853 * 0.25651 * 4 3 2 9 9 C 1.37645 * 125.68395 * 179.97438 * 2 1 3 10 10 C 1.46681 * 126.23203 * 0.03058 * 9 2 1 11 11 O 1.21699 * 119.99561 * 5.28915 * 10 9 2 12 12 N 1.34771 * 120.00195 * 185.28518 * 10 9 2 13 13 C 1.46496 * 120.00204 * 185.21263 * 12 10 9 14 14 H 1.09003 * 112.85222 * 23.80597 * 13 12 10 15 15 C 1.53788 * 113.61719 * 154.99683 * 13 12 10 16 16 C 1.53787 * 87.07540 * 89.11711 * 15 13 12 17 17 H 1.08994 * 113.61726 * 270.88313 * 16 15 13 18 18 C 1.53006 * 113.61085 * 140.06855 * 16 15 13 19 19 N 1.46503 * 109.47013 * 174.99888 * 18 16 15 20 20 C 1.34430 * 126.82016 * 124.70831 * 19 18 16 21 21 N 1.30835 * 108.07459 * 179.89108 * 20 19 18 22 22 C 1.33248 * 109.82708 * 0.38429 * 21 20 19 23 23 N 1.30715 * 108.94619 * 359.76119 * 22 21 20 24 24 C 1.53782 * 87.08378 * 25.43645 * 16 15 13 25 25 H 1.08997 * 109.47351 * 85.93585 * 1 2 3 26 26 H 1.09007 * 109.46818 * 205.93212 * 1 2 3 27 27 H 1.09003 * 109.47497 * 325.93070 * 1 2 3 28 28 H 1.08001 * 125.56384 * 0.02562 * 3 2 1 29 29 H 1.09003 * 109.47128 * 125.02103 * 5 4 3 30 30 H 0.96699 * 113.99756 * 60.00165 * 6 5 4 31 31 H 1.48503 * 109.99918 * 58.67996 * 7 5 4 32 32 H 1.48497 * 110.00212 * 180.02562 * 7 5 4 33 33 H 1.08001 * 126.46235 * 179.73965 * 8 4 3 34 34 H 0.97001 * 120.00092 * 5.20803 * 12 10 9 35 35 H 1.08992 * 113.61378 * 203.66477 * 15 13 12 36 36 H 1.08997 * 113.61279 * 334.57413 * 15 13 12 37 37 H 1.09004 * 109.46867 * 294.99625 * 18 16 15 38 38 H 1.09000 * 109.47109 * 54.99551 * 18 16 15 39 39 H 1.07994 * 125.96238 * 0.03974 * 20 19 18 40 40 H 1.07997 * 125.52415 * 179.72324 * 22 21 20 41 41 H 1.09003 * 113.60901 * 220.02156 * 24 16 15 42 42 H 1.08994 * 113.61512 * 89.10946 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1011 0.0000 4 6 3.5521 0.7095 -0.0006 5 6 4.7536 1.6192 -0.0002 6 8 5.4765 1.4539 -1.2218 7 14 4.1926 3.3889 0.1548 8 6 3.5780 -0.6886 -0.0069 9 6 2.2679 -1.1180 0.0005 10 6 1.8126 -2.5124 0.0005 11 8 0.6261 -2.7650 -0.0971 12 7 2.7081 -3.5137 0.1085 13 6 2.2674 -4.9061 -0.0060 14 1 1.3381 -5.0113 -0.5660 15 6 3.3761 -5.8674 -0.4664 16 6 3.7297 -6.0456 1.0196 17 1 4.4574 -5.3212 1.3852 18 6 4.0838 -7.4856 1.3968 19 7 4.5187 -7.5312 2.7951 20 6 4.0084 -8.2998 3.7728 21 7 4.6705 -8.0497 4.8732 22 6 5.6013 -7.1251 4.6402 23 7 5.5475 -6.7763 3.3816 24 6 2.2724 -5.6659 1.3310 25 1 -0.3634 0.0728 -1.0250 26 1 -0.3633 -0.9243 0.4494 27 1 -0.3634 0.8513 0.5757 28 1 1.9080 2.1237 0.0004 29 1 5.3995 1.3677 0.8411 30 1 4.9622 1.6607 -2.0142 31 1 3.4122 3.5667 1.4057 32 1 5.3682 4.2962 0.1557 33 1 4.4584 -1.3142 -0.0129 34 1 3.6445 -3.3125 0.2621 35 1 2.9991 -6.7750 -0.9374 36 1 4.1610 -5.3826 -1.0468 37 1 3.2075 -8.1209 1.2679 38 1 4.8887 -7.8421 0.7541 39 1 3.1954 -9.0030 3.6678 40 1 6.2884 -6.7279 5.3727 41 1 2.1665 -5.0184 2.2015 42 1 1.5938 -6.5185 1.3512 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_10803934.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:38:35 Heat of formation + Delta-G solvation = 109.590893 kcal Electronic energy + Delta-G solvation = -26044.317853 eV Core-core repulsion = 22223.184096 eV Total energy + Delta-G solvation = -3821.133757 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.99636 -42.60558 -41.07526 -39.31949 -37.67710 -35.53465 -34.32318 -33.59076 -32.17205 -30.96178 -29.02237 -28.29994 -26.76011 -25.81072 -24.93670 -23.71351 -22.92544 -22.39710 -21.36042 -20.65582 -20.10673 -18.91342 -18.29706 -17.78340 -17.16949 -16.88295 -16.75653 -16.66168 -15.99780 -15.90678 -15.83809 -15.45976 -15.33993 -15.14837 -14.97837 -14.79248 -14.46353 -14.09726 -13.87110 -13.53381 -13.48884 -13.32047 -13.29320 -13.14891 -12.77477 -12.29341 -12.16092 -11.95902 -11.77132 -11.45324 -11.22143 -10.97942 -10.79776 -10.52411 -10.32921 -10.22013 -9.74214 -9.30687 -4.96413 0.33894 0.69404 1.39784 1.44779 1.48667 1.53285 1.72041 2.00020 2.03233 2.20499 2.25600 3.36486 3.45475 3.46701 3.52897 3.59915 3.68661 3.77842 3.80309 3.92344 4.01289 4.15003 4.18551 4.20710 4.34801 4.36562 4.48076 4.51702 4.62757 4.63635 4.70173 4.72749 4.73304 4.80151 4.93586 5.00661 5.12606 5.16072 5.30304 5.44819 5.48320 5.63781 5.83677 5.94413 6.13215 6.36072 6.88502 7.02594 7.12364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.412 5.412 3 C 0.037 3.963 4 C -0.220 4.220 5 C -0.039 4.039 6 O -0.560 6.560 7 Si 0.782 3.218 8 C -0.115 4.115 9 C -0.080 4.080 10 C 0.589 3.411 11 O -0.579 6.579 12 N -0.694 5.694 13 C 0.115 3.885 14 H 0.095 0.905 15 C -0.117 4.117 16 C -0.117 4.117 17 H 0.083 0.917 18 C 0.132 3.868 19 N -0.376 5.376 20 C 0.255 3.745 21 N -0.586 5.586 22 C 0.185 3.815 23 N -0.348 5.348 24 C -0.143 4.143 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.110 0.890 28 H 0.204 0.796 29 H 0.099 0.901 30 H 0.393 0.607 31 H -0.284 1.284 32 H -0.304 1.304 33 H 0.152 0.848 34 H 0.411 0.589 35 H 0.128 0.872 36 H 0.084 0.916 37 H 0.140 0.860 38 H 0.101 0.899 39 H 0.257 0.743 40 H 0.230 0.770 41 H 0.043 0.957 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.076 -0.522 -5.048 5.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.083 5.083 3 C -0.100 4.100 4 C -0.226 4.226 5 C -0.149 4.149 6 O -0.368 6.368 7 Si 0.689 3.311 8 C -0.141 4.141 9 C -0.193 4.193 10 C 0.379 3.621 11 O -0.461 6.461 12 N -0.344 5.344 13 C 0.010 3.990 14 H 0.114 0.886 15 C -0.155 4.155 16 C -0.136 4.136 17 H 0.101 0.899 18 C 0.011 3.989 19 N -0.167 5.167 20 C -0.041 4.041 21 N -0.314 5.314 22 C -0.118 4.118 23 N -0.177 5.177 24 C -0.182 4.182 25 H 0.107 0.893 26 H 0.102 0.898 27 H 0.129 0.871 28 H 0.221 0.779 29 H 0.117 0.883 30 H 0.243 0.757 31 H -0.210 1.210 32 H -0.232 1.232 33 H 0.169 0.831 34 H 0.248 0.752 35 H 0.146 0.854 36 H 0.103 0.897 37 H 0.158 0.842 38 H 0.119 0.881 39 H 0.273 0.727 40 H 0.246 0.754 41 H 0.062 0.938 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.442 0.159 -4.378 5.572 hybrid contribution 0.646 -0.415 0.643 1.001 sum -2.797 -0.255 -3.736 4.673 Atomic orbital electron populations 1.22452 0.74724 1.05745 1.05010 1.44037 1.07696 1.04743 1.51856 1.22356 0.89649 0.92588 1.05435 1.19907 0.94342 0.94656 1.13715 1.24503 0.92456 1.08545 0.89422 1.86446 1.42140 1.92201 1.16016 0.93981 0.80270 0.72251 0.84636 1.21392 0.94242 0.95357 1.03108 1.20047 0.90921 0.87648 1.20685 1.17168 0.85289 0.84242 0.75437 1.90772 1.17378 1.85304 1.52667 1.45292 1.11421 1.05129 1.72580 1.21921 0.99596 0.79531 0.98000 0.88648 1.23324 0.97455 1.00120 0.94648 1.22820 0.96836 0.96154 0.97788 0.89901 1.22272 1.02718 0.98397 0.75466 1.50752 1.24819 1.29622 1.11464 1.26862 0.98790 0.95621 0.82803 1.70544 1.11602 1.20294 1.28976 1.26429 0.97921 0.94149 0.93284 1.77936 1.09546 1.19542 1.10678 1.23550 0.96881 1.00844 0.96896 0.89258 0.89822 0.87116 0.77930 0.88332 0.75721 1.21039 1.23205 0.83085 0.75200 0.85394 0.89699 0.84183 0.88103 0.72702 0.75361 0.93778 0.86814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.09 10.64 127.77 1.36 1.27 16 2 N -0.41 -0.83 3.16 -534.30 -1.69 -2.52 16 3 C 0.04 -0.06 9.94 83.48 0.83 0.77 16 4 C -0.22 -0.15 5.43 -20.12 -0.11 -0.26 16 5 C -0.04 0.01 3.02 71.24 0.22 0.22 16 6 O -0.56 -0.42 12.88 -148.98 -1.92 -2.34 16 7 Si 0.78 -2.39 30.60 68.60 2.10 -0.29 16 8 C -0.11 -0.29 10.28 22.57 0.23 -0.06 16 9 C -0.08 -0.38 6.88 40.35 0.28 -0.10 16 10 C 0.59 3.73 7.77 86.45 0.67 4.40 16 11 O -0.58 -6.94 14.29 -4.34 -0.06 -7.00 16 12 N -0.69 -0.28 5.24 -443.99 -2.32 -2.60 16 13 C 0.11 -0.30 4.29 45.52 0.20 -0.10 16 14 H 0.10 0.03 7.53 -2.39 -0.02 0.01 16 15 C -0.12 1.03 7.39 31.12 0.23 1.26 16 16 C -0.12 0.70 3.75 -10.26 -0.04 0.67 16 17 H 0.08 -0.08 8.00 -2.39 -0.02 -0.10 16 18 C 0.13 -1.07 6.39 86.38 0.55 -0.52 16 19 N -0.38 0.08 3.69 -352.04 -1.30 -1.22 16 20 C 0.26 -0.15 12.63 180.36 2.28 2.13 16 21 N -0.59 -3.85 11.19 -204.00 -2.28 -6.13 16 22 C 0.18 1.10 13.03 180.76 2.36 3.45 16 23 N -0.35 -2.18 12.45 -61.24 -0.76 -2.95 16 24 C -0.14 0.53 7.43 31.12 0.23 0.77 16 25 H 0.09 -0.30 8.14 -2.39 -0.02 -0.32 16 26 H 0.08 0.29 6.21 -2.38 -0.01 0.28 16 27 H 0.11 -0.79 8.14 -2.39 -0.02 -0.80 16 28 H 0.20 -1.77 6.21 -2.91 -0.02 -1.78 16 29 H 0.10 0.17 7.96 -2.39 -0.02 0.15 16 30 H 0.39 -2.84 8.70 -74.06 -0.64 -3.48 16 31 H -0.28 -0.39 7.11 99.48 0.71 0.31 16 32 H -0.30 -1.56 7.11 99.48 0.71 -0.85 16 33 H 0.15 -0.01 7.50 -2.91 -0.02 -0.04 16 34 H 0.41 -1.10 7.66 -92.71 -0.71 -1.81 16 35 H 0.13 -1.71 8.10 -2.39 -0.02 -1.73 16 36 H 0.08 -0.72 8.14 -2.39 -0.02 -0.74 16 37 H 0.14 -2.13 7.79 -2.38 -0.02 -2.15 16 38 H 0.10 -0.92 8.14 -2.39 -0.02 -0.94 16 39 H 0.26 -2.76 8.06 -2.91 -0.02 -2.78 16 40 H 0.23 0.08 8.06 -2.91 -0.02 0.06 16 41 H 0.04 0.11 8.14 -2.39 -0.02 0.09 16 42 H 0.11 -0.87 7.90 -2.39 -0.02 -0.89 16 Total: 0.00 -29.46 356.97 0.79 -28.67 By element: Atomic # 1 Polarization: -17.26 SS G_CDS: -0.25 Total: -17.51 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 9.28 Total: 13.90 kcal Atomic # 7 Polarization: -7.06 SS G_CDS: -8.36 Total: -15.42 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -1.98 Total: -9.35 kcal Atomic # 14 Polarization: -2.39 SS G_CDS: 2.10 Total: -0.29 kcal Total: -29.46 0.79 -28.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_10803934.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.259 kcal (2) G-P(sol) polarization free energy of solvation -29.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds