Wall clock time and date at job start Sun Mar 7 2021 04:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37650 * 125.67952 * 2 1 4 4 C 1.46680 * 126.23662 * 0.02562 * 3 2 1 5 5 O 1.21700 * 119.99437 * 5.28912 * 4 3 2 6 6 N 1.34770 * 120.00382 * 185.28752 * 4 3 2 7 7 C 1.46502 * 120.00140 * 174.89071 * 6 4 3 8 8 H 1.09003 * 112.90692 * 336.25361 * 7 6 4 9 9 C 1.53780 * 113.61457 * 107.50312 * 7 6 4 10 10 C 1.53788 * 87.07984 * 89.11636 * 9 7 6 11 11 H 1.09000 * 113.69066 * 270.87440 * 10 9 7 12 12 C 1.52994 * 113.61061 * 139.97898 * 10 9 7 13 13 N 1.46504 * 109.47107 * 87.50701 * 12 10 9 14 14 C 1.34426 * 126.82282 * 124.99542 * 13 12 10 15 15 N 1.30833 * 108.07408 * 180.27864 * 14 13 12 16 16 C 1.33239 * 109.83264 * 359.59944 * 15 14 13 17 17 N 1.30716 * 108.94367 * 0.40852 * 16 15 14 18 18 C 1.53782 * 113.61418 * 205.00408 * 7 6 4 19 19 C 1.37876 * 107.53483 * 180.28701 * 3 2 1 20 20 C 1.39836 * 107.08090 * 359.59084 * 19 3 2 21 21 C 1.35455 * 107.86839 * 0.41251 * 20 19 3 22 22 C 1.50694 * 125.56483 * 179.77872 * 21 20 19 23 23 O 1.42901 * 109.47115 * 149.96261 * 22 21 20 24 24 Si 1.86306 * 109.47367 * 29.96181 * 22 21 20 25 25 H 1.09002 * 109.47246 * 95.75227 * 1 2 3 26 26 H 1.09002 * 109.46930 * 215.75720 * 1 2 3 27 27 H 1.08997 * 109.46751 * 335.75405 * 1 2 3 28 28 H 0.97004 * 119.99924 * 354.89755 * 6 4 3 29 29 H 1.09001 * 113.61155 * 334.56981 * 9 7 6 30 30 H 1.08996 * 113.61622 * 203.66832 * 9 7 6 31 31 H 1.08998 * 109.47447 * 327.50709 * 12 10 9 32 32 H 1.08998 * 109.47464 * 207.50153 * 12 10 9 33 33 H 1.07993 * 125.96503 * 0.02562 * 14 13 12 34 34 H 1.07997 * 125.53301 * 180.12400 * 16 15 14 35 35 H 1.09001 * 113.61378 * 156.33833 * 18 7 6 36 36 H 1.08999 * 113.69082 * 25.44421 * 18 7 6 37 37 H 1.07995 * 126.46098 * 179.70398 * 19 3 2 38 38 H 1.08002 * 126.06751 * 180.14061 * 20 19 3 39 39 H 1.08994 * 109.47415 * 269.96055 * 22 21 20 40 40 H 0.96698 * 114.00483 * 180.02562 * 23 22 21 41 41 H 1.48497 * 109.99718 * 59.99559 * 24 22 21 42 42 H 1.48496 * 109.99958 * 181.31684 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2678 1.1181 0.0000 4 6 1.8125 2.5125 0.0005 5 8 0.6260 2.7650 0.0982 6 7 2.7080 3.5139 -0.1071 7 6 2.2470 4.8999 -0.2193 8 1 1.2327 4.9793 -0.6104 9 6 2.4842 5.7328 1.0515 10 6 3.8618 6.0876 0.4670 11 1 4.6472 5.3819 0.7375 12 6 4.2677 7.5448 0.6958 13 7 4.9426 7.6663 1.9905 14 6 6.1623 8.1837 2.2178 15 7 6.4039 8.1048 3.5012 16 6 5.3631 7.5534 4.1241 17 7 4.4441 7.2644 3.2405 18 6 3.2521 5.8286 -0.9209 19 6 3.5780 0.6888 -0.0066 20 6 3.5521 -0.7094 -0.0010 21 6 2.2554 -1.1010 -0.0006 22 6 1.7708 -2.5279 -0.0001 23 8 0.5134 -2.6037 0.6746 24 14 3.0122 -3.6051 0.8772 25 1 -0.3634 -0.1030 -1.0225 26 1 -0.3633 -0.8340 0.6005 27 1 -0.3633 0.9370 0.4220 28 1 3.6578 3.3169 -0.1104 29 1 2.5368 5.1353 1.9616 30 1 1.8155 6.5886 1.1438 31 1 3.3784 8.1751 0.6892 32 1 4.9441 7.8625 -0.0976 33 1 6.8283 8.5895 1.4709 34 1 5.2922 7.3702 5.1860 35 1 2.7934 6.7106 -1.3677 36 1 3.9251 5.3097 -1.6035 37 1 4.4584 1.3143 -0.0128 38 1 4.4132 -1.3613 -0.0018 39 1 1.6531 -2.8720 -1.0276 40 1 0.1409 -3.4952 0.7135 41 1 3.1817 -3.1462 2.2792 42 1 2.5612 -5.0198 0.8568 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_10803936.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:38:39 Heat of formation + Delta-G solvation = 110.990602 kcal Electronic energy + Delta-G solvation = -26100.533139 eV Core-core repulsion = 22279.460079 eV Total energy + Delta-G solvation = -3821.073061 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.95953 -42.60082 -41.06932 -39.32112 -37.89773 -35.52543 -34.28700 -33.53070 -32.13677 -31.48857 -29.11462 -27.53214 -26.87561 -26.71347 -24.53879 -23.27592 -22.83342 -22.39447 -21.65535 -20.47813 -20.19886 -18.87169 -18.52443 -18.18470 -17.32975 -16.92386 -16.80440 -16.58110 -16.18120 -16.06129 -15.65290 -15.55162 -15.14234 -15.13727 -14.65696 -14.61225 -14.46436 -14.07378 -13.97691 -13.67424 -13.48970 -13.23162 -13.11027 -13.06234 -12.83058 -12.59936 -12.18015 -12.11477 -11.73482 -11.26806 -11.20593 -10.94790 -10.78573 -10.77114 -10.54066 -10.20793 -9.77353 -9.09005 -4.89405 0.31248 0.73659 1.15989 1.48668 1.53869 1.66370 1.74833 2.02094 2.03440 2.26011 2.30736 3.06829 3.32064 3.45249 3.55972 3.59711 3.66423 3.69543 3.79129 3.97468 3.98517 4.14246 4.24383 4.26363 4.34685 4.37595 4.45123 4.53811 4.60377 4.64843 4.75308 4.76455 4.83998 4.99000 5.04328 5.05884 5.12706 5.15913 5.34717 5.47823 5.52881 5.74084 5.97103 5.98688 6.11516 6.40894 6.49051 7.06556 7.16346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.407 5.407 3 C -0.091 4.091 4 C 0.587 3.413 5 O -0.588 6.588 6 N -0.687 5.687 7 C 0.111 3.889 8 H 0.085 0.915 9 C -0.139 4.139 10 C -0.109 4.109 11 H 0.091 0.909 12 C 0.131 3.869 13 N -0.378 5.378 14 C 0.257 3.743 15 N -0.586 5.586 16 C 0.182 3.818 17 N -0.345 5.345 18 C -0.111 4.111 19 C -0.124 4.124 20 C -0.206 4.206 21 C 0.044 3.956 22 C -0.069 4.069 23 O -0.561 6.561 24 Si 0.810 3.190 25 H 0.074 0.926 26 H 0.108 0.892 27 H 0.081 0.919 28 H 0.416 0.584 29 H 0.043 0.957 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.146 0.854 33 H 0.260 0.740 34 H 0.227 0.773 35 H 0.122 0.878 36 H 0.098 0.902 37 H 0.177 0.823 38 H 0.187 0.813 39 H 0.103 0.897 40 H 0.400 0.600 41 H -0.310 1.310 42 H -0.278 1.278 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.737 -1.292 -7.569 9.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.080 5.080 3 C -0.204 4.204 4 C 0.377 3.623 5 O -0.471 6.471 6 N -0.338 5.338 7 C 0.005 3.995 8 H 0.103 0.897 9 C -0.178 4.178 10 C -0.128 4.128 11 H 0.109 0.891 12 C 0.010 3.990 13 N -0.169 5.169 14 C -0.039 4.039 15 N -0.314 5.314 16 C -0.120 4.120 17 N -0.174 5.174 18 C -0.150 4.150 19 C -0.150 4.150 20 C -0.229 4.229 21 C -0.074 4.074 22 C -0.176 4.176 23 O -0.373 6.373 24 Si 0.713 3.287 25 H 0.092 0.908 26 H 0.126 0.874 27 H 0.100 0.900 28 H 0.253 0.747 29 H 0.062 0.938 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.164 0.836 33 H 0.276 0.724 34 H 0.243 0.757 35 H 0.140 0.860 36 H 0.116 0.884 37 H 0.194 0.806 38 H 0.204 0.796 39 H 0.121 0.879 40 H 0.252 0.748 41 H -0.238 1.238 42 H -0.205 1.205 Dipole moment (debyes) X Y Z Total from point charges 4.283 -1.206 -6.580 7.943 hybrid contribution -1.345 -0.341 0.485 1.470 sum 2.938 -1.547 -6.095 6.941 Atomic orbital electron populations 1.22437 0.76137 1.05408 1.03897 1.43912 1.07184 1.04755 1.52133 1.20213 0.91694 0.87218 1.21227 1.17242 0.85295 0.84425 0.75330 1.90757 1.18222 1.85367 1.52723 1.45161 1.09895 1.05103 1.73603 1.21953 0.99684 0.79844 0.97974 0.89671 1.23404 0.97603 0.99863 0.96916 1.22771 0.96714 0.95785 0.97558 0.89100 1.22267 0.99888 0.97527 0.79295 1.50779 1.14138 1.44533 1.07403 1.26917 0.87298 0.94552 0.95143 1.70539 1.29694 1.25070 1.06055 1.26404 0.87324 0.96488 1.01818 1.78032 1.24249 1.24682 0.90414 1.23285 0.96910 0.99674 0.95092 1.21690 0.94188 0.95782 1.03329 1.20970 0.95102 0.95606 1.11188 1.20619 0.91268 0.87636 1.07912 1.24931 0.93446 0.96002 1.03247 1.86445 1.35056 1.36084 1.79682 0.93458 0.83756 0.73373 0.78083 0.90786 0.87398 0.89994 0.74668 0.93763 0.89007 0.88667 0.83608 0.72414 0.75670 0.86000 0.88365 0.80617 0.79562 0.87891 0.74789 1.23823 1.20478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.51 10.32 127.77 1.32 1.83 16 2 N -0.41 -3.49 3.16 -519.71 -1.64 -5.14 16 3 C -0.09 -0.68 6.89 40.35 0.28 -0.41 16 4 C 0.59 5.37 7.77 86.45 0.67 6.04 16 5 O -0.59 -9.84 14.18 -4.35 -0.06 -9.90 16 6 N -0.69 -0.66 5.25 -443.99 -2.33 -2.99 16 7 C 0.11 -0.08 4.29 45.52 0.20 0.12 16 8 H 0.09 0.33 7.53 -2.39 -0.02 0.31 16 9 C -0.14 -0.02 7.43 31.12 0.23 0.21 16 10 C -0.11 0.73 3.73 -10.27 -0.04 0.69 16 11 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 12 C 0.13 -1.12 6.39 86.38 0.55 -0.57 16 13 N -0.38 0.30 3.69 -352.08 -1.30 -1.00 16 14 C 0.26 -0.44 12.63 180.36 2.28 1.84 16 15 N -0.59 -3.44 11.19 -204.01 -2.28 -5.72 16 16 C 0.18 1.08 13.03 180.76 2.36 3.44 16 17 N -0.35 -2.23 12.57 -61.25 -0.77 -3.00 16 18 C -0.11 1.06 7.39 31.12 0.23 1.29 16 19 C -0.12 -0.14 10.36 22.57 0.23 0.10 16 20 C -0.21 -0.01 9.37 22.01 0.21 0.19 16 21 C 0.04 0.17 6.18 41.34 0.26 0.43 16 22 C -0.07 0.10 2.98 71.23 0.21 0.31 16 23 O -0.56 -0.27 9.81 -148.98 -1.46 -1.73 16 24 Si 0.81 -3.05 31.10 68.60 2.13 -0.91 16 25 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.11 0.74 5.48 -2.39 -0.01 0.73 16 27 H 0.08 1.02 5.92 -2.39 -0.01 1.01 16 28 H 0.42 -1.99 7.60 -92.71 -0.70 -2.69 16 29 H 0.04 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.09 0.01 7.90 -2.39 -0.02 -0.01 16 31 H 0.10 -0.82 7.84 -2.39 -0.02 -0.84 16 32 H 0.15 -2.42 8.09 -2.39 -0.02 -2.44 16 33 H 0.26 -3.20 8.06 -2.91 -0.02 -3.22 16 34 H 0.23 0.20 8.06 -2.91 -0.02 0.17 16 35 H 0.12 -1.56 8.10 -2.39 -0.02 -1.57 16 36 H 0.10 -1.16 8.14 -2.39 -0.02 -1.18 16 37 H 0.18 -1.10 7.45 -2.91 -0.02 -1.12 16 38 H 0.19 -1.43 6.85 -2.91 -0.02 -1.45 16 39 H 0.10 -0.59 7.96 -2.39 -0.02 -0.61 16 40 H 0.40 -3.20 8.74 -74.06 -0.65 -3.85 16 41 H -0.31 -1.86 7.11 99.48 0.71 -1.16 16 42 H -0.28 0.17 7.11 99.48 0.71 0.88 16 Total: 0.00 -32.70 352.04 1.02 -31.68 By element: Atomic # 1 Polarization: -16.55 SS G_CDS: -0.24 Total: -16.80 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: 8.98 Total: 15.51 kcal Atomic # 7 Polarization: -9.52 SS G_CDS: -8.33 Total: -17.84 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: -1.52 Total: -11.63 kcal Atomic # 14 Polarization: -3.05 SS G_CDS: 2.13 Total: -0.91 kcal Total: -32.70 1.02 -31.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_10803936.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.667 kcal (2) G-P(sol) polarization free energy of solvation -32.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds