Wall clock time and date at job start Sun Mar 7 2021 04:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86308 * 109.47341 * 2 1 4 4 C 1.50702 * 109.46858 * 119.99749 * 2 1 3 5 5 C 1.36454 * 120.29541 * 119.99956 * 4 2 1 6 6 C 1.40088 * 119.25411 * 179.97438 * 5 4 2 7 7 C 1.40857 * 132.86243 * 179.97438 * 6 5 4 8 8 C 1.46564 * 126.58107 * 359.97438 * 7 6 5 9 9 O 1.21723 * 120.00101 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99718 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72448 * 10 8 7 12 12 H 1.09002 * 112.85201 * 24.08188 * 11 10 8 13 13 C 1.53784 * 113.61491 * 155.28109 * 11 10 8 14 14 C 1.53777 * 87.08172 * 89.11442 * 13 11 10 15 15 H 1.08994 * 113.61502 * 270.88324 * 14 13 11 16 16 C 1.53002 * 113.61128 * 140.06614 * 14 13 11 17 17 N 1.46502 * 109.47170 * 174.99685 * 16 14 13 18 18 C 1.34427 * 126.82279 * 124.70527 * 17 16 14 19 19 N 1.30836 * 108.07920 * 179.89822 * 18 17 16 20 20 C 1.33236 * 109.82620 * 0.38663 * 19 18 17 21 21 N 1.30718 * 108.94940 * 359.75745 * 20 19 18 22 22 C 1.53777 * 87.08146 * 25.43581 * 14 13 11 23 23 C 1.40557 * 106.83565 * 180.24818 * 7 6 5 24 24 N 1.30737 * 108.74803 * 359.61346 * 23 7 6 25 25 N 1.36581 * 120.23295 * 0.02562 * 6 5 4 26 26 C 1.36238 * 120.07664 * 359.97438 * 25 6 5 27 27 C 1.35189 * 120.71157 * 0.02562 * 26 25 6 28 28 H 0.96703 * 113.99805 * 59.99764 * 1 2 3 29 29 H 1.08992 * 109.47682 * 239.99734 * 2 1 3 30 30 H 1.48501 * 109.99746 * 298.67987 * 3 2 1 31 31 H 1.48500 * 109.99944 * 59.99726 * 3 2 1 32 32 H 1.07995 * 120.36883 * 359.95922 * 5 4 2 33 33 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 34 34 H 1.08999 * 113.61037 * 203.66621 * 13 11 10 35 35 H 1.08999 * 113.61254 * 334.47782 * 13 11 10 36 36 H 1.08999 * 109.47522 * 294.99880 * 16 14 13 37 37 H 1.09001 * 109.47358 * 54.99783 * 16 14 13 38 38 H 1.08003 * 125.95908 * 0.04966 * 18 17 16 39 39 H 1.07997 * 125.52873 * 179.80723 * 20 19 18 40 40 H 1.08999 * 113.61239 * 220.01646 * 22 14 13 41 41 H 1.08999 * 113.61926 * 89.11880 * 22 14 13 42 42 H 1.08002 * 125.62645 * 179.73976 * 23 7 6 43 43 H 1.08001 * 119.64250 * 180.02562 * 26 25 6 44 44 H 1.07996 * 119.84413 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.7161 -1.8204 1.1124 6 6 3.1713 -2.4633 2.2708 7 6 3.9751 -3.6005 2.4825 8 6 4.5744 -4.4510 1.4502 9 8 4.3946 -4.1979 0.2732 10 7 5.3255 -5.5126 1.8041 11 6 5.9196 -6.3661 0.7723 12 1 6.0508 -5.8510 -0.1793 13 6 7.1750 -7.1191 1.2434 14 6 6.2320 -8.2426 1.7051 15 1 5.8753 -8.1205 2.7278 16 6 6.7704 -9.6475 1.4273 17 7 5.8633 -10.6415 2.0066 18 6 5.2710 -11.6630 1.3641 19 7 4.5422 -12.3194 2.2300 20 6 4.6368 -11.7445 3.4282 21 7 5.4349 -10.7128 3.3422 22 6 5.2404 -7.7397 0.6428 23 6 4.0867 -3.7669 3.8737 24 7 3.4186 -2.8119 4.4660 25 7 2.8313 -1.9824 3.5031 26 6 2.0472 -0.8734 3.6106 27 6 1.5964 -0.2368 2.5065 28 1 -0.3933 0.4417 -0.7651 29 1 1.7924 -0.5138 -0.8899 30 1 1.5880 2.4586 -1.2243 31 1 1.5615 2.4680 1.2085 32 1 2.9830 -2.1990 0.1369 33 1 5.4692 -5.7140 2.7420 34 1 7.8388 -7.4128 0.4302 35 1 7.7000 -6.6244 2.0605 36 1 6.8406 -9.8035 0.3509 37 1 7.7586 -9.7530 1.8750 38 1 5.3799 -11.9017 0.3164 39 1 4.1361 -12.0775 4.3253 40 1 4.2026 -7.7468 0.9761 41 1 5.3752 -8.2031 -0.3346 42 1 4.6356 -4.5528 4.3712 43 1 1.7829 -0.4989 4.5886 44 1 0.9754 0.6408 2.6081 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688106_11618758.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:38:44 Heat of formation + Delta-G solvation = 168.238946 kcal Electronic energy + Delta-G solvation = -30069.740969 eV Core-core repulsion = 25801.046050 eV Total energy + Delta-G solvation = -4268.694919 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 355.143 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.27516 -42.95675 -41.15103 -39.46994 -39.00963 -37.42672 -35.37529 -34.29558 -33.72587 -32.14985 -32.09265 -30.41676 -29.05229 -27.31817 -26.88217 -25.28078 -24.51422 -23.63834 -22.98896 -22.90186 -22.34911 -21.31219 -20.24389 -19.26292 -18.64392 -18.32114 -17.93553 -17.54861 -17.13484 -16.89400 -16.77017 -16.70413 -16.04818 -15.89345 -15.78221 -15.65649 -15.57699 -15.15082 -14.92214 -14.72731 -14.48571 -14.15347 -14.08523 -13.91996 -13.63077 -13.30344 -13.29080 -13.04125 -12.82540 -12.74319 -12.26477 -12.12082 -11.93096 -11.79593 -11.56991 -11.53267 -10.88295 -10.86517 -10.79492 -10.68925 -10.52776 -10.29355 -10.03048 -8.75193 -5.08802 -0.55809 -0.10178 0.71730 1.01711 1.05362 1.10567 1.34786 1.46239 1.76939 2.04596 2.09199 2.18301 2.56339 2.94869 3.12399 3.23168 3.32503 3.35747 3.42876 3.44293 3.52515 3.68783 3.70201 3.84213 3.85508 3.98812 3.99564 4.06278 4.14929 4.24635 4.28706 4.32166 4.41864 4.52710 4.53615 4.56236 4.71262 4.80431 4.88228 4.91556 5.07197 5.10898 5.17187 5.27103 5.32105 5.52139 5.58906 5.66703 5.85811 6.24727 6.32854 6.58050 7.18054 7.37201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.077 4.077 3 Si 0.692 3.308 4 C -0.025 4.025 5 C -0.093 4.093 6 C 0.170 3.830 7 C -0.318 4.318 8 C 0.606 3.394 9 O -0.548 6.548 10 N -0.713 5.713 11 C 0.128 3.872 12 H 0.108 0.892 13 C -0.137 4.137 14 C -0.125 4.125 15 H 0.105 0.895 16 C 0.138 3.862 17 N -0.377 5.377 18 C 0.253 3.747 19 N -0.548 5.548 20 C 0.198 3.802 21 N -0.318 5.318 22 C -0.149 4.149 23 C 0.120 3.880 24 N -0.313 5.313 25 N -0.264 5.264 26 C 0.116 3.884 27 C -0.144 4.144 28 H 0.385 0.615 29 H 0.084 0.916 30 H -0.251 1.251 31 H -0.248 1.248 32 H 0.165 0.835 33 H 0.399 0.601 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.218 0.782 39 H 0.216 0.784 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.198 0.802 43 H 0.177 0.823 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.649 2.931 -2.473 5.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.340 6.340 2 C -0.186 4.186 3 Si 0.591 3.409 4 C -0.030 4.030 5 C -0.112 4.112 6 C 0.049 3.951 7 C -0.333 4.333 8 C 0.396 3.604 9 O -0.426 6.426 10 N -0.364 5.364 11 C 0.022 3.978 12 H 0.126 0.874 13 C -0.176 4.176 14 C -0.144 4.144 15 H 0.123 0.877 16 C 0.016 3.984 17 N -0.167 5.167 18 C -0.044 4.044 19 N -0.274 5.274 20 C -0.105 4.105 21 N -0.146 5.146 22 C -0.187 4.187 23 C -0.061 4.061 24 N -0.133 5.133 25 N -0.028 5.028 26 C -0.010 4.010 27 C -0.165 4.165 28 H 0.234 0.766 29 H 0.102 0.898 30 H -0.176 1.176 31 H -0.171 1.171 32 H 0.182 0.818 33 H 0.233 0.767 34 H 0.119 0.881 35 H 0.099 0.901 36 H 0.122 0.878 37 H 0.110 0.890 38 H 0.234 0.766 39 H 0.233 0.767 40 H 0.091 0.909 41 H 0.111 0.889 42 H 0.214 0.786 43 H 0.195 0.805 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 3.157 4.290 -1.021 5.424 hybrid contribution -0.751 -0.758 -0.859 1.370 sum 2.406 3.532 -1.881 4.669 Atomic orbital electron populations 1.86579 1.16958 1.80339 1.50118 1.24731 0.85051 1.11304 0.97477 0.94465 0.91698 0.73439 0.81345 1.19358 0.95355 0.94146 0.94145 1.20656 0.98520 0.93845 0.98225 1.19220 0.95580 0.94162 0.86115 1.19545 1.16484 1.03769 0.93492 1.16803 0.77157 0.79163 0.87314 1.90779 1.61224 1.72098 1.18536 1.45354 1.52941 1.28532 1.09529 1.21696 0.93006 0.90180 0.92907 0.87366 1.23352 0.96348 0.95598 1.02263 1.22982 0.97973 0.92225 1.01191 0.87706 1.21933 0.91930 0.85907 0.98638 1.50568 1.36080 1.23361 1.06722 1.26102 0.91598 0.86340 1.00350 1.70563 1.24863 1.31180 1.00845 1.26040 0.96450 0.90813 0.97193 1.78011 1.18587 1.22527 0.95516 1.23553 0.99610 0.96501 0.99072 1.24052 0.94373 0.95708 0.91967 1.77645 1.18589 1.06275 1.10767 1.46092 1.31991 1.18953 1.05801 1.21573 0.92296 0.85291 1.01865 1.20795 1.02760 1.02573 0.90415 0.76630 0.89777 1.17553 1.17146 0.81763 0.76652 0.88106 0.90080 0.87778 0.88985 0.76618 0.76747 0.90928 0.88873 0.78574 0.80535 0.82279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.19 12.76 -35.23 -0.45 -0.26 16 2 C -0.08 0.10 2.81 36.01 0.10 0.20 16 3 Si 0.69 -1.60 31.97 -169.99 -5.43 -7.04 16 4 C -0.02 -0.01 4.53 -104.54 -0.47 -0.48 16 5 C -0.09 -0.16 9.35 -39.53 -0.37 -0.53 16 6 C 0.17 0.52 6.76 -84.07 -0.57 -0.05 16 7 C -0.32 -0.80 6.17 -104.68 -0.65 -1.45 16 8 C 0.61 1.64 7.78 -12.90 -0.10 1.54 16 9 O -0.55 -3.08 15.31 5.17 0.08 -3.00 16 10 N -0.71 0.39 5.25 -54.35 -0.29 0.10 16 11 C 0.13 -0.18 4.32 -67.12 -0.29 -0.47 16 12 H 0.11 0.00 7.47 -51.93 -0.39 -0.39 16 13 C -0.14 0.54 7.39 -25.92 -0.19 0.34 16 14 C -0.12 0.36 3.75 -89.81 -0.34 0.03 16 15 H 0.10 -0.13 8.00 -51.93 -0.42 -0.55 16 16 C 0.14 -0.45 6.39 -4.04 -0.03 -0.48 16 17 N -0.38 -0.03 3.69 -62.63 -0.23 -0.26 16 18 C 0.25 0.03 12.63 -90.65 -1.14 -1.12 16 19 N -0.55 -1.67 11.19 -15.83 -0.18 -1.85 16 20 C 0.20 0.46 13.03 -91.81 -1.20 -0.73 16 21 N -0.32 -0.82 12.45 29.29 0.36 -0.46 16 22 C -0.15 0.28 7.43 -25.92 -0.19 0.08 16 23 C 0.12 0.12 11.44 -17.14 -0.20 -0.08 16 24 N -0.31 -0.95 12.57 30.75 0.39 -0.57 16 25 N -0.26 -0.69 3.86 -10.55 -0.04 -0.73 16 26 C 0.12 0.01 11.17 -16.68 -0.19 -0.17 16 27 C -0.14 0.05 8.67 -39.95 -0.35 -0.29 16 28 H 0.39 -1.65 8.74 45.56 0.40 -1.25 16 29 H 0.08 -0.22 7.70 -51.93 -0.40 -0.62 16 30 H -0.25 0.10 7.11 56.52 0.40 0.50 16 31 H -0.25 0.01 7.07 56.52 0.40 0.41 16 32 H 0.16 0.27 7.01 -52.49 -0.37 -0.10 16 33 H 0.40 -1.09 7.62 -40.82 -0.31 -1.40 16 34 H 0.10 -0.53 8.10 -51.93 -0.42 -0.95 16 35 H 0.08 -0.32 8.14 -51.93 -0.42 -0.74 16 36 H 0.10 -0.62 7.79 -51.93 -0.40 -1.02 16 37 H 0.09 -0.34 8.14 -51.93 -0.42 -0.76 16 38 H 0.22 -0.91 8.06 -52.48 -0.42 -1.33 16 39 H 0.22 -0.14 8.06 -52.49 -0.42 -0.57 16 40 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 41 H 0.09 -0.28 7.90 -51.93 -0.41 -0.69 16 42 H 0.20 -0.61 7.46 -52.49 -0.39 -1.00 16 43 H 0.18 -0.46 8.06 -52.49 -0.42 -0.89 16 44 H 0.16 -0.30 7.52 -52.49 -0.39 -0.70 16 LS Contribution 380.77 15.07 5.74 5.74 Total: 0.00 -12.95 380.77 -11.46 -24.41 By element: Atomic # 1 Polarization: -7.18 SS G_CDS: -5.24 Total: -12.42 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -6.16 Total: -3.66 kcal Atomic # 7 Polarization: -3.78 SS G_CDS: 0.02 Total: -3.76 kcal Atomic # 8 Polarization: -2.89 SS G_CDS: -0.37 Total: -3.26 kcal Atomic # 14 Polarization: -1.60 SS G_CDS: -5.43 Total: -7.04 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -12.95 -11.46 -24.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_11618758.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.645 kcal (2) G-P(sol) polarization free energy of solvation -12.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 168.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds