Wall clock time and date at job start Sun Mar 7 2021 04:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86308 * 109.47341 * 2 1 4 4 C 1.50702 * 109.46858 * 119.99749 * 2 1 3 5 5 C 1.36454 * 120.29541 * 119.99956 * 4 2 1 6 6 C 1.40088 * 119.25411 * 179.97438 * 5 4 2 7 7 C 1.40857 * 132.86243 * 179.97438 * 6 5 4 8 8 C 1.46564 * 126.58107 * 359.97438 * 7 6 5 9 9 O 1.21723 * 120.00101 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99718 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72448 * 10 8 7 12 12 H 1.09002 * 112.85201 * 24.08188 * 11 10 8 13 13 C 1.53784 * 113.61491 * 155.28109 * 11 10 8 14 14 C 1.53777 * 87.08172 * 89.11442 * 13 11 10 15 15 H 1.08994 * 113.61502 * 270.88324 * 14 13 11 16 16 C 1.53002 * 113.61128 * 140.06614 * 14 13 11 17 17 N 1.46502 * 109.47170 * 174.99685 * 16 14 13 18 18 C 1.34427 * 126.82279 * 124.70527 * 17 16 14 19 19 N 1.30836 * 108.07920 * 179.89822 * 18 17 16 20 20 C 1.33236 * 109.82620 * 0.38663 * 19 18 17 21 21 N 1.30718 * 108.94940 * 359.75745 * 20 19 18 22 22 C 1.53777 * 87.08146 * 25.43581 * 14 13 11 23 23 C 1.40557 * 106.83565 * 180.24818 * 7 6 5 24 24 N 1.30737 * 108.74803 * 359.61346 * 23 7 6 25 25 N 1.36581 * 120.23295 * 0.02562 * 6 5 4 26 26 C 1.36238 * 120.07664 * 359.97438 * 25 6 5 27 27 C 1.35189 * 120.71157 * 0.02562 * 26 25 6 28 28 H 0.96703 * 113.99805 * 59.99764 * 1 2 3 29 29 H 1.08992 * 109.47682 * 239.99734 * 2 1 3 30 30 H 1.48501 * 109.99746 * 298.67987 * 3 2 1 31 31 H 1.48500 * 109.99944 * 59.99726 * 3 2 1 32 32 H 1.07995 * 120.36883 * 359.95922 * 5 4 2 33 33 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 34 34 H 1.08999 * 113.61037 * 203.66621 * 13 11 10 35 35 H 1.08999 * 113.61254 * 334.47782 * 13 11 10 36 36 H 1.08999 * 109.47522 * 294.99880 * 16 14 13 37 37 H 1.09001 * 109.47358 * 54.99783 * 16 14 13 38 38 H 1.08003 * 125.95908 * 0.04966 * 18 17 16 39 39 H 1.07997 * 125.52873 * 179.80723 * 20 19 18 40 40 H 1.08999 * 113.61239 * 220.01646 * 22 14 13 41 41 H 1.08999 * 113.61926 * 89.11880 * 22 14 13 42 42 H 1.08002 * 125.62645 * 179.73976 * 23 7 6 43 43 H 1.08001 * 119.64250 * 180.02562 * 26 25 6 44 44 H 1.07996 * 119.84413 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.7161 -1.8204 1.1124 6 6 3.1713 -2.4633 2.2708 7 6 3.9751 -3.6005 2.4825 8 6 4.5744 -4.4510 1.4502 9 8 4.3946 -4.1979 0.2732 10 7 5.3255 -5.5126 1.8041 11 6 5.9196 -6.3661 0.7723 12 1 6.0508 -5.8510 -0.1793 13 6 7.1750 -7.1191 1.2434 14 6 6.2320 -8.2426 1.7051 15 1 5.8753 -8.1205 2.7278 16 6 6.7704 -9.6475 1.4273 17 7 5.8633 -10.6415 2.0066 18 6 5.2710 -11.6630 1.3641 19 7 4.5422 -12.3194 2.2300 20 6 4.6368 -11.7445 3.4282 21 7 5.4349 -10.7128 3.3422 22 6 5.2404 -7.7397 0.6428 23 6 4.0867 -3.7669 3.8737 24 7 3.4186 -2.8119 4.4660 25 7 2.8313 -1.9824 3.5031 26 6 2.0472 -0.8734 3.6106 27 6 1.5964 -0.2368 2.5065 28 1 -0.3933 0.4417 -0.7651 29 1 1.7924 -0.5138 -0.8899 30 1 1.5880 2.4586 -1.2243 31 1 1.5615 2.4680 1.2085 32 1 2.9830 -2.1990 0.1369 33 1 5.4692 -5.7140 2.7420 34 1 7.8388 -7.4128 0.4302 35 1 7.7000 -6.6244 2.0605 36 1 6.8406 -9.8035 0.3509 37 1 7.7586 -9.7530 1.8750 38 1 5.3799 -11.9017 0.3164 39 1 4.1361 -12.0775 4.3253 40 1 4.2026 -7.7468 0.9761 41 1 5.3752 -8.2031 -0.3346 42 1 4.6356 -4.5528 4.3712 43 1 1.7829 -0.4989 4.5886 44 1 0.9754 0.6408 2.6081 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_11618758.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:38:43 Heat of formation + Delta-G solvation = 166.834486 kcal Electronic energy + Delta-G solvation = -30069.801871 eV Core-core repulsion = 25801.046050 eV Total energy + Delta-G solvation = -4268.755821 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 355.143 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.35350 -42.95776 -41.11818 -39.47230 -39.06060 -37.40634 -35.35061 -34.36399 -33.74386 -32.21780 -32.13499 -30.44973 -28.95389 -27.32241 -26.67728 -25.30126 -24.48115 -23.69231 -23.00960 -22.87940 -22.31188 -21.38201 -20.13383 -19.30294 -18.58888 -18.24792 -17.94521 -17.55640 -17.11025 -16.98769 -16.77071 -16.65167 -15.99847 -15.89044 -15.75143 -15.67197 -15.58619 -15.12324 -14.89131 -14.73232 -14.45689 -14.16952 -14.03567 -13.76313 -13.42301 -13.32126 -13.24545 -13.07836 -12.71281 -12.69738 -12.17879 -12.08129 -11.98559 -11.70058 -11.63526 -11.37105 -11.00042 -10.94359 -10.87508 -10.75975 -10.47028 -10.27624 -10.05489 -8.83665 -4.91057 -0.61774 -0.16479 0.72653 0.96932 0.98646 1.20186 1.48569 1.60049 1.85279 2.02810 2.03236 2.18859 2.44050 2.98478 3.13023 3.44485 3.47360 3.51704 3.54090 3.56683 3.60829 3.67174 3.84237 3.85875 3.95281 3.98623 4.17042 4.18546 4.24583 4.31533 4.34194 4.54343 4.54888 4.57162 4.70040 4.76529 4.80574 4.91285 5.01722 5.07335 5.09355 5.12230 5.22763 5.25206 5.33987 5.48245 5.60676 5.65029 5.97673 6.24342 6.51848 6.56412 7.15685 7.26751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.087 4.087 3 Si 0.765 3.235 4 C -0.019 4.019 5 C -0.111 4.111 6 C 0.152 3.848 7 C -0.339 4.339 8 C 0.603 3.397 9 O -0.586 6.586 10 N -0.701 5.701 11 C 0.115 3.885 12 H 0.093 0.907 13 C -0.117 4.117 14 C -0.115 4.115 15 H 0.086 0.914 16 C 0.131 3.869 17 N -0.375 5.375 18 C 0.254 3.746 19 N -0.587 5.587 20 C 0.184 3.816 21 N -0.346 5.346 22 C -0.146 4.146 23 C 0.129 3.871 24 N -0.340 5.340 25 N -0.273 5.273 26 C 0.112 3.888 27 C -0.146 4.146 28 H 0.401 0.599 29 H 0.095 0.905 30 H -0.274 1.274 31 H -0.275 1.275 32 H 0.158 0.842 33 H 0.410 0.590 34 H 0.124 0.876 35 H 0.086 0.914 36 H 0.138 0.862 37 H 0.101 0.899 38 H 0.256 0.744 39 H 0.230 0.770 40 H 0.043 0.957 41 H 0.110 0.890 42 H 0.231 0.769 43 H 0.203 0.797 44 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.683 2.977 -2.887 6.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.194 4.194 3 Si 0.666 3.334 4 C -0.025 4.025 5 C -0.131 4.131 6 C 0.031 3.969 7 C -0.354 4.354 8 C 0.393 3.607 9 O -0.468 6.468 10 N -0.351 5.351 11 C 0.010 3.990 12 H 0.111 0.889 13 C -0.155 4.155 14 C -0.135 4.135 15 H 0.104 0.896 16 C 0.011 3.989 17 N -0.166 5.166 18 C -0.042 4.042 19 N -0.315 5.315 20 C -0.119 4.119 21 N -0.175 5.175 22 C -0.184 4.184 23 C -0.051 4.051 24 N -0.160 5.160 25 N -0.037 5.037 26 C -0.014 4.014 27 C -0.167 4.167 28 H 0.252 0.748 29 H 0.113 0.887 30 H -0.200 1.200 31 H -0.201 1.201 32 H 0.176 0.824 33 H 0.246 0.754 34 H 0.142 0.858 35 H 0.105 0.895 36 H 0.156 0.844 37 H 0.119 0.881 38 H 0.272 0.728 39 H 0.246 0.754 40 H 0.062 0.938 41 H 0.128 0.872 42 H 0.247 0.753 43 H 0.220 0.780 44 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 4.219 4.314 -1.424 6.199 hybrid contribution -1.128 -0.717 -0.778 1.546 sum 3.091 3.597 -2.202 5.229 Atomic orbital electron populations 1.86527 1.17344 1.80958 1.51389 1.24960 0.84904 1.12399 0.97178 0.93504 0.90685 0.70844 0.78402 1.19617 0.94221 0.93370 0.95249 1.20647 0.99884 0.94800 0.97735 1.19537 0.95955 0.94685 0.86731 1.19692 1.17333 1.04198 0.94176 1.16940 0.77248 0.79717 0.86830 1.90744 1.62854 1.73285 1.19892 1.45286 1.51802 1.27600 1.10461 1.21853 0.94802 0.90052 0.92296 0.88907 1.23303 0.95305 0.93984 1.02947 1.22816 0.97789 0.93097 0.99752 0.89557 1.22278 0.91481 0.84596 1.00548 1.50757 1.36078 1.23824 1.05909 1.26843 0.90283 0.85579 1.01478 1.70538 1.26590 1.32736 1.01603 1.26425 0.96696 0.90903 0.97847 1.77925 1.19244 1.22953 0.97375 1.23559 0.98122 0.96470 1.00271 1.24564 0.93502 0.95674 0.91393 1.77573 1.19718 1.07173 1.11553 1.46287 1.32355 1.19481 1.05531 1.22126 0.91437 0.84533 1.03295 1.21053 1.02667 1.02957 0.90008 0.74790 0.88656 1.19999 1.20059 0.82417 0.75384 0.85778 0.89537 0.84408 0.88080 0.72821 0.75370 0.93783 0.87188 0.75297 0.78033 0.80563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.37 12.76 -148.98 -1.90 -1.53 16 2 C -0.09 0.21 2.81 71.24 0.20 0.41 16 3 Si 0.77 -3.66 31.97 68.60 2.19 -1.47 16 4 C -0.02 -0.03 4.53 -19.81 -0.09 -0.12 16 5 C -0.11 -0.59 9.35 22.30 0.21 -0.38 16 6 C 0.15 1.19 6.76 39.49 0.27 1.46 16 7 C -0.34 -2.27 6.17 -19.90 -0.12 -2.40 16 8 C 0.60 4.38 7.78 86.41 0.67 5.05 16 9 O -0.59 -8.06 15.31 -4.42 -0.07 -8.13 16 10 N -0.70 0.09 5.25 -444.08 -2.33 -2.25 16 11 C 0.12 -0.29 4.32 45.52 0.20 -0.10 16 12 H 0.09 0.09 7.47 -2.39 -0.02 0.07 16 13 C -0.12 1.07 7.39 31.12 0.23 1.30 16 14 C -0.12 0.76 3.75 -10.27 -0.04 0.72 16 15 H 0.09 -0.20 8.00 -2.39 -0.02 -0.21 16 16 C 0.13 -1.10 6.39 86.38 0.55 -0.54 16 17 N -0.38 0.19 3.69 -352.05 -1.30 -1.11 16 18 C 0.25 -0.15 12.63 180.36 2.28 2.13 16 19 N -0.59 -3.79 11.19 -204.00 -2.28 -6.08 16 20 C 0.18 1.03 13.03 180.77 2.36 3.39 16 21 N -0.35 -1.97 12.45 -61.25 -0.76 -2.74 16 22 C -0.15 0.53 7.43 31.12 0.23 0.76 16 23 C 0.13 0.36 11.44 85.42 0.98 1.34 16 24 N -0.34 -2.34 12.57 -56.62 -0.71 -3.05 16 25 N -0.27 -1.70 3.86 -187.28 -0.72 -2.42 16 26 C 0.11 0.06 11.17 83.31 0.93 0.99 16 27 C -0.15 0.08 8.67 22.03 0.19 0.27 16 28 H 0.40 -3.47 8.74 -74.06 -0.65 -4.12 16 29 H 0.10 -0.46 7.70 -2.39 -0.02 -0.47 16 30 H -0.27 0.25 7.11 99.48 0.71 0.95 16 31 H -0.27 0.05 7.07 99.48 0.70 0.76 16 32 H 0.16 0.94 7.01 -2.91 -0.02 0.92 16 33 H 0.41 -2.04 7.62 -92.71 -0.71 -2.75 16 34 H 0.12 -1.65 8.10 -2.39 -0.02 -1.67 16 35 H 0.09 -0.82 8.14 -2.39 -0.02 -0.84 16 36 H 0.14 -2.07 7.79 -2.39 -0.02 -2.09 16 37 H 0.10 -0.96 8.14 -2.39 -0.02 -0.98 16 38 H 0.26 -2.70 8.06 -2.91 -0.02 -2.72 16 39 H 0.23 0.01 8.06 -2.91 -0.02 -0.02 16 40 H 0.04 0.11 8.14 -2.39 -0.02 0.09 16 41 H 0.11 -0.79 7.90 -2.39 -0.02 -0.81 16 42 H 0.23 -1.45 7.46 -2.91 -0.02 -1.47 16 43 H 0.20 -1.14 8.06 -2.91 -0.02 -1.17 16 44 H 0.18 -0.77 7.52 -2.91 -0.02 -0.79 16 Total: 0.00 -32.69 380.77 0.90 -31.79 By element: Atomic # 1 Polarization: -17.06 SS G_CDS: -0.25 Total: -17.31 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 9.04 Total: 14.28 kcal Atomic # 7 Polarization: -9.53 SS G_CDS: -8.11 Total: -17.64 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -1.97 Total: -9.65 kcal Atomic # 14 Polarization: -3.66 SS G_CDS: 2.19 Total: -1.47 kcal Total: -32.69 0.90 -31.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_11618758.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.624 kcal (2) G-P(sol) polarization free energy of solvation -32.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 166.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds