Wall clock time and date at job start Sun Mar 7 2021 04:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86304 * 109.47349 * 2 1 4 4 C 1.50703 * 109.47055 * 240.00160 * 2 1 3 5 5 C 1.38413 * 119.89009 * 119.72877 * 4 2 1 6 6 C 1.38249 * 120.34046 * 179.72412 * 5 4 2 7 7 C 1.38277 * 120.11356 * 0.55043 * 6 5 4 8 8 F 1.35097 * 120.11288 * 179.74668 * 7 6 5 9 9 C 1.39867 * 119.78247 * 359.72683 * 7 6 5 10 10 C 1.47687 * 120.17022 * 180.02562 * 9 7 6 11 11 O 1.21577 * 119.99879 * 359.96929 * 10 9 7 12 12 N 1.34772 * 120.00505 * 179.97438 * 10 9 7 13 13 C 1.46496 * 120.00705 * 179.97438 * 12 10 9 14 14 H 1.09003 * 112.84681 * 23.79918 * 13 12 10 15 15 C 1.53776 * 113.61830 * 154.99463 * 13 12 10 16 16 C 1.53781 * 87.08265 * 89.11937 * 15 13 12 17 17 H 1.09000 * 113.61288 * 270.80434 * 16 15 13 18 18 C 1.53000 * 113.61881 * 139.98134 * 16 15 13 19 19 N 1.46497 * 109.47148 * 175.00141 * 18 16 15 20 20 C 1.34432 * 126.82419 * 124.71099 * 19 18 16 21 21 N 1.30828 * 108.07861 * 179.89200 * 20 19 18 22 22 C 1.33240 * 109.83024 * 0.38148 * 21 20 19 23 23 N 1.30713 * 108.94511 * 359.76145 * 22 21 20 24 24 C 1.53779 * 87.07895 * 25.43348 * 16 15 13 25 25 C 1.37901 * 119.89234 * 300.00421 * 4 2 1 26 26 H 0.96703 * 114.00193 * 300.00032 * 1 2 3 27 27 H 1.09002 * 109.46984 * 120.00249 * 2 1 3 28 28 H 1.48501 * 109.99997 * 178.67824 * 3 2 1 29 29 H 1.48495 * 110.00011 * 300.00099 * 3 2 1 30 30 H 1.08005 * 119.83126 * 359.97438 * 5 4 2 31 31 H 1.07996 * 119.94841 * 180.24851 * 6 5 4 32 32 H 0.97008 * 119.99663 * 359.97438 * 12 10 9 33 33 H 1.09004 * 113.61771 * 203.66582 * 15 13 12 34 34 H 1.09006 * 113.61706 * 334.48616 * 15 13 12 35 35 H 1.08996 * 109.47150 * 295.00071 * 18 16 15 36 36 H 1.09000 * 109.46946 * 55.00131 * 18 16 15 37 37 H 1.07998 * 125.95679 * 0.03949 * 20 19 18 38 38 H 1.08005 * 125.52959 * 179.79840 * 22 21 20 39 39 H 1.09003 * 113.61289 * 220.02506 * 24 16 15 40 40 H 1.08999 * 113.61753 * 89.12356 * 24 16 15 41 41 H 1.08002 * 120.05663 * 359.97274 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7223 -0.0339 -2.1429 6 6 3.1928 -0.6781 -3.2720 7 6 2.8659 -2.0017 -3.5025 8 9 3.3215 -2.6298 -4.6084 9 6 2.0622 -2.6885 -2.5867 10 6 1.7082 -4.1025 -2.8241 11 8 2.1152 -4.6724 -3.8179 12 7 0.9340 -4.7612 -1.9391 13 6 0.5824 -6.1637 -2.1749 14 1 1.2942 -6.6753 -2.8228 15 6 0.2509 -6.9401 -0.8896 16 6 -1.2055 -6.4868 -1.0850 17 1 -1.4331 -5.5323 -0.6105 18 6 -2.2341 -7.5719 -0.7604 19 7 -3.5838 -7.0112 -0.8611 20 6 -4.5939 -7.4735 -1.6181 21 7 -5.6314 -6.6996 -1.4273 22 6 -5.3211 -5.7320 -0.5655 23 7 -4.0777 -5.8804 -0.1904 24 6 -0.8853 -6.3704 -2.5846 25 6 1.5967 -2.0306 -1.4466 26 1 -0.3934 0.4417 0.7651 27 1 1.7923 -0.5139 0.8900 28 1 3.5346 1.7702 0.0322 29 1 1.5616 2.4679 -1.2084 30 1 2.9765 1.0015 -1.9699 31 1 3.8128 -0.1453 -3.9777 32 1 0.6096 -4.3066 -1.1460 33 1 0.3890 -8.0174 -0.9823 34 1 0.7217 -6.5283 0.0031 35 1 -2.1291 -8.3951 -1.4670 36 1 -2.0677 -7.9389 0.2524 37 1 -4.5563 -8.3349 -2.2684 38 1 -5.9887 -4.9518 -0.2306 39 1 -1.3328 -5.4976 -3.0602 40 1 -1.0579 -7.2917 -3.1408 41 1 0.9760 -2.5548 -0.7350 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_12335834.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:38:55 Heat of formation + Delta-G solvation = 46.688318 kcal Electronic energy + Delta-G solvation = -27900.588172 eV Core-core repulsion = 23700.010168 eV Total energy + Delta-G solvation = -4200.578003 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.18333 -42.97489 -41.72384 -40.52635 -39.40022 -37.48578 -35.54651 -34.24570 -32.74612 -32.41339 -32.14060 -29.09630 -26.78335 -26.68013 -25.93089 -24.56475 -23.27541 -22.89953 -22.35689 -21.76825 -20.30191 -19.31274 -18.70195 -18.38875 -18.17809 -17.86670 -17.19244 -16.99572 -16.76875 -16.50363 -16.11482 -16.03536 -15.93479 -15.61186 -15.46129 -15.09798 -14.96938 -14.71989 -14.57881 -14.14013 -14.00191 -13.87723 -13.56685 -13.44573 -13.30078 -12.80664 -12.71992 -12.53184 -12.17441 -12.02104 -11.78936 -11.46495 -11.30949 -10.95936 -10.77235 -10.61166 -10.50034 -10.42732 -10.20705 -9.91828 -4.93096 -0.71145 -0.21923 0.71224 1.27340 1.41777 1.46501 1.66283 1.79611 1.96110 2.02555 2.28283 2.84248 3.18857 3.21290 3.33112 3.40354 3.44799 3.46691 3.55121 3.61130 3.75078 3.82961 3.92981 4.02421 4.16520 4.18686 4.20513 4.43081 4.48458 4.52521 4.57275 4.61383 4.65539 4.70771 4.71950 4.77880 4.92160 4.95749 4.98801 5.08945 5.32405 5.37853 5.46125 5.47632 5.95420 6.21579 6.89345 6.90664 7.14686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.075 4.075 3 Si 0.766 3.234 4 C -0.100 4.100 5 C -0.074 4.074 6 C -0.153 4.153 7 C 0.135 3.865 8 F -0.132 7.132 9 C -0.185 4.185 10 C 0.559 3.441 11 O -0.566 6.566 12 N -0.692 5.692 13 C 0.107 3.893 14 H 0.092 0.908 15 C -0.115 4.115 16 C -0.114 4.114 17 H 0.088 0.912 18 C 0.132 3.868 19 N -0.376 5.376 20 C 0.254 3.746 21 N -0.587 5.587 22 C 0.185 3.815 23 N -0.345 5.345 24 C -0.145 4.145 25 C -0.021 4.021 26 H 0.407 0.593 27 H 0.109 0.891 28 H -0.282 1.282 29 H -0.296 1.296 30 H 0.142 0.858 31 H 0.165 0.835 32 H 0.413 0.587 33 H 0.127 0.873 34 H 0.089 0.911 35 H 0.138 0.862 36 H 0.103 0.897 37 H 0.255 0.745 38 H 0.232 0.768 39 H 0.044 0.956 40 H 0.112 0.888 41 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.269 0.177 8.741 8.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.185 4.185 3 Si 0.672 3.328 4 C -0.100 4.100 5 C -0.091 4.091 6 C -0.171 4.171 7 C 0.115 3.885 8 F -0.110 7.110 9 C -0.189 4.189 10 C 0.347 3.653 11 O -0.446 6.446 12 N -0.344 5.344 13 C 0.002 3.998 14 H 0.110 0.890 15 C -0.153 4.153 16 C -0.133 4.133 17 H 0.106 0.894 18 C 0.012 3.988 19 N -0.167 5.167 20 C -0.042 4.042 21 N -0.315 5.315 22 C -0.117 4.117 23 N -0.174 5.174 24 C -0.184 4.184 25 C -0.039 4.039 26 H 0.259 0.741 27 H 0.127 0.873 28 H -0.209 1.209 29 H -0.223 1.223 30 H 0.160 0.840 31 H 0.183 0.817 32 H 0.251 0.749 33 H 0.145 0.855 34 H 0.107 0.893 35 H 0.156 0.844 36 H 0.121 0.879 37 H 0.271 0.729 38 H 0.248 0.752 39 H 0.063 0.937 40 H 0.131 0.869 41 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.262 0.386 7.424 7.541 hybrid contribution 0.109 -0.275 -0.685 0.746 sum 1.371 0.111 6.740 6.879 Atomic orbital electron populations 1.86434 1.16725 1.82451 1.51703 1.24748 0.86294 1.10851 0.96595 0.94084 0.77746 0.75580 0.85398 1.19759 0.98729 0.94293 0.97224 1.21185 0.95699 0.99670 0.92572 1.21289 1.03306 0.92314 1.00228 1.18059 0.95378 0.91498 0.83587 1.91565 1.86540 1.82559 1.50317 1.20137 1.05055 0.94978 0.98729 1.18174 0.78322 0.85976 0.82877 1.90838 1.55117 1.69282 1.29347 1.45459 1.50877 1.12745 1.25323 1.21990 0.96767 0.81055 1.00005 0.89026 1.23308 0.93005 1.02424 0.96555 1.22820 0.94777 0.99417 0.96318 0.89382 1.22255 0.74730 0.96002 1.05856 1.50746 1.12963 1.20725 1.32237 1.26832 0.82806 0.99699 0.94860 1.70540 1.30528 1.08488 1.21904 1.26445 0.92406 0.98533 0.94341 1.77921 1.13270 1.04790 1.21414 1.23567 0.95365 1.02884 0.96587 1.21223 0.94852 0.93769 0.94077 0.74106 0.87318 1.20869 1.22322 0.84039 0.81740 0.74892 0.85504 0.89256 0.84438 0.87859 0.72912 0.75238 0.93692 0.86937 0.81796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 3.01 12.74 -148.98 -1.90 1.11 16 2 C -0.07 0.45 2.81 71.24 0.20 0.64 16 3 Si 0.77 -4.77 29.78 68.60 2.04 -2.73 16 4 C -0.10 -0.02 5.42 -19.90 -0.11 -0.13 16 5 C -0.07 -0.13 8.66 22.31 0.19 0.06 16 6 C -0.15 -0.60 10.01 22.28 0.22 -0.37 16 7 C 0.14 1.24 7.29 22.67 0.17 1.40 16 8 F -0.13 -1.95 15.55 44.97 0.70 -1.25 16 9 C -0.18 -1.23 5.88 -20.05 -0.12 -1.35 16 10 C 0.56 5.00 7.77 86.74 0.67 5.67 16 11 O -0.57 -10.02 14.94 -3.96 -0.06 -10.08 16 12 N -0.69 -0.48 5.21 -443.07 -2.31 -2.79 16 13 C 0.11 -0.19 4.32 45.52 0.20 0.01 16 14 H 0.09 0.22 7.46 -2.39 -0.02 0.20 16 15 C -0.11 1.06 7.39 31.12 0.23 1.29 16 16 C -0.11 0.77 3.75 -10.27 -0.04 0.73 16 17 H 0.09 -0.23 8.00 -2.39 -0.02 -0.25 16 18 C 0.13 -1.15 6.39 86.38 0.55 -0.60 16 19 N -0.38 0.36 3.69 -352.07 -1.30 -0.94 16 20 C 0.25 -0.23 12.63 180.36 2.28 2.05 16 21 N -0.59 -3.54 11.19 -204.00 -2.28 -5.83 16 22 C 0.19 0.91 13.03 180.77 2.36 3.27 16 23 N -0.35 -1.72 12.45 -61.24 -0.76 -2.48 16 24 C -0.15 0.47 7.43 31.12 0.23 0.70 16 25 C -0.02 -0.01 9.09 22.52 0.20 0.19 16 26 H 0.41 -6.22 8.74 -74.05 -0.65 -6.87 16 27 H 0.11 -1.21 7.96 -2.39 -0.02 -1.23 16 28 H -0.28 0.36 7.11 99.48 0.71 1.07 16 29 H -0.30 -0.51 7.11 99.48 0.71 0.20 16 30 H 0.14 -0.09 4.86 -2.91 -0.01 -0.10 16 31 H 0.17 -0.05 8.06 -2.91 -0.02 -0.07 16 32 H 0.41 -1.88 6.73 -92.70 -0.62 -2.50 16 33 H 0.13 -1.70 8.10 -2.38 -0.02 -1.72 16 34 H 0.09 -0.89 8.14 -2.38 -0.02 -0.91 16 35 H 0.14 -2.10 7.79 -2.39 -0.02 -2.12 16 36 H 0.10 -1.05 8.14 -2.39 -0.02 -1.07 16 37 H 0.26 -2.71 8.06 -2.91 -0.02 -2.73 16 38 H 0.23 -0.20 8.06 -2.91 -0.02 -0.22 16 39 H 0.04 0.13 8.14 -2.39 -0.02 0.12 16 40 H 0.11 -0.76 7.90 -2.39 -0.02 -0.78 16 41 H 0.16 -0.86 6.40 -2.91 -0.02 -0.88 16 Total: 0.00 -32.54 354.18 1.24 -31.30 By element: Atomic # 1 Polarization: -19.75 SS G_CDS: -0.13 Total: -19.89 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 7.24 Total: 13.56 kcal Atomic # 7 Polarization: -5.38 SS G_CDS: -6.65 Total: -12.03 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -1.96 Total: -8.97 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.70 Total: -1.25 kcal Atomic # 14 Polarization: -4.77 SS G_CDS: 2.04 Total: -2.73 kcal Total: -32.54 1.24 -31.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_12335834.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.987 kcal (2) G-P(sol) polarization free energy of solvation -32.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds