Wall clock time and date at job start Sun Mar 7 2021 04:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47238 * 2 1 4 4 C 1.53000 * 109.47057 * 65.12632 * 3 2 1 5 5 C 1.53005 * 109.46847 * 185.12502 * 3 2 1 6 6 C 1.50696 * 109.46793 * 180.30467 * 5 3 2 7 7 O 1.21286 * 120.00471 * 95.28739 * 6 5 3 8 8 N 1.34785 * 120.00176 * 275.28948 * 6 5 3 9 9 C 1.46497 * 120.00100 * 184.03830 * 8 6 5 10 10 H 1.09004 * 112.85207 * 23.80380 * 9 8 6 11 11 C 1.53781 * 113.61318 * 154.99585 * 9 8 6 12 12 C 1.53782 * 87.08176 * 89.11615 * 11 9 8 13 13 H 1.08998 * 113.61453 * 270.80071 * 12 11 9 14 14 C 1.53002 * 113.61328 * 139.97665 * 12 11 9 15 15 N 1.46499 * 109.46819 * 175.00094 * 14 12 11 16 16 C 1.34433 * 126.82354 * 125.00125 * 15 14 12 17 17 N 1.30830 * 108.08024 * 179.97438 * 16 15 14 18 18 C 1.33244 * 109.82514 * 0.02562 * 17 16 15 19 19 N 1.30705 * 108.95044 * 359.75504 * 18 17 16 20 20 C 1.53775 * 113.61432 * 252.49423 * 9 8 6 21 21 N 1.46491 * 109.47036 * 300.30360 * 5 3 2 22 22 C 1.36348 * 125.63807 * 293.75305 * 21 5 3 23 23 C 1.34853 * 108.21652 * 180.02562 * 22 21 5 24 24 C 1.40889 * 107.41989 * 359.97438 * 23 22 21 25 25 C 1.34855 * 107.41814 * 0.02562 * 24 23 22 26 26 C 1.50694 * 125.88884 * 180.02562 * 25 24 23 27 27 O 1.42902 * 109.46978 * 149.99854 * 26 25 24 28 28 Si 1.86299 * 109.47511 * 29.99767 * 26 25 24 29 29 H 1.09007 * 109.47127 * 60.00215 * 1 2 3 30 30 H 1.09002 * 109.47119 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47533 * 300.00086 * 1 2 3 32 32 H 1.09002 * 109.47014 * 239.99877 * 2 1 3 33 33 H 1.09003 * 109.46720 * 120.00027 * 2 1 3 34 34 H 1.09003 * 109.46845 * 305.12255 * 3 2 1 35 35 H 1.08996 * 109.46951 * 54.14594 * 4 3 2 36 36 H 1.08995 * 109.47060 * 174.14908 * 4 3 2 37 37 H 1.08997 * 109.47065 * 294.14624 * 4 3 2 38 38 H 1.08998 * 109.46789 * 60.30556 * 5 3 2 39 39 H 0.96996 * 119.99584 * 4.03673 * 8 6 5 40 40 H 1.09000 * 113.61407 * 203.66158 * 11 9 8 41 41 H 1.08999 * 113.61325 * 334.48501 * 11 9 8 42 42 H 1.08995 * 109.47155 * 295.00226 * 14 12 11 43 43 H 1.08997 * 109.47000 * 55.00894 * 14 12 11 44 44 H 1.08000 * 125.95558 * 359.97438 * 16 15 14 45 45 H 1.08005 * 125.52160 * 179.97438 * 18 17 16 46 46 H 1.08998 * 113.61665 * 25.43417 * 20 9 8 47 47 H 1.09000 * 113.61581 * 156.33745 * 20 9 8 48 48 H 1.07994 * 125.88675 * 0.04943 * 22 21 5 49 49 H 1.08003 * 126.28671 * 179.73943 * 23 22 21 50 50 H 1.07998 * 126.29024 * 179.97438 * 24 23 22 51 51 H 1.09002 * 109.47004 * 269.99162 * 26 25 24 52 52 H 0.96699 * 114.00210 * 179.97438 * 27 26 25 53 53 H 1.48499 * 109.99906 * 298.68071 * 28 26 25 54 54 H 1.48500 * 109.99971 * 59.99584 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6380 2.1255 1.3087 5 6 3.5646 1.4443 -0.1289 6 6 4.0676 2.8648 -0.1213 7 8 4.4490 3.3677 0.9144 8 7 4.0936 3.5766 -1.2656 9 6 4.6642 4.9259 -1.2761 10 1 5.3796 5.0893 -0.4700 11 6 5.1806 5.3655 -2.6563 12 6 3.7658 5.9042 -2.9268 13 1 3.0960 5.1682 -3.3715 14 6 3.7509 7.2440 -3.6654 15 7 2.3685 7.6127 -3.9802 16 6 1.7453 8.7578 -3.6522 17 7 0.5228 8.7016 -4.1147 18 6 0.3292 7.5413 -4.7404 19 7 1.4323 6.8421 -4.6890 20 6 3.6110 6.0391 -1.4027 21 7 4.1507 0.7128 0.9969 22 6 4.1042 1.0967 2.3044 23 6 4.7521 0.1701 3.0392 24 6 5.2152 -0.8226 2.1531 25 6 4.8330 -0.4645 0.9104 26 6 5.1112 -1.2334 -0.3554 27 8 4.0587 -1.0027 -1.2940 28 14 5.2098 -3.0530 0.0322 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6037 1.9821 -0.8406 35 1 1.9862 1.5289 2.1518 36 1 2.0885 3.1170 1.3544 37 1 0.5527 2.2173 1.3522 38 1 3.8507 0.9625 -1.0638 39 1 3.7346 3.1955 -2.0821 40 1 5.9425 6.1437 -2.6099 41 1 5.4635 4.5341 -3.3019 42 1 4.1969 8.0121 -3.0336 43 1 4.3228 7.1560 -4.5891 44 1 2.1784 9.5805 -3.1027 45 1 -0.5892 7.2305 -5.2162 46 1 2.6254 5.7515 -1.0368 47 1 3.9438 7.0014 -1.0136 48 1 3.6298 1.9889 2.6857 49 1 4.8937 0.1878 4.1098 50 1 5.7742 -1.7073 2.4199 51 1 6.0576 -0.9009 -0.7819 52 1 4.1722 -1.4673 -2.1344 53 1 6.3212 -3.3103 0.9829 54 1 3.9254 -3.5186 0.6143 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_12360566.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:39:33 Heat of formation + Delta-G solvation = 111.694614 kcal Electronic energy + Delta-G solvation = -36037.644904 eV Core-core repulsion = 31594.451896 eV Total energy + Delta-G solvation = -4443.193009 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.211 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -43.00272 -42.93117 -41.26285 -39.67576 -37.73741 -37.56878 -35.47591 -34.02039 -33.32547 -32.15281 -31.41459 -30.53230 -29.30785 -28.07959 -26.76848 -25.95420 -25.40056 -24.41786 -22.94427 -22.52438 -22.25183 -21.73735 -21.56522 -20.35647 -20.02430 -18.69313 -18.25130 -18.15660 -17.73187 -17.16780 -16.86790 -16.73921 -16.28074 -15.99777 -15.98076 -15.75007 -15.36495 -15.29221 -15.13803 -15.02872 -14.78451 -14.76005 -14.43126 -14.20524 -13.90323 -13.83489 -13.52110 -13.40282 -13.31843 -13.27825 -13.10814 -13.05246 -12.75640 -12.73910 -12.46063 -12.16854 -12.11580 -12.01603 -11.84802 -11.77168 -11.54055 -11.45094 -11.03568 -10.96470 -10.77895 -10.52077 -10.48872 -10.19840 -9.69082 -8.98342 -4.95748 0.70324 0.95501 1.18200 1.39221 1.45319 1.70418 1.74915 1.89292 2.01712 2.13800 2.18327 3.18934 3.31577 3.36441 3.45407 3.47556 3.53837 3.54430 3.68009 3.76392 3.77441 3.92416 3.94948 4.10139 4.15866 4.19015 4.22989 4.32921 4.39722 4.45346 4.48308 4.50202 4.51692 4.53740 4.58587 4.62133 4.64931 4.71931 4.78073 4.84257 4.93055 4.94261 4.99811 5.00905 5.11827 5.13777 5.18478 5.22148 5.27928 5.31787 5.42818 5.46740 5.48571 5.87140 5.94400 6.12619 6.19590 6.37735 6.89126 6.98200 7.13969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.105 4.105 3 C -0.082 4.082 4 C -0.163 4.163 5 C 0.121 3.879 6 C 0.508 3.492 7 O -0.559 6.559 8 N -0.694 5.694 9 C 0.112 3.888 10 H 0.086 0.914 11 C -0.117 4.117 12 C -0.112 4.112 13 H 0.090 0.910 14 C 0.131 3.869 15 N -0.376 5.376 16 C 0.254 3.746 17 N -0.586 5.586 18 C 0.185 3.815 19 N -0.344 5.344 20 C -0.144 4.144 21 N -0.409 5.409 22 C 0.016 3.984 23 C -0.228 4.228 24 C -0.229 4.229 25 C 0.022 3.978 26 C -0.043 4.043 27 O -0.555 6.555 28 Si 0.806 3.194 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.092 0.908 33 H 0.034 0.966 34 H 0.106 0.894 35 H 0.056 0.944 36 H 0.045 0.955 37 H 0.069 0.931 38 H 0.162 0.838 39 H 0.415 0.585 40 H 0.121 0.879 41 H 0.089 0.911 42 H 0.135 0.865 43 H 0.101 0.899 44 H 0.254 0.746 45 H 0.231 0.769 46 H 0.047 0.953 47 H 0.107 0.893 48 H 0.162 0.838 49 H 0.139 0.861 50 H 0.133 0.867 51 H 0.098 0.902 52 H 0.410 0.590 53 H -0.301 1.301 54 H -0.309 1.309 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.354 -0.139 -8.540 9.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.142 4.142 3 C -0.101 4.101 4 C -0.220 4.220 5 C 0.015 3.985 6 C 0.294 3.706 7 O -0.436 6.436 8 N -0.346 5.346 9 C 0.007 3.993 10 H 0.104 0.896 11 C -0.155 4.155 12 C -0.132 4.132 13 H 0.109 0.891 14 C 0.011 3.989 15 N -0.166 5.166 16 C -0.042 4.042 17 N -0.314 5.314 18 C -0.117 4.117 19 N -0.173 5.173 20 C -0.182 4.182 21 N -0.085 5.085 22 C -0.114 4.114 23 C -0.252 4.252 24 C -0.253 4.253 25 C -0.089 4.089 26 C -0.152 4.152 27 O -0.366 6.366 28 Si 0.712 3.288 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.111 0.889 33 H 0.053 0.947 34 H 0.124 0.876 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.087 0.913 38 H 0.179 0.821 39 H 0.253 0.747 40 H 0.140 0.860 41 H 0.108 0.892 42 H 0.153 0.847 43 H 0.120 0.880 44 H 0.270 0.730 45 H 0.247 0.753 46 H 0.066 0.934 47 H 0.125 0.875 48 H 0.179 0.821 49 H 0.157 0.843 50 H 0.151 0.849 51 H 0.115 0.885 52 H 0.264 0.736 53 H -0.229 1.229 54 H -0.237 1.237 Dipole moment (debyes) X Y Z Total from point charges 3.172 -0.306 -7.300 7.965 hybrid contribution -0.203 0.540 0.886 1.057 sum 2.969 0.234 -6.414 7.072 Atomic orbital electron populations 1.21808 0.95217 1.01883 1.02012 1.21457 0.95875 0.94199 1.02713 1.21394 0.90340 0.98717 0.99671 1.22196 1.02174 0.99841 0.97800 1.21810 0.95262 0.89319 0.92067 1.20895 0.77521 0.88301 0.83916 1.90746 1.48475 1.71869 1.32549 1.45513 1.61694 1.16131 1.11294 1.21887 0.96166 0.81186 1.00063 0.89611 1.23299 0.95930 1.02270 0.94015 1.22808 0.98892 0.96764 0.94690 0.89149 1.22255 0.75816 0.98586 1.02289 1.50744 1.12725 1.13163 1.39982 1.26816 0.88654 0.91896 0.96858 1.70547 1.18166 1.23287 1.19429 1.26439 0.98499 0.88698 0.98105 1.77918 1.00607 1.20472 1.18288 1.23529 0.98899 0.99930 0.95883 1.43608 1.41812 1.17208 1.05851 1.21953 1.05278 1.01042 0.83142 1.21036 1.06931 0.97451 0.99805 1.20706 1.09737 1.02421 0.92478 1.20320 1.03084 0.89457 0.96078 1.24384 0.93604 1.09543 0.87694 1.86291 1.45662 1.74618 1.30050 0.94971 0.75673 0.72609 0.85518 0.91504 0.92674 0.93404 0.88910 0.94672 0.87616 0.92500 0.93586 0.91252 0.82064 0.74744 0.86031 0.89241 0.84664 0.88041 0.73014 0.75281 0.93376 0.87515 0.82068 0.84289 0.84936 0.88452 0.73650 1.22881 1.23748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.00 9.67 71.98 0.70 0.70 16 2 C -0.10 -0.10 4.86 30.59 0.15 0.05 16 3 C -0.08 0.00 2.26 -10.79 -0.02 -0.03 16 4 C -0.16 -0.66 7.36 71.98 0.53 -0.13 16 5 C 0.12 0.13 2.22 44.25 0.10 0.23 16 6 C 0.51 1.65 6.02 87.65 0.53 2.18 16 7 O -0.56 -6.54 13.48 -3.05 -0.04 -6.58 16 8 N -0.69 2.52 5.26 -440.04 -2.31 0.20 16 9 C 0.11 -0.50 4.30 45.52 0.20 -0.30 16 10 H 0.09 0.03 7.52 -2.39 -0.02 0.02 16 11 C -0.12 1.27 7.39 31.12 0.23 1.50 16 12 C -0.11 0.96 3.76 -10.26 -0.04 0.93 16 13 H 0.09 -0.44 8.01 -2.39 -0.02 -0.46 16 14 C 0.13 -1.28 6.39 86.38 0.55 -0.72 16 15 N -0.38 0.77 3.69 -352.07 -1.30 -0.53 16 16 C 0.25 -0.46 12.63 180.36 2.28 1.82 16 17 N -0.59 -3.00 11.19 -204.00 -2.28 -5.28 16 18 C 0.19 0.72 13.03 180.77 2.36 3.07 16 19 N -0.34 -1.29 12.46 -61.24 -0.76 -2.06 16 20 C -0.14 0.79 7.43 31.12 0.23 1.02 16 21 N -0.41 -2.85 1.91 -491.53 -0.94 -3.78 16 22 C 0.02 0.18 7.44 83.21 0.62 0.80 16 23 C -0.23 -2.77 10.86 22.14 0.24 -2.52 16 24 C -0.23 -2.48 9.43 22.14 0.21 -2.27 16 25 C 0.02 0.15 6.19 41.08 0.25 0.41 16 26 C -0.04 0.11 2.93 71.23 0.21 0.32 16 27 O -0.55 4.32 7.81 -148.98 -1.16 3.16 16 28 Si 0.81 -1.77 31.25 68.60 2.14 0.38 16 29 H 0.07 -0.15 8.14 -2.38 -0.02 -0.17 16 30 H 0.05 0.02 8.14 -2.39 -0.02 0.01 16 31 H 0.05 0.07 6.70 -2.39 -0.02 0.06 16 32 H 0.09 -0.13 6.31 -2.39 -0.02 -0.15 16 33 H 0.03 0.26 7.76 -2.39 -0.02 0.24 16 34 H 0.11 -0.39 8.14 -2.39 -0.02 -0.41 16 35 H 0.06 0.42 5.26 -2.39 -0.01 0.41 16 36 H 0.05 0.32 6.50 -2.39 -0.02 0.30 16 37 H 0.07 0.18 6.86 -2.39 -0.02 0.16 16 38 H 0.16 -0.56 5.43 -2.39 -0.01 -0.57 16 39 H 0.42 -3.65 8.70 -92.71 -0.81 -4.45 16 40 H 0.12 -1.72 8.10 -2.39 -0.02 -1.74 16 41 H 0.09 -1.04 8.14 -2.39 -0.02 -1.06 16 42 H 0.14 -2.15 7.79 -2.39 -0.02 -2.17 16 43 H 0.10 -1.10 8.14 -2.39 -0.02 -1.12 16 44 H 0.25 -2.87 8.06 -2.91 -0.02 -2.90 16 45 H 0.23 -0.40 8.06 -2.91 -0.02 -0.43 16 46 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 47 H 0.11 -0.86 7.90 -2.39 -0.02 -0.88 16 48 H 0.16 1.88 5.87 -2.91 -0.02 1.86 16 49 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 50 H 0.13 1.31 6.75 -2.91 -0.02 1.29 16 51 H 0.10 -0.62 7.96 -2.39 -0.02 -0.64 16 52 H 0.41 -7.62 8.74 -74.06 -0.65 -8.27 16 53 H -0.30 -1.51 6.89 99.48 0.69 -0.82 16 54 H -0.31 -2.25 7.11 99.48 0.71 -1.54 16 Total: 0.00 -31.70 420.38 2.15 -29.56 By element: Atomic # 1 Polarization: -21.61 SS G_CDS: -0.51 Total: -22.11 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: 9.31 Total: 7.04 kcal Atomic # 7 Polarization: -3.85 SS G_CDS: -7.60 Total: -11.45 kcal Atomic # 8 Polarization: -2.21 SS G_CDS: -1.21 Total: -3.42 kcal Atomic # 14 Polarization: -1.77 SS G_CDS: 2.14 Total: 0.38 kcal Total: -31.70 2.15 -29.56 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_12360566.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.253 kcal (2) G-P(sol) polarization free energy of solvation -31.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds